Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.

Lovell, John T; MacQueen, Alice H; Mamidi, Sujan; Bonnette, Jason; Jenkins, Jerry; Napier, Joseph D; Sreedasyam, Avinash; Healey, Adam; Session, Adam; Shu, Shengqiang; Barry, Kerrie; Bonos, Stacy; Boston, LoriBeth; Daum, Christopher; Deshpande, Shweta; Ewing, Aren; Grabowski, Paul P; Haque, Taslima; Harrison, Melanie; Jiang, Jiming; Kudrna, Dave; Lipzen, Anna; Pendergast, Thomas H; Plott, Chris; Qi, Peng; Saski, Christopher A; Shakirov, Eugene V; Sims, David; Sharma, Manoj; Sharma, Rita; Stewart, Ada; Singan, Vasanth R; Tang, Yuhong; Thibivillier, Sandra; Webber, Jenell; Weng, Xiaoyu; Williams, Melissa; Wu, Guohong Albert; Yoshinaga, Yuko; Zane, Matthew; Zhang, Li; Zhang, Jiyi; Behrman, Kathrine D; Boe, Arvid R; Fay, Philip A; Fritschi, Felix B; Jastrow, Julie D; Lloyd-Reilley, John; Martínez-Reyna, Juan Manuel; Matamala, Roser.

Nature ; 590(7846): 438-444, 2021 02.

Artigo em Inglês | MEDLINE | ID: mdl-33505029

2.

Host genotype controls ecological change in the leaf fungal microbiome.

VanWallendael, Acer; Benucci, Gian Maria Niccolo; da Costa, Pedro Beschoren; Fraser, Linnea; Sreedasyam, Avinash; Fritschi, Felix; Juenger, Thomas E; Lovell, John T; Bonito, Gregory; Lowry, David B.

PLoS Biol ; 20(8): e3001681, 2022 08.

Artigo em Inglês | MEDLINE | ID: mdl-35951523

3.

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.

Sreedasyam, Avinash; Plott, Christopher; Hossain, Md Shakhawat; Lovell, John T; Grimwood, Jane; Jenkins, Jerry W; Daum, Christopher; Barry, Kerrie; Carlson, Joseph; Shu, Shengqiang; Phillips, Jeremy; Amirebrahimi, Mojgan; Zane, Matthew; Wang, Mei; Goodstein, David; Haas, Fabian B; Hiss, Manuel; Perroud, Pierre-François; Jawdy, Sara S; Yang, Yongil; Hu, Rongbin; Johnson, Jenifer; Kropat, Janette; Gallaher, Sean D; Lipzen, Anna; Shakirov, Eugene V; Weng, Xiaoyu; Torres-Jerez, Ivone; Weers, Brock; Conde, Daniel; Pappas, Marilia R; Liu, Lifeng; Muchlinski, Andrew; Jiang, Hui; Shyu, Christine; Huang, Pu; Sebastian, Jose; Laiben, Carol; Medlin, Alyssa; Carey, Sankalpi; Carrell, Alyssa A; Chen, Jin-Gui; Perales, Mariano; Swaminathan, Kankshita; Allona, Isabel; Grattapaglia, Dario; Cooper, Elizabeth A; Tholl, Dorothea; Vogel, John P; Weston, David J.

Nucleic Acids Res ; 51(16): 8383-8401, 2023 09 08.

Artigo em Inglês | MEDLINE | ID: mdl-37526283

4.

A generalist-specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range.

Napier, Joseph D; Grabowski, Paul P; Lovell, John T; Bonnette, Jason; Mamidi, Sujan; Gomez-Hughes, Maria Jose; VanWallendael, Acer; Weng, Xiaoyu; Handley, Lori H; Kim, Min K; Boe, Arvid R; Fay, Philip A; Fritschi, Felix B; Jastrow, Julie D; Lloyd-Reilley, John; Lowry, David B; Matamala, Roser; Mitchell, Robert B; Rouquette, Francis M; Wu, Yanqi; Webber, Jenell; Jones, Teresa; Barry, Kerrie; Grimwood, Jane; Schmutz, Jeremy; Juenger, Thomas E.

Proc Natl Acad Sci U S A ; 119(15): e2118879119, 2022 04 12.

Artigo em Inglês | MEDLINE | ID: mdl-35377798

5.

Natural variation in plant telomere length is associated with flowering time.

Choi, Jae Young; Abdulkina, Liliia R; Yin, Jun; Chastukhina, Inna B; Lovell, John T; Agabekian, Inna A; Young, Pierce G; Razzaque, Samsad; Shippen, Dorothy E; Juenger, Thomas E; Shakirov, Eugene V; Purugganan, Michael D.

Plant Cell ; 33(4): 1118-1134, 2021 05 31.

Artigo em Inglês | MEDLINE | ID: mdl-33580702

6.

A Pleiotropic Flowering Time QTL Exhibits Gene-by-Environment Interaction for Fitness in a Perennial Grass.

Weng, Xiaoyu; Haque, Taslima; Zhang, Li; Razzaque, Samsad; Lovell, John T; Palacio-Mejía, Juan Diego; Duberney, Perla; Lloyd-Reilley, John; Bonnette, Jason; Juenger, Thomas E.

Mol Biol Evol ; 39(10)2022 10 07.

Artigo em Inglês | MEDLINE | ID: mdl-36149808

7.

The first complete human genome.

Lovell, John T; Grimwood, Jane.

Nature ; 606(7914): 468-469, 2022 06.

Artigo em Inglês | MEDLINE | ID: mdl-35606432

8.

Cytochrome P450-catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.).

Muchlinski, Andrew; Jia, Meirong; Tiedge, Kira; Fell, Jason S; Pelot, Kyle A; Chew, Lisl; Davisson, Danielle; Chen, Yuxuan; Siegel, Justin; Lovell, John T; Zerbe, Philipp.

Plant J ; 108(4): 1053-1068, 2021 11.

Artigo em Inglês | MEDLINE | ID: mdl-34514645

9.

QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient.

Lowry, David B; Lovell, John T; Zhang, Li; Bonnette, Jason; Fay, Philip A; Mitchell, Robert B; Lloyd-Reilley, John; Boe, Arvid R; Wu, Yanqi; Rouquette, Francis M; Wynia, Richard L; Weng, Xiaoyu; Behrman, Kathrine D; Healey, Adam; Barry, Kerrie; Lipzen, Anna; Bauer, Diane; Sharma, Aditi; Jenkins, Jerry; Schmutz, Jeremy; Fritschi, Felix B; Juenger, Thomas E.

Proc Natl Acad Sci U S A ; 116(26): 12933-12941, 2019 06 25.

Artigo em Inglês | MEDLINE | ID: mdl-31182579

10.

Environmentally responsive QTL controlling surface wax load in switchgrass.

Bragg, Jennifer; Tomasi, Pernell; Zhang, Li; Williams, Tina; Wood, Delilah; Lovell, John T; Healey, Adam; Schmutz, Jeremy; Bonnette, Jason E; Cheng, Prisca; Chanbusarakum, Lisa; Juenger, Thomas; Tobias, Christian M.

Theor Appl Genet ; 133(11): 3119-3137, 2020 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-32803378

11.

Mutation Accumulation in an Asexual Relative of Arabidopsis.

Lovell, John T; Williamson, Robert J; Wright, Stephen I; McKay, John K; Sharbel, Timothy F.

PLoS Genet ; 13(1): e1006550, 2017 01.

Artigo em Inglês | MEDLINE | ID: mdl-28068346

12.

Genetic Mapping Reveals an Anthocyanin Biosynthesis Pathway Gene Potentially Influencing Evolutionary Divergence between Two Subspecies of Scarlet Gilia (Ipomopsis aggregata).

Campitelli, Brandon E; Kenney, Amanda M; Hopkins, Robin; Soule, Jacob; Lovell, John T; Juenger, Thomas E.

Mol Biol Evol ; 35(4): 807-822, 2018 04 01.

Artigo em Inglês | MEDLINE | ID: mdl-29253197

13.

Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass.

Lovell, John T; Schwartz, Scott; Lowry, David B; Shakirov, Eugene V; Bonnette, Jason E; Weng, Xiaoyu; Wang, Mei; Johnson, Jenifer; Sreedasyam, Avinash; Plott, Christopher; Jenkins, Jerry; Schmutz, Jeremy; Juenger, Thomas E.

Genome Res ; 26(4): 510-8, 2016 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-26953271

14.

Complex interactions between day length and diurnal patterns of gene expression drive photoperiodic responses in a perennial C₄ grass.

Weng, Xiaoyu; Lovell, John T; Schwartz, Scott L; Cheng, Changde; Haque, Taslima; Zhang, Li; Razzaque, Samsad; Juenger, Thomas E.

Plant Cell Environ ; 42(7): 2165-2182, 2019 07.

Artigo em Inglês | MEDLINE | ID: mdl-30847928

15.

Exploiting Differential Gene Expression and Epistasis to Discover Candidate Genes for Drought-Associated QTLs in Arabidopsis thaliana.

Lovell, John T; Mullen, Jack L; Lowry, David B; Awole, Kedija; Richards, James H; Sen, Saunak; Verslues, Paul E; Juenger, Thomas E; McKay, John K.

Plant Cell ; 27(4): 969-83, 2015 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-25873386

16.

Hybrid apomicts trapped in the ecological niches of their sexual ancestors.

Mau, Martin; Lovell, John T; Corral, José M; Kiefer, Christiane; Koch, Marcus A; Aliyu, Olawale M; Sharbel, Timothy F.

Proc Natl Acad Sci U S A ; 112(18): E2357-65, 2015 May 05.

Artigo em Inglês | MEDLINE | ID: mdl-25902513

17.

Promises and Challenges of Eco-Physiological Genomics in the Field: Tests of Drought Responses in Switchgrass.

Lovell, John T; Shakirov, Eugene V; Schwartz, Scott; Lowry, David B; Aspinwall, Michael J; Taylor, Samuel H; Bonnette, Jason; Palacio-Mejia, Juan Diego; Hawkes, Christine V; Fay, Philip A; Juenger, Thomas E.

Plant Physiol ; 172(2): 734-748, 2016 10.

Artigo em Inglês | MEDLINE | ID: mdl-27246097

18.

Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana.

Ågrena, Jon; Oakley, Christopher G; McKay, John K; Lovell, John T; Schemske, Douglas W.

Proc Natl Acad Sci U S A ; 110(52): 21077-82, 2013 Dec 24.

Artigo em Inglês | MEDLINE | ID: mdl-24324156

19.

Mating system and environmental variation drive patterns of adaptation in Boechera spatifolia (Brassicaceae).

Lovell, John T; Grogan, Kelsi; Sharbel, Timothy F; McKay, John K.

Mol Ecol ; 23(18): 4486-97, 2014 09.

Artigo em Inglês | MEDLINE | ID: mdl-25112786

20.

Genome resources for three modern cotton lines guide future breeding efforts.

Sreedasyam, Avinash; Lovell, John T; Mamidi, Sujan; Khanal, Sameer; Jenkins, Jerry W; Plott, Christopher; Bryan, Kempton B; Li, Zhigang; Shu, Shengqiang; Carlson, Joseph; Goodstein, David; De Santiago, Luis; Kirkbride, Ryan C; Calleja, Sebastian; Campbell, Todd; Koebernick, Jenny C; Dever, Jane K; Scheffler, Jodi A; Pauli, Duke; Jenkins, Johnie N; McCarty, Jack C; Williams, Melissa; Boston, LoriBeth; Webber, Jenell; Udall, Joshua A; Chen, Z Jeffrey; Bourland, Fred; Stiller, Warwick N; Saski, Christopher A; Grimwood, Jane; Chee, Peng W; Jones, Don C; Schmutz, Jeremy.

Nat Plants ; 2024 May 30.

Artigo em Inglês | MEDLINE | ID: mdl-38816498

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