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1.
Opt Express ; 30(15): 26275-26285, 2022 Jul 18.
Artigo em Inglês | MEDLINE | ID: mdl-36236822

RESUMO

Optical needle has become a hot research topic in recent years, due to the excellent properties and potential applications. To achieve a sub-diffraction optical needle, there are three common methods including planar diffractive lenses, reflective mirrors or axicons, and high-NA objective lenses with the designed phase or amplitude elements. Here, we propose a new kind of designed phase and amplitude element called the sinusoidal-amplitude binary phase mask (SA-BPM), which modulates the amplitude and phase distributions of the incident vector optical fields (VOFs) simultaneously. Based on Richards-Wolf vector diffraction integral, the corresponding parameters of SA-BPM and the optimal optical needle length are calculated by exhaustive method and genetic algorithm. We further upgrade the SA-BPM by adding a Gaussian function in the amplitude modulation, and design the Gaussian SA-BPM (GSA-BPM). We find that the ultra-long optical needles are achieved with the SA-BPM and GSA-BPM, and the depth of focus of the optical needles are improved by 30%-70% compared with the case of binary phase mask. Such SA-BPM and GSA-BPM we proposed have great potential for manipulation and utilization of the ultra-long optical needles.

2.
Proteins ; 86(7): 751-758, 2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-29675929

RESUMO

Circular dichroism (CD) spectroscopy is a widely used technique for the evaluation of protein secondary structures that has a significant impact for the understanding of molecular biology. However, the quantitative analysis of protein secondary structures based on CD spectra is still a hard work due to the serious overlap of the spectra corresponding to different structural motifs. Here, Tchebichef image moment (TM) approach is introduced for the first time, which can effectively extract the chemical features in CD spectra for the quantitative analysis of protein secondary structures. The proposed approach was applied to analyze reference set and the obtained results were evaluated by the strict statistical parameters such as correlation coefficient, cross-validation correlation coefficient and root mean squared error. Compared with several specialized prediction methods, TM approach provided satisfactory results, especially for turns and unordered structures. Our study indicates that TM approach can be regarded as a feasible tool for the analysis of the secondary structures of proteins based on CD spectra. An available TMs package is provided and can be used directly for secondary structures prediction.


Assuntos
Dicroísmo Circular , Estrutura Secundária de Proteína , Proteínas/química , Bases de Dados de Proteínas
3.
Proteins ; 85(12): 2231-2238, 2017 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-28921635

RESUMO

Protein phosphorylation is one of the most pervasive post-translational modifications and regulates diverse cellular processes in organisms. Under the catalysis of protein kinases, protein phosphorylation usually occurred in the residues serine (S), threonine (T), or tyrosine (Y). In this contribution, we proposed a novel scheme (named KMPhos) for the theoretical prediction of protein phosphorylation sites. First, the numerical matrix was obtained from a protein sequence fragment by replacing the characters of the residues with the chemical descriptors of amino acid molecules to approximately describe the chemical environment of the protein fragment, which was turned to the grayscale image. Then the Krawtchouk image moments were calculated and used to establish the support vector machine models. The accuracies of 10-fold cross validation for the obtained models on the training set are up to 89.7%, 88.6%, and 90.1% for the residues S, Y, and T, respectively. For the independent test set, the prediction accuracies are up to 90.7% (S), 87.8% (T), and 89.3% (Y). The results of ROC and other evaluations are also satisfactory. Compared with several specialized prediction tools, KMPhos provided the higher accuracy and reliability. An available KMPhos package is provided and can be used directly for phosphorylation sites prediction.


Assuntos
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Processamento de Proteína Pós-Traducional , Serina/metabolismo , Treonina/metabolismo , Tirosina/metabolismo , Sequência de Aminoácidos , Arabidopsis/genética , Proteínas de Arabidopsis/genética , Área Sob a Curva , Biologia Computacional/métodos , Fosforilação , Proteínas Quinases/genética , Proteínas Quinases/metabolismo , Curva ROC , Máquina de Vetores de Suporte
4.
Opt Express ; 24(14): 15978-86, 2016 Jul 11.
Artigo em Inglês | MEDLINE | ID: mdl-27410866

RESUMO

An all-optical scheme for bright γ-rays and dense e-e+ pair source is proposed by irradiating a 1022 W/cm2 laser onto a near-critical-density plasmas filled Al cone. Two-dimensional (2D) QED particle-in-cell (PIC) simulations show that, a dense electron bunch is confined in the laser field due to the radiation reaction and the trapped electrons oscillate transversely, emitting bright γ-rays forward in two ways: (1) nonlinear Compton scattering due to oscillation of electrons in the laser field, and (2) Compton backwardscattering resulting from the bunch colliding with the reflected laser by the cone tip. Finally, the multi-photon Breit-Wheeler process is initiated, producing abundant e-e+ pairs with a density of ∼ 1027m-3. The scheme is further demonstrated by full 3D PIC simulations, which indicates a positron number up to 2 × 109. This compact γ-rays and e-e+ pair source may have many potential applications, such as the laboratory study of astrophysics and nuclear physics.

5.
Int J Syst Evol Microbiol ; 64(Pt 1): 66-71, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-24014623

RESUMO

A Gram-stain-negative, non-motile and aerobic bacterium, designated CF17(T), was isolated from coastal planktonic seaweeds, East China Sea. The isolate grew at 18-37 °C (optimum 25-28 °C), pH 6.5-9.0 (optimum 7.0-8.0) and with 0-5 % NaCl (optimum 1-2 %, w/v) and 0.5-10 % sea salts (optimum 2-3 %, w/v). Growth of strain CF17(T) could be stimulated prominently by supplementing the growth medium with the autoclaved supernatant of a culture of strain CF5, which was isolated from the same sample along with strain CF17(T). The cell morphology of strain CF17(T) was a bean-shaped rod consisting of a swollen end and a long prostheca. The phylogenetic analysis of 16S rRNA gene sequences indicated that strain CF17(T) clustered with Gemmobacter nectariphilus DSM 15620(T) within the genus Gemmobacter. The DNA G+C content of strain CF17(T) was 61.4 mol%. The respiratory quinone was ubiquinone Q-10. The major fatty acids included C18 : 1ω7c and C18 : 0. The polar lipids of strain CF17(T) consisted of phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, two uncharacterized phospholipids, one uncharacterized aminolipid, three uncharacterized glycolipids and one uncharacterized lipid. On the basis of phenotypic, phylogenetic and chemotaxonomic data, strain CF17(T) ( = CGMCC 1.11024(T) = JCM 18498(T)) is considered to represent a novel species of the genus Gemmobacter, for which the name Gemmobacter megaterium sp. nov. is proposed.


Assuntos
Filogenia , Rhodobacteraceae/classificação , Alga Marinha/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , China , DNA Bacteriano/genética , Ácidos Graxos/química , Dados de Sequência Molecular , Fosfolipídeos/química , RNA Ribossômico 16S/genética , Rhodobacteraceae/genética , Rhodobacteraceae/isolamento & purificação , Água do Mar , Análise de Sequência de DNA , Ubiquinona/química
6.
Int J Syst Evol Microbiol ; 64(Pt 6): 2079-2083, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24664580

RESUMO

Two Gram-staining-negative, aerobic, rod-shaped bacterial strains, designated Za6a-12(T) and Za6a-17, were isolated from seawater of the East China Sea. Cells of Za6a-12(T) and Za6a-17 were approximately 1.5-2.0 µm×0.5-0.7 µm and motile by a single polar flagellum. Strains grew optimally at pH 7.5-8.0, 28 °C, and in the presence of 2.5-3.0% (w/v) NaCl. Chemotaxonomic analysis showed that the predominant respiratory quinone of strains Za6a-12(T) and Za6a-17 was ubiquinone-8 (>97%), and the major fatty acids were C(14 : 0), C(16 : 1)ω7c and/or iso-C(15 : 0) 2-OH, C(16 : 0) and C(17 : 1)ω8c. Their DNA G+C contents were 42.7 mol% and 42.8 mol%, respectively. 16S rRNA gene sequence analysis revealed that the isolates belonged to the genus Thalassomonas and showed the highest sequence similarity to Thalassomonas loyana CBMAI 722(T) (95.9%). Strains Za6a-12(T) and Za6a-17 could be differentiated from T. loyana CBMAI 722(T) according to their phenotypic and chemotaxonomic features, DNA G+C contents and fatty acid composition. On the basis of these features, we propose strains Za6a-12(T) and Za6a-17 to be representatives of a novel species of the genus Thalassomonas with the name Thalassomonas eurytherma sp. nov. suggested. Strain Za6a-12(T) ( = CGMCC 1.12115(T) = JCM 18482(T)) is the type strain of this novel species.


Assuntos
Gammaproteobacteria/classificação , Filogenia , Água do Mar/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , China , DNA Bacteriano/genética , Ácidos Graxos/química , Gammaproteobacteria/genética , Gammaproteobacteria/isolamento & purificação , Dados de Sequência Molecular , RNA Ribossômico 16S/análise , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Ubiquinona/química
7.
Carbohydr Polym ; 329: 121782, 2024 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-38286552

RESUMO

Glucans are the most abundant class of macromolecule polymers in fungi, which are commonly found in Ascomycota and Basidiomycota. Fungal glucans are not only essential for cell integrity and function but also crucial for the immense industrial interest in high value applications. They present a variety of structural characteristics at the nanoscale due to the high regulation of genes and the involvement of stochastic processes in synthesis. However, although recent findings have demonstrated the genes of glucans synthesis are relatively conserved across diverse fungi, the formation and organization of diverse glucan structures is still unclear in fungi. Here, we summarize the structural features of fungal glucans and the recent developments in the mechanisms of glucans biosynthesis. Furthermore, we propose the engineering strategies of targeted glucan synthesis and point out the remaining challenges in the synthetic process. Understanding the synthesis process of diverse glucans is necessary for tailoring high value glucan towards specific applications. This engineering strategy contributes to enable the sustainable and efficient production of glucan diversity.


Assuntos
Basidiomycota , beta-Glucanas , Glucanos , beta-Glucanas/química , Parede Celular/química
8.
Mol Cell Endocrinol ; 581: 112113, 2024 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-37989409

RESUMO

Although disorders of primary cilia (PCs) were first reported in human papillary thyroid cancer (PTC) tissues in 1987, their precise role in PTC remains unclear. PCs sense the thyroid follicle colloid environment and act as a cell signaling hub. The present study investigated whether PCs are needed for BRAFV600E-driven PTC. We assessed whether BRAFV600E protein expression correlates with papillary histological architecture and clinicopathological features of PTC. We found that expression of ciliary intraflagellar transport 88 (IFT88) and PC formation were reduced in BRAFV600E-driven PTCs and that loss of cilia may be associated with lymph node metastasis. In PTC cells, the BRAFV600E mutation maintained the aggressiveness of PTC, which was partially related to loss of PCs. Our work confirms that BRAFV600E mutation-driven PC downregulation contributes to maintaining the aggressiveness of PTCs and that manipulating PC can potentially reduce the adverse incidence of PTC in a range of conditions.


Assuntos
Carcinoma Papilar , Neoplasias da Glândula Tireoide , Humanos , Câncer Papilífero da Tireoide/genética , Neoplasias da Glândula Tireoide/patologia , Proteínas Proto-Oncogênicas B-raf/genética , Proteínas Proto-Oncogênicas B-raf/metabolismo , Cílios/metabolismo , Regulação para Baixo/genética , Carcinoma Papilar/genética , Carcinoma Papilar/patologia , Mutação/genética
9.
Int J Biol Macromol ; 269(Pt 1): 131799, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38677677

RESUMO

Polysaccharides are the important bioactive macromolecules in Agrocybe cylindracea, but their changes are as yet elusive during developmental process. This study investigated the dynamic changes of polysaccharides from A. cylindracea fruiting body water extract at four developmental stages and its structure characteristics. Results revealed that the polysaccharides from A. cylindracea water extract significantly increased at the pileus expansion stage and the increased fraction could be α-glucan. The further purification and identification indicated that this α-glucan was a glycogen. It had typical morphology of ß particles with a molecular weight of 1375 kDa. Its backbone comprised α-D-(1 â†’ 4)-Glcp and α-D-(1 â†’ 4,6)-Glcp residues at a ratio of 5:1, terminated by α-D-Glcp residue. Rheological behavior suggested that it was a Newtonian fluid at the concentration of 1 %. In addition, despite both the glycogen and natural starch were composed of D-glucose, they exhibited the entirely distinct Maltese cross characteristic and unique crystalline structure. This study is the first to demonstrate the presence of abundant glycogen in the pileus expansion stage of A. cylindracea, which provides new insights on the change patterns of fungal polysaccharides.


Assuntos
Agrocybe , Glucanos , Água , Glucanos/química , Água/química , Agrocybe/química , Peso Molecular , Glicogênio/metabolismo , Glicogênio/química , Carpóforos/química , Reologia
10.
J Agric Food Chem ; 72(22): 12810-12821, 2024 Jun 05.
Artigo em Inglês | MEDLINE | ID: mdl-38778434

RESUMO

Polysaccharides derived from Agrocybe cylindracea have been demonstrated to exhibit various bioactivities. However, studies on their structural characteristics during the growth process are limited. This study aimed to compare the physicochemical properties and structural characteristics of alkali-extracted polysaccharides from A. cylindracea fruiting bodies (JACP) across four growth stages. Results showed that the extraction yields and protein levels of JACP declined along with the growth of A. cylindracea, while the contents of neutral sugar and glucose increased significantly. However, JACP exhibited structural characteristics similar to those across the four stages. Four polysaccharide subfractions were isolated from each growth stage, including JACP-Et30, JACP-Et50, JACP-Et60, and JACP-Et70. JACP-Et30 from the four stages and JACP-Et50 from the initial three stages were identified as heteroglucans with ß-1,3-d-Glcp and ß-1,6-d-Glcp residues as main chains, respectively. However, other subfractions were considered as ß-1,6-d-glucans containing minor glucuronic acid. These subfractions were predominantly replaced by Glcp residues at the O-3 and O-6 positions. Overall, while JACP exhibited variable physicochemical properties, its structural characteristics remained stable during the growth process, offering new insights into its potential applications in the food and medicinal industries.


Assuntos
Agrocybe , Carpóforos , Polissacarídeos , Agrocybe/química , Agrocybe/crescimento & desenvolvimento , Carpóforos/química , Carpóforos/crescimento & desenvolvimento , Polissacarídeos/química , Polissacarídeos/isolamento & purificação , Álcalis/química
11.
Carbohydr Polym ; 339: 122235, 2024 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-38823906

RESUMO

This study explored the physicochemical properties and structural characteristics of Agrocybe cylindracea polysaccharides at four developmental stages, as well as their dynamic evolution during maturation. Results showed that the polysaccharides from A. cylindracea water extract exhibited similar structural characteristics across all four maturity stages, despite a significant reduction in yields. Four water-soluble heteroglycans, including one high molecular weight (ACPM-Et50-I) and three low molecular weight (ACPM-Et50-II, ACPM-Et60, ACPM-Et80), were isolated from A. cylindracea at each maturity stage. ACPM-Et50-I was identified as branched heterogalactans, while ACPM-Et60 and ACPM-Et80 were branched heteroglucans. However, ACPM-Et50-II was characterized as a branched glucuronofucogalactoglucan at the tide-turning stage but a glucuronofucoglucogalactan at the pileus expansion stage due to the increase of its α-(1 â†’ 6)-D-Galp. In general, although the structural skeletons of most A. cylindracea heteroglycans were similar during maturation as shown by their highly consistent glycosyl linkages, there were still differences in the distribution of some heteroglucans. This work has for the first time reported a glucuronofucogalactoglucan in A. cylindracea and its dynamic evolution during maturation, which may facilitate the potential application of A. cylindracea in food and biomedicine industries.


Assuntos
Agrocybe , Água , Água/química , Agrocybe/química , Glucanos/química , Polissacarídeos/química , Peso Molecular
12.
Int J Syst Evol Microbiol ; 63(Pt 9): 3192-3196, 2013 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-23435250

RESUMO

An aerobic, Gram-stain-negative, short rod-shaped, non-motile and non-sporulating bacterium, designed strain 8-1b(T), was isolated from seaweed collected from the intertidal zone of Zhoushan sea area, East China Sea. Strain 8-1b(T) grew at 4-39 °C (optimum, 28-32 °C) and at pH 6.0-9.5 (optimum, 7.0-8.5), and with 0.5-8% (w/v) NaCl (optimum, 1-3%) and 0.5-10% (w/v) sea salts (optimum, 2-3%). Analysis of 16S rRNA gene sequences revealed that strain 8-1b(T) was related closely to Aequorivita capsosiphonis JCM 15070(T) (96.7% similarity). The DNA G+C content of strain 8-1b(T) was 36.6 mol%. Compared with reference strains, cells of strain 8-1b(T) showed positive activities for H2S production and utilization of D-mannose, DL-lactic acid, L-asparagine and glycyl L-aspartic acid. The major fatty acids of strain 8-1b(T) were iso-C(15:0), iso-C(17:0) 3-OH, iso-C(15:1) G and iso-C(17:1)ω9c. The main respiratory quinone was menaquinone 6. The polar lipids of strain 8-1b(T) consisted of phosphatidylethanolamine (PE), three uncharacterized aminolipids (AL1-3), four uncharacterized glycolipids (GL1-4) and five uncharacterized lipids (L1-5). Based on the phenotypic and genotypic characterization, strain 8-1b(T) represents a novel species of the genus Aequorivita, for which the name Aequorivita viscosa sp. nov. is proposed. The type strain is strain 8-1b(T) ( =CGMCC 1.11023(T) = JCM 18497(T)). Emended descriptions of Aequorivita antarctica and Aequorivita capsosiphonis are also presented.


Assuntos
Flavobacteriaceae/classificação , Filogenia , Alga Marinha/microbiologia , Técnicas de Tipagem Bacteriana , Composição de Bases , China , DNA Bacteriano/genética , Ácidos Graxos/análise , Flavobacteriaceae/genética , Flavobacteriaceae/isolamento & purificação , Glicolipídeos/análise , Dados de Sequência Molecular , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Vitamina K 2/análogos & derivados , Vitamina K 2/análise
13.
Huan Jing Ke Xue ; 41(3): 1418-1424, 2020 Mar 08.
Artigo em Zh | MEDLINE | ID: mdl-32608644

RESUMO

The aim of the present study was to investigate the effect of alkaline sludge fermentation products as a carbon source on the nitrification process and performance. During the operation of a biological nitrogen removal (BNR) system with sludge fermentation mixture as the carbon source, the activities of ammonia-oxidizing bacteria (AOB) and nitrite-oxidizing bacteria (NOB) were inhibited at the beginning. After 16 days, the activity of AOB began to recover rapidly, but the activity of NOB was still inhibited. The specific nitrate production rate (SNaPR, N/VSS) decreased from 0.1791 g·(g·d)-1 to 0.0078 g·(g·d)-1. At the same time, the nitrite accumulation rate increased from 8.12% to 91.42% and remained stable. The sludge fermentation mixture was separated into sludge fermentation liquid and sludge fermentation sediment. The changes in nitrification activity by adding different types of fermentation products were investigated. The results showed that the activity of NOB decreased in the experimental group fed with the sludge fermentation mixture and the fermentation liquid. The SNaPR decreased from an initial 0.1793 g·(g·d)-1 to 0.1510 g·(g·d)-1 and 0.1617 g·(g·d)-1, respectively. In the experimental group fed with fermentation sediment, the activity of NOB increased. SNaPR rose from 0.1793 g·(g·d)-1 to 0.1864 g·(g·d)-1. Therefore, the activity of the NOB can be inhibited when the sludge fermentation mixture and the fermentation liquid are used as a carbon source in the nitrification process. In addition, the short-range nitrification process can be realized, which is beneficial to accelerating the reaction speed and saving investment in this type of carbon source.

14.
Gland Surg ; 9(5): 1486-1494, 2020 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-33224823

RESUMO

BACKGROUND: Tumor size affects clinical staging and is closely related to prognosis. Therefore, early diagnosis of breast cancer is one of the most important methods to reduce mortality and improve prognosis. However, minimal breast cancer is difficult to differentiate from small benign breast masses due to insufficient typical malignant signs. The significantly increased range of enhancement can be an important indication for the prediction of malignancy; however, quantitative studies on the extent of enhancement are rarely reported. The purpose of this study was to investigate the value of contrast-enhanced ultrasound (CEUS) area ratio in finding benign and malignant small breast masses. METHODS: A retrospective analysis was conducted on 88 patients with breast masses confirmed by surgery or needle biopsy (the maximal diameter not over 1 cm). 88 breast masses were divided into the younger age group (not over 40 years old) and older age group (over 40 years old) according to the patient's age. The receiver operating characteristic (ROC) curve was used to determine the cutoff values of CEUS area ratio in diagnosing benign or malignant small breast masses in each group. The efficiency of different cutoff values in finding benign and malignant small breast masses of the distinct groups was analyzed. RESULTS: The CEUS area ratio of malignant mass was larger than benign masses (P<0.05). The CEUS area ratio of malignant masses in the younger age group was larger than that in the older age group (P<0.05). The results of the ROC curve analysis showed that the area under the curve (AUC) and the cutoff values of the entire group, the younger age group, and the older age group were 0.887, 1.65; 0.909, 1.95; and 0.908, 1.22, respectively. When the cutoff value of the older age group was reduced from 1.65 to 1.22, its diagnostic sensitivity was improved significantly (P<0.05). CONCLUSIONS: CEUS area ratio has specific application value in finding benign and malignant small breast masses. Proper reduction of the cutoff value of elderly patients can further improve its diagnostic sensitivity without significantly reducing the specificity.

15.
Chin Med J (Engl) ; 132(11): 1314-1321, 2019 Jun 05.
Artigo em Inglês | MEDLINE | ID: mdl-30888986

RESUMO

BACKGROUND: Fusion genes may play an important role in tumorigenesis, prognosis, and drug resistance; however, studies on fusion genes in endometrial cancer (EC) are rare. This study aimed to identify new fusion genes and to explore their clinical significance in EC. METHODS: A total of 28 patients diagnosed with EC were enrolled in this study. RNA sequencing was used to obtain entire genomes and transcriptomes. STAR-comparison and STAR-fusion prediction were applied to predict the fusion genes. Chi-square tests and Student t tests were used to verify the clinical significance with SPSS 13.0 software. RESULTS: New fusion genes were found, and the number of fusion genes varied from 3 to 110 among all patients with EC. The type of fusion genes varied and included messenger RNA (mRNA)-mRNA, long non-coding RNA (lncRNA)-lncRNA, and lncRNA-mRNA. There were six fusion genes with high fusion rates, namely, RP11-123O10.4-GRIP1, RP11-444D3.1-SOX5, RP11-680G10.1-GSE1, NRIP1-AF127936.7, RP11-96H19.1-RP11-446N19.1, and DPH7-PTP4A3. Further studies showed that these fusion genes are related to stage, grade, and recurrence, in which NRIP1-AF127936.7 and DPH7-PTP4A3 were found only in stage III patients with EC. DPH7-PTP4A3 was found in grades 2 and 3, and recurrent patients with EC. CONCLUSION: Fusion genes play an essential role in EC. Six genes that are overexpressed with high fusion rates are identified. NRIP1-AF127936.7 and DPH7-PTP4A3 might be related to stage, and DPH7-PTP4A3 be related to grade and recurrence.


Assuntos
Neoplasias do Endométrio/genética , RNA Longo não Codificante/genética , RNA Mensageiro/genética , Distribuição de Qui-Quadrado , Neoplasias do Endométrio/patologia , Feminino , Regulação Neoplásica da Expressão Gênica/genética , Humanos , Proteínas de Neoplasias/genética , Proteína 1 de Interação com Receptor Nuclear/genética , Gravidez , Proteínas Tirosina Fosfatases/genética , Análise de Sequência de RNA , Software
16.
Int J Biol Sci ; 15(6): 1287-1298, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31223287

RESUMO

p53 is the major mediator of the tumor suppressor response. It participates in apoptosis and senescence and can respond to DNA damage. As a crucial sequence-specific transcription factor, p53 regulates the expression of many genes, such as small noncoding RNAs (ncRNAs), microRNAs, and long ncRNAs (lncRNAs). Given the emergence of novel and high-throughput sequencing technologies, many lncRNAs have been discovered. LncRNAs may function as vital gene regulators in a variety of biological processes through extensive mechanisms. Recently, lncRNAs have been demonstrated to be associated with the p53 regulatory pathway. In this review, we discuss the current and fast growing knowledge about the influence of lncRNAs to the p53 signaling pathway, the different mechanisms by which they affect gene expression in cancer. Our findings show that p53-associated lncRNAs may be used as biomarkers for cancer diagnosis or targets for disease therapy.


Assuntos
Neoplasias/patologia , RNA Longo não Codificante/fisiologia , Proteína Supressora de Tumor p53/genética , Proliferação de Células , Progressão da Doença , Humanos , Neoplasias/metabolismo , Processamento de Proteína Pós-Traducional , Estabilidade Proteica , RNA Longo não Codificante/genética , Transdução de Sinais
17.
Int J Biol Sci ; 14(14): 2003-2011, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30585264

RESUMO

Long noncoding RNAs (lncRNAs), with length of more than 200 nucleotides, are not translated into proteins but involved in multiple diverse diseases, especially tumorigenesis. The dysregulation of lncRNAs greatly contributes to the progression of various tumors through specific signaling pathways, including Wnt/ß-catenin signaling pathway, which is associated with malignant features of tumors. The interactions between lncRNAs, which have specific expression characteristics in diverse cancer tissues, and Wnt/ß-catenin signaling pathway, exhibit potential as novel biomarkers and therapeutic targets. In this review, we aim to present research findings on the roles of Wnt pathway-related lncRNAs and their effects on Wnt/ß-catenin signaling to regulate tumorigenesis in different cancer types. Results may be used as basis to develop or improve strategies for treatment of different carcinomas.


Assuntos
RNA Longo não Codificante/genética , Via de Sinalização Wnt/fisiologia , Animais , Movimento Celular/genética , Movimento Celular/fisiologia , Proliferação de Células/genética , Proliferação de Células/fisiologia , Regulação Neoplásica da Expressão Gênica/genética , Regulação Neoplásica da Expressão Gênica/fisiologia , Humanos , Via de Sinalização Wnt/genética
18.
Mol Med Rep ; 18(1): 931-937, 2018 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-29767260

RESUMO

Asparaginase like 1 (ASRGL1) protein belongs to the N­terminal nucleophile group, cleaving the isoaspartyl­dipeptides and L­asparagine by adding water. It tends to be overexpressed in cancerous tumors including ovarian cancer and breast tumors. The present study assessed the potential ability of ASRGL1 as a molecular target in gene­based cervical cancer treatment. The protein expression level of ASRGL1 was determined in paraffin­embedded tumor specimen by immunohistochemistry. Additionally, in order to assess the activity of ASRGL1 during the process of cervical cancer cell multiplication, ASRGL1­short hairpin (sh) RNA­expressing lentivirus was established, which was used to infect SiHa cells. The Cellomics ArrayScan VT1 Reader identified the influence of downregulation on SiHa caused by RNA interference­intervened ASRGL1. Flow cytometric analysis was also performed to evaluate the influence. The cyclin dependent kinase (CDK2), cyclin A2, B­cell lymphoma 2 (Bcl­2) and Bcl­2­associated X protein (Bax) expression levels were assessed by western blot analysis. ASRGL1 was observed to be overexpressed in cervical cancer tissues when compared with the adjacent normal tissues. The knockdown of ASRGL1 in SiHa by ASRGL1­shRNA lentivirus infection significantly inhibited cell growth and enhanced cellular apoptosis; the cells were also captured during the S phase. The knockdown of ASRGL1 expression led to the increased expression of Bax and decreased expression of Bcl­2, CDK2 and cyclin A2. In conclusion, ASRGL1 was closely associated with growth and apoptosis in cervical cancer. Therefore, ASRGL1 may be a novel, potentially effective anti­cervical cancer therapy.


Assuntos
Apoptose , Asparaginase/biossíntese , Autoantígenos/biossíntese , Regulação para Baixo , Regulação Enzimológica da Expressão Gênica , Regulação Neoplásica da Expressão Gênica , Proteínas de Neoplasias/metabolismo , Interferência de RNA , Asparaginase/genética , Autoantígenos/genética , Linhagem Celular Tumoral , Feminino , Humanos , Proteínas de Neoplasias/genética , Neoplasias do Colo do Útero
19.
Methods Appl Fluoresc ; 6(1): 015008, 2017 12 21.
Artigo em Inglês | MEDLINE | ID: mdl-28933348

RESUMO

Fluorescence spectroscopy with an excitation-emission matrix (EEM) is a fast and inexpensive technique and has been applied to the detection of a very wide range of analytes. However, serious scattering and overlapping signals hinder the applications of EEM spectra. In this contribution, the multi-resolution capability of Tchebichef moments was investigated in depth and applied to the analysis of two EEM data sets (data set 1 consisted of valine-tyrosine-valine, tryptophan-glycine and phenylalanine, and data set 2 included vitamin B1, vitamin B2 and vitamin B6) for the first time. By means of the Tchebichef moments with different orders, the different information in the EEM spectra can be represented. It is owing to this multi-resolution capability that the overlapping problem was solved, and the information of chemicals and scatterings were separated. The obtained results demonstrated that the Tchebichef moment method is very effective, which provides a promising tool for the analysis of EEM spectra. It is expected that the applications of Tchebichef moment method could be developed and extended in complex systems such as biological fluids, food, environment and others to deal with the practical problems (overlapped peaks, unknown interferences, baseline drifts, and so on) with other spectra.

20.
Artigo em Inglês | MEDLINE | ID: mdl-27889515

RESUMO

Traditional Chinese medicines have gotten growing attention and the product quality also became uneven. In this paper, Tchebichef image moments coupled with high performance liquid chromatography with photodiode array detector were proposed to the similarity analysis of the fourteen batches of Pudilan Xiaoyan tablets (Chinese medicine complex), which were based on the grayscale images of three dimensional (3D) fingerprint spectra. Hierarchical cluster analysis was used for displaying the classification results. As a comparison, traditional principal component analysis (PCA) method based on the chromatograms under single-fixed wavelength was carried out on the same samples. The analytical results indicated that the proposed approach could provide more accurate and reasonable results owing to its powerful invariant and multi-resolution capability of image moments.


Assuntos
Cromatografia Líquida de Alta Pressão/métodos , Medicamentos de Ervas Chinesas/química , Algoritmos , Análise por Conglomerados , Análise de Componente Principal , Controle de Qualidade , Comprimidos
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