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1.
J Biol Chem ; 289(46): 31805-31817, 2014 Nov 14.
Artigo em Inglês | MEDLINE | ID: mdl-25278022

RESUMO

SHH (Sonic Hedgehog)-GLI signaling plays an important role during embryogenesis and in tumorigenesis. The survival and growth of several types of cancer depend on autonomously activated SHH-GLI signaling. A protein complex containing the ubiquitin ligase MID1 and protein phosphatase 2A regulates the nuclear localization and transcriptional activity of GLI3, a transcriptional effector molecule of SHH, in cancer cell lines with autonomously activated SHH signaling. However, the exact molecular mechanisms that mediate the interaction between MID1 and GLI3 remained unknown. Here, we show that MID1 catalyzes the ubiquitination and proteasomal cleavage of the GLI3 regulator Fu. Our data suggest that Fu ubiquitination and cleavage is one of the key elements connecting the MID1-PP2A protein complex with GLI3 activity control.


Assuntos
Fatores de Transcrição Kruppel-Like/metabolismo , Proteínas dos Microtúbulos/metabolismo , Proteínas do Tecido Nervoso/metabolismo , Proteínas Nucleares/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Fatores de Transcrição/metabolismo , Ubiquitina-Proteína Ligases/química , Catálise , Linhagem Celular Tumoral , Núcleo Celular/metabolismo , Primers do DNA , Regulação Neoplásica da Expressão Gênica , Células HeLa , Proteínas Hedgehog/metabolismo , Humanos , Lisina/química , Complexo de Endopeptidases do Proteassoma/metabolismo , Transdução de Sinais , Ubiquitina/química , Ubiquitinação , Proteína Gli3 com Dedos de Zinco
2.
J Biol Chem ; 285(52): 41019-33, 2010 Dec 24.
Artigo em Inglês | MEDLINE | ID: mdl-20943665

RESUMO

Crystal structures of the unique hexokinase KlHxk1 of the yeast Kluyveromyces lactis were determined using eight independent crystal forms. In five crystal forms, a symmetrical ring-shaped homodimer was observed, corresponding to the physiological dimer existing in solution as shown by small-angle x-ray scattering. The dimer has a head-to-tail arrangement such that the small domain of one subunit interacts with the large domain of the other subunit. Dimer formation requires favorable interactions of the 15 N-terminal amino acids that are part of the large domain with amino acids of the small domain of the opposite subunit, respectively. The head-to-tail arrangement involving both domains of the two KlHxk1 subunits is appropriate to explain the reduced activity of the homodimer as compared with the monomeric enzyme and the influence of substrates and products on dimer formation and dissociation. In particular, the structure of the symmetrical KlHxk1 dimer serves to explain why phosphorylation of conserved residue Ser-15 may cause electrostatic repulsions with nearby negatively charged residues of the adjacent subunit, thereby inducing a dissociation of the homologous dimeric hexokinases KlHxk1 and ScHxk2. Two complex structures of KlHxk1 with bound glucose provide a molecular model of substrate binding to the open conformation and the subsequent classical domain closure motion of yeast hexokinases. The entirety of the novel data extends the current concept of glucose signaling in yeast and complements the induced-fit model by integrating the events of N-terminal phosphorylation and dissociation of homodimeric yeast hexokinases.


Assuntos
Proteínas Fúngicas/química , Hexoquinase/química , Kluyveromyces/enzimologia , Modelos Moleculares , Multimerização Proteica/fisiologia , Cristalografia por Raios X , Proteínas Fúngicas/metabolismo , Glucose/química , Glucose/metabolismo , Hexoquinase/metabolismo , Fosforilação/fisiologia , Estrutura Quaternária de Proteína , Estrutura Terciária de Proteína
3.
FASEB J ; 24(10): 4000-19, 2010 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-20570965

RESUMO

Many proteins mature within the secretory pathway by the acquisition of glycans. Failure to maintain the proper distribution of the glycosylation machinery might lead to disease. High expression levels of the ubiquitous Golgi protein estrogen receptor-binding fragment-associated gene 9 (EBAG9) in human tumors correlate with poor clinical prognosis, and EBAG9 overexpression in epithelial cell lines induces truncated glycans, typical of many carcinomas. Here, we addressed the pathogenetic link between EBAG9 expression and the alteration of the cellular glycome. We applied confocal microscopy, live imaging, pulse-chase labeling in conjunction with immunoprecipitation, and enzymatic activity assays in a variety of EBAG9-overexpressing or depleted epithelial tumor cell lines. EBAG9 shuttles between the ER-Golgi intermediate compartment and the cis-Golgi, and we demonstrate association of EBAG9 with coat protein complex I (COPI)-coated transport vesicles. EBAG9 overexpression imposes delay of endoplasmic reticulum-to-Golgi transport and mislocalizes components of the ER quality control and glycosylation machinery. Conversely, EBAG9 down-regulation accelerates glycoprotein transport through the Golgi and enhances mannosidase activity. Thus, EBAG9 acts as a negative regulator of a COPI-dependent ER-to-Golgi transport pathway in epithelial cells and represents a novel pathogenetic principle in which interference with intracellular membrane trafficking results in the emergence of a tumor-associated glycome.


Assuntos
Antígenos de Neoplasias/fisiologia , Complexo I de Proteína do Envoltório/fisiologia , Glicoproteínas/metabolismo , Western Blotting , Linhagem Celular Tumoral , Imunofluorescência , Humanos
4.
J Neurochem ; 106(1): 372-83, 2008 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-18419770

RESUMO

OPA1, a nuclear encoded mitochondrial protein causing autosomal dominant optic atrophy, is a key player in mitochondrial fusion and cristae morphology regulation. In the present study, we have compared the OPA1 transcription and translation products of different mouse tissues. Unlike in humans, we found only two exons (4b and 5b) to be involved in alternative splicing. The relative abundance of the resulting four different splice variants is tissue-dependent. Proteolytic cleavage by mitochondrial processing peptidase generates two long forms, isoforms 1 and 7, which lead to three short forms representing the end products after further proteolytic processing. In contrast, isoforms 5 and 8 are directly processed into their corresponding short forms. Short form 1 molecules form 184 kDa dimers, whereas all other isoforms contribute to 285 kDa complexes. Coiled-coil domains of the OPA1 protein specifically homo-associate and may be involved in the formation of these complexes. Furthermore, the region encoded by exon 5b inhibits the self-association of coiled-coil domain-I. Finally, our data pinpoint isoform 1 as the, by far, most abundant isoform in the nervous tissue. We postulate that manipulation of isoform 1 protein levels in relation to the other isoforms induces changes in the mitochondrial network in the cell and therefore, mutations affecting the level of functional isoform 1 could lead to devastating effects on retinal ganglion cells.


Assuntos
Processamento Alternativo/genética , GTP Fosfo-Hidrolases/genética , Mitocôndrias/genética , Proteínas Mitocondriais/genética , Atrofia Óptica Autossômica Dominante/genética , Sequência de Aminoácidos/genética , Animais , Sequência de Bases/genética , Encéfalo/metabolismo , Éxons/genética , GTP Fosfo-Hidrolases/isolamento & purificação , GTP Fosfo-Hidrolases/metabolismo , Rim/metabolismo , Fígado/metabolismo , Camundongos , Camundongos Endogâmicos C57BL , Mitocôndrias/metabolismo , Mitocôndrias/ultraestrutura , Proteínas Mitocondriais/isolamento & purificação , Proteínas Mitocondriais/metabolismo , Dados de Sequência Molecular , Miocárdio/metabolismo , Atrofia Óptica Autossômica Dominante/metabolismo , Isoformas de Proteínas/genética , Isoformas de Proteínas/isolamento & purificação , Isoformas de Proteínas/metabolismo , Células Ganglionares da Retina/metabolismo , Células Ganglionares da Retina/patologia , Frações Subcelulares
5.
Hum Genet ; 123(2): 163-76, 2008 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-18172692

RESUMO

Opitz BBB/G syndrome (OS) is a heterogenous malformation syndrome mainly characterised by hypertelorism and hypospadias. In addition, patients may present with several other defects of the ventral midline such as cleft lip and palate and congenital heart defects. The syndrome-causing gene encodes the X-linked E3 ubiquitin ligase MID1 that mediates ubiquitin-specific modification and degradation of the catalytic subunit of the translation regulator protein phosphatase 2A (PP2A). Here, we show that the MID1 protein also associates with elongation factor 1alpha (EF-1alpha) and several other proteins involved in mRNA transport and translation, including RACK1, Annexin A2, Nucleophosmin and proteins of the small ribosomal subunits. Mutant MID1 proteins as found in OS patients lose the ability to interact with EF-1alpha. The composition of the MID1 protein complex was determined by several independent methods: (1) yeast two-hybrid screening and (2) immunofluorescence, (3) a biochemical approach involving affinity purification of the complex, (4) co-fractionation in a microtubule assembly assay and (5) immunoprecipitation. Moreover, we show that the cytoskeleton-bound MID1/translation factor complex specifically associates with G- and U-rich RNAs and incorporates MID1 mRNA, thus forming a microtubule-associated ribonucleoprotein (RNP) complex. Our data suggest a novel function of the OS gene product in directing translational control to the cytoskeleton. The dysfunction of this mechanism would lead to malfunction of microtubule-associated protein translation and to the development of OS.


Assuntos
Proteínas dos Microtúbulos/genética , Microtúbulos/metabolismo , Proteínas Nucleares/genética , Fator 1 de Elongação de Peptídeos/metabolismo , RNA/metabolismo , Ribonucleoproteínas/metabolismo , Fatores de Transcrição/genética , Anexina A2/genética , Anexina A2/metabolismo , Sequência de Bases , Cromatografia de Afinidade , Imunofluorescência , Proteínas de Ligação ao GTP/genética , Proteínas de Ligação ao GTP/metabolismo , Doenças Genéticas Ligadas ao Cromossomo X/genética , Células HeLa , Humanos , Imunoprecipitação , Hibridização In Situ , Proteínas dos Microtúbulos/metabolismo , Dados de Sequência Molecular , Proteínas de Neoplasias/genética , Proteínas de Neoplasias/metabolismo , Proteínas Nucleares/metabolismo , Nucleofosmina , Fator 1 de Elongação de Peptídeos/genética , RNA Interferente Pequeno/farmacologia , Receptores de Quinase C Ativada , Receptores de Superfície Celular/genética , Receptores de Superfície Celular/metabolismo , Ribonucleoproteínas/genética , Homologia de Sequência do Ácido Nucleico , Fatores de Transcrição/metabolismo , Técnicas do Sistema de Duplo-Híbrido , Ubiquitina-Proteína Ligases
6.
Biophys Chem ; 125(1): 159-65, 2007 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-16916573

RESUMO

The mitochondrial steroid hydroxylase system of vertebrates utilizes adrenodoxin (Adx), a small iron-sulfur cluster protein of about 14 kDa as an electron carrier between a reductase and cytochrome P450. Although the crystal structure of this protein has been elucidated, the solution structure of Adx was discussed contrary in the literature [I.A. Pikuleva, K. Tesh, M.R. Waterman, Y. Kim, The tertiary structure of full-length bovine adrenodoxin suggests functional dimers, Arch. Biochem. Biophys. 373 (2000) 44-55; D. Beilke, R. Weiss, F. Löhr, P. Pristovsek, F. Hannemann, R. Bernhardt, H. Rüterjans, A new electron mechanism in mitochondrial steroid hydroxylase systems based on structural changes upon the reduction of adrenodoxin, Biochemistry 41 (2002) 7969-7978]. Therefore, it was necessary to study the self-association of this protein by using analytical ultracentrifugation over a larger concentration range. As could be demonstrated in sedimentation velocity experiments, as well as sedimentation equilibrium runs with explicit consideration of thermodynamic non-ideality, the full-length protein (residues 1-128) in the oxidized state resulted in a monomer-dimer equilibrium (K(a) approximately 3 x 10(2) M(-1)). For truncated Adx (1-108), as well as the reduced Adx, the association behavior was strongly reduced. The consequences of this behavior are discussed with respect to the physiological meaning for the Adx system.


Assuntos
Adrenodoxina/química , Estrutura Quaternária de Proteína , Oxirredução , Termodinâmica , Ultracentrifugação/métodos
7.
J Inorg Biochem ; 98(7): 1229-37, 2004 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-15219990

RESUMO

The single mitochondrial type I [2Fe-2S] ferredoxin of the fission yeast Schizosaccharomyces pombe is produced as the carboxy terminal part of the electron-transfer-protein 1 (etp1) and cleaved off during mitochondrial import [Biochemistry 41 (2002) 2311-2321]. The UV/Vis (UV-visible) spectrum of the purified recombinant ferredoxin domain (etp1(fd)) expressed in Escherichia coli is similar to those of bovine Adx in the oxidized as well as in the reduced state. EPR (electronic paramagnetic resonance) studies revealed a correctly incorporated iron-sulfur cluster of the axial type. The redox potential of this protein was determined to be -353 mV, which is considerably lower than that of adrenodoxin (Adx, -273 mV). Several lines of evidence indicate that the protein forms dimers under physiological and denaturating conditions. Interestingly, the fission yeast ferredoxin could be shown to be active as an electron carrier in heterologous redox systems. It is able to transfer electrons to horse heart cytochrome c and to bovine cytochromes P450(scc) (CYP11A1) and P450(11 beta) (CYP11B1), thereby receiving electrons from bovine NADPH-dependent Adx reductase. The kinetics of substrate conversion in the etp1(fd)-supported CYP11A1 and CYP11B1-dependent systems mediated was studied.


Assuntos
Ferredoxinas/química , Mitocôndrias/enzimologia , Proteínas de Schizosaccharomyces pombe/química , Schizosaccharomyces/enzimologia , Adrenodoxina , Sequência de Aminoácidos , Animais , Bovinos , Enzima de Clivagem da Cadeia Lateral do Colesterol/química , Ferredoxinas/genética , Dados de Sequência Molecular , Oxirredução , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Schizosaccharomyces/genética , Proteínas de Schizosaccharomyces pombe/genética , Homologia de Sequência de Aminoácidos , Esteroide 11-beta-Hidroxilase/química
8.
PLoS One ; 9(11): e111917, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-25369234

RESUMO

The extracellular membranes of the inner ear are essential constituents to maintain sensory functions, the cupula for sensing torsional movements of the head, the otoconial membrane for sensing linear movements and accelerations like gravity, and the tectorial membrane in the cochlea for hearing. So far a number of structural proteins have been described, but for the gelatinous cupula precise data are missing. Here, we describe for the first time a major proteinogenic component of the cupula structure with an apparent molecular mass of 45 kDa from salmon. Analyses of respective peptides revealed highly conserved amino-acid sequences with identity to zona pellucida-like domain proteins. Immunohistochemistry studies localized the protein in the ampulla of the inner ear from salmon and according to its anatomical appearance we identified this glycoprotein as Cupulin. Future research on structure and function of zona pellucida-like domain proteins will enhance our knowledge of inner ear diseases, like sudden loss of vestibular function and other disturbances.


Assuntos
Proteínas Aviárias/metabolismo , Orelha Interna/metabolismo , Proteínas de Peixes/metabolismo , Salmão/metabolismo , Sequência de Aminoácidos , Animais , Proteínas Aviárias/química , Galinhas , Proteínas de Peixes/química , Cobaias , Proteínas de Membrana/química , Dados de Sequência Molecular , Estrutura Terciária de Proteína , Coelhos , Homologia de Sequência de Aminoácidos
9.
Protein Eng Des Sel ; 24(1-2): 79-87, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21075772

RESUMO

The hexokinase isoenzyme 2 of Saccharomyces cerevisiae (ScHxk2) represents an archetype of a two-domain protein with the active site located in a cleft between the two domains. Binding of the substrate glucose results in a rigid body movement of the two domains leading to a cleft closure of the active site. Both domains of this enzyme are composed of discontinuous peptide sequences. This structural feature is reflected in the stability and folding of the ScHxk2 protein. Structural transitions induced by urea treatment resulted in the population of a thermodynamically stable folding intermediate, which, however, does not correspond to a molecule with one domain folded and the other unfolded. As demonstrated by different spectroscopic techniques, both domains are structurally affected by the partial denaturation. The intermediate possesses only 40% of the native secondary structural content and a substantial increase in the Stokes radius as judged by circular dichroism and dynamic light scattering analyses. One-dimensional ¹H NMR data prove that all tryptophan residues are in a non-native environment in the intermediate, indicating substantial changes in the tertiary structure. Still, the intermediate possesses quite a high stability for a transition intermediate of about ΔG = -22 kJ mol⁻¹.


Assuntos
Hexoquinase/química , Proteínas de Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/enzimologia , Modelos Moleculares , Ressonância Magnética Nuclear Biomolecular , Desnaturação Proteica , Dobramento de Proteína , Estrutura Terciária de Proteína
10.
PLoS One ; 3(7): e2780, 2008 Jul 23.
Artigo em Inglês | MEDLINE | ID: mdl-18648668

RESUMO

Eph receptors are the largest family of receptor tyrosine kinases. Together with their ligands, the ephrins, they fulfill multiple biological functions. Aberrant expression of Ephs/ephrins leading to increased Eph receptor to ephrin ligand ratios is a critical factor in tumorigenesis, indicating that tight regulation of Eph and ephrin expression is essential for normal cell behavior. The 3'-untranslated regions (3'UTRs) of transcripts play an important yet widely underappreciated role in the control of protein expression. Based on the assumption that paralogues of large gene families might exhibit a conserved organization of regulatory elements in their 3'UTRs we applied a novel bioinformatics/molecular biology approach to the 3'UTR sequences of Eph/ephrin transcripts. We identified clusters of motifs consisting of cytoplasmic polyadenylation elements (CPEs), AU-rich elements (AREs) and HuR binding sites. These clusters bind multiple RNA-stabilizing and destabilizing factors, including HuR. Surprisingly, despite its widely accepted role as an mRNA-stabilizing protein, we further show that binding of HuR to these clusters actually destabilizes Eph/ephrin transcripts in tumor cell lines. Consequently, knockdown of HuR greatly modulates expression of multiple Ephs/ephrins at both the mRNA and protein levels. Together our studies suggest that overexpression of HuR as found in many progressive tumors could be causative for disarranged Eph receptor to ephrin ligand ratios leading to a higher degree of tissue invasiveness.


Assuntos
Antígenos de Superfície/metabolismo , Efrina-A1/metabolismo , Efrina-B2/metabolismo , Regulação Neoplásica da Expressão Gênica , Proteínas de Ligação a RNA/metabolismo , Receptores da Família Eph/biossíntese , Regiões 3' não Traduzidas , Motivos de Aminoácidos , Animais , Sequência de Bases , Linhagem Celular Tumoral , Citoplasma/metabolismo , Proteínas ELAV , Proteína Semelhante a ELAV 1 , Humanos , Camundongos , Dados de Sequência Molecular , Homologia de Sequência do Ácido Nucleico
11.
FEMS Yeast Res ; 8(6): 858-69, 2008 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18637841

RESUMO

The proteolytic potential of the pathogenic fungus Candida albicans was evaluated by the identification and functional characterization of a peptidolytic enzyme isolated from the cell wall of the microorganism. Determination of basic structural and kinetic data identified a neutral arginine/alanine/leucine-specific metallo-aminopeptidase of unknown function termed CaApe2, which is encoded by ORF CaO19.5197 (GenBank RefSeq XM_705313). Mass spectrometric tryptic peptide analysis and N-terminal protein sequencing revealed serine-88 to represent the N-terminus of CaApe2. Taking into account the results of DNA and protein sequence analysis including inspection of the genomic region upstream of ORF CaO19.5197, the gene CaAPE2 is likely to consist of two exons linked by a phase-2 intron with exons 1 and 2 encoding a signal peptide and the amino acids 88-954 of ORF CaO19.5197, respectively. The isolated CaApe2 protein shares an equally high similarity with the gene products ScAap1 and ScApe2, suggesting duplication of a phylogenetically ancient precursor gene in Saccharomyces cerevisiae. The observed failure to cleave human type-I and type-IV collagen in vitro challenges a direct role that secreted CaApe2 might play in the degradation of extracellular matrix components during host colonization, but does not exclude per se a contribution of the aminopeptidase to the pathogenicity of C. albicans.


Assuntos
Aminopeptidases , Candida albicans/enzimologia , Parede Celular/metabolismo , Alanina/química , Sequência de Aminoácidos , Aminopeptidases/química , Aminopeptidases/genética , Aminopeptidases/isolamento & purificação , Aminopeptidases/metabolismo , Arginina/química , Sequência de Bases , Candida albicans/genética , Candida albicans/crescimento & desenvolvimento , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Proteínas Fúngicas/imunologia , Proteínas Fúngicas/metabolismo , Concentração de Íons de Hidrogênio , Cinética , Leucil Aminopeptidase/química , Leucil Aminopeptidase/genética , Leucil Aminopeptidase/isolamento & purificação , Leucil Aminopeptidase/metabolismo , Dados de Sequência Molecular , Especificidade por Substrato , Temperatura
12.
FEMS Yeast Res ; 7(5): 683-92, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17573926

RESUMO

Recent data suggest that hexokinase KlHxk1 (Rag5) represents the only glucose-phosphorylating enzyme of Kluyveromyces lactis, which also is required for glucose signalling. Long-term growth studies of a K. lactis rag5 mutant, however, reveal slow growth on glucose, but no growth on fructose. Isolation of the permissive glucose-phosphorylating enzyme, mass spectrometric tryptic peptide analysis and determination of basic kinetic data identify a novel glucokinase (KlGlk1) encoded by ORF KLLA0C01,155g. In accordance with the growth characteristics of the rag5 mutant, KlGlk1 phosphorylates glucose, but fails to act on fructose as a sugar substrate. Multiple sequence alignment indicates the presence of at least one glucokinase gene in all sequenced yeast genomes.


Assuntos
Regulação Fúngica da Expressão Gênica , Glucoquinase , Kluyveromyces/enzimologia , Sequência de Aminoácidos , Frutose/metabolismo , Proteínas Fúngicas/química , Proteínas Fúngicas/genética , Proteínas Fúngicas/isolamento & purificação , Proteínas Fúngicas/metabolismo , Glucoquinase/química , Glucoquinase/genética , Glucoquinase/isolamento & purificação , Glucoquinase/metabolismo , Glucose/metabolismo , Humanos , Kluyveromyces/genética , Kluyveromyces/crescimento & desenvolvimento , Dados de Sequência Molecular , Fosforilação , Filogenia , Alinhamento de Sequência , Especificidade por Substrato
13.
Mol Cell Proteomics ; 5(2): 234-44, 2006 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-16275660

RESUMO

Proteins mediate their biological function through interactions with other proteins. Therefore, the systematic identification and characterization of protein-protein interactions have become a powerful proteomic strategy to understand protein function and comprehensive cellular regulatory networks. For the screening of valosin-containing protein, carboxyl terminus of Hsp70-interacting protein (CHIP), and amphiphysin II interaction partners, we utilized a membrane-based array technology that allows the identification of human protein-protein interactions with crude bacterial cell extracts. Many novel interaction pairs such as valosin-containing protein/autocrine motility factor receptor, CHIP/caytaxin, or amphiphysin II/DLP4 were identified and subsequently confirmed by pull-down, two-hybrid and co-immunoprecipitation experiments. In addition, assays were performed to validate the interactions functionally. CHIP e.g. was found to efficiently polyubiquitinate caytaxin in vitro, suggesting that it might influence caytaxin degradation in vivo. Using peptide arrays, we also identified the binding motifs in the proteins DLP4, XRCC4, and fructose-1,6-bisphosphatase, which are crucial for the association with the Src homology 3 domain of amphiphysin II. Together these studies indicate that our human proteome array technology permits the identification of protein-protein interactions that are functionally involved in neurodegenerative disease processes, the degradation of protein substrates, and the transport of membrane vesicles.


Assuntos
Proteínas de Ciclo Celular/química , Proteínas de Ciclo Celular/metabolismo , Proteínas de Choque Térmico HSC70/metabolismo , Proteínas do Tecido Nervoso/metabolismo , Análise Serial de Proteínas , Mapeamento de Interação de Proteínas , Proteoma , Adenosina Trifosfatases , Sequência de Aminoácidos , Animais , Células COS , Chlorocebus aethiops , Humanos , Membranas Artificiais , Dados de Sequência Molecular , Ligação Proteica , Estrutura Terciária de Proteína , Proteína com Valosina
14.
EMBO J ; 24(5): 875-84, 2005 Mar 09.
Artigo em Inglês | MEDLINE | ID: mdl-15692564

RESUMO

BET3 is a component of TRAPP, a complex involved in the tethering of transport vesicles to the cis-Golgi membrane. The crystal structure of human BET3 has been determined to 1.55-A resolution. BET3 adopts an alpha/beta-plait fold and forms dimers in the crystal and in solution, which predetermines the architecture of TRAPP where subunits are present in equimolar stoichiometry. A hydrophobic pocket within BET3 buries a palmitate bound through a thioester linkage to cysteine 68. BET3 and yeast Bet3p are palmitoylated in recombinant yeast cells, the mutant proteins BET3 C68S and Bet3p C80S remain unmodified. Both BET3 and BET3 C68S are found in membrane and cytosolic fractions of these cells; in membrane extractions, they behave like tightly membrane-associated proteins. In a deletion strain, both Bet3p and Bet3p C80S rescue cell viability. Thus, palmitoylation is neither required for viability nor sufficient for membrane association of BET3, which may depend on protein-protein contacts within TRAPP or additional, yet unidentified modifications of BET3. A conformational change may facilitate palmitoyl extrusion from BET3 and allow the fatty acid chain to engage in intermolecular hydrophobic interactions.


Assuntos
Proteínas de Membrana/química , Proteínas de Transporte Vesicular/química , Sequência de Aminoácidos , Cristalografia por Raios X , Dimerização , Humanos , Técnicas In Vitro , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Molecular , Mutagênese Sítio-Dirigida , Ácido Palmítico/química , Conformação Proteica , Estrutura Quaternária de Proteína , Subunidades Proteicas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Homologia de Sequência de Aminoácidos , Eletricidade Estática , Proteínas de Transporte Vesicular/genética , Proteínas de Transporte Vesicular/metabolismo
15.
EMBO J ; 21(22): 6216-24, 2002 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-12426393

RESUMO

Transport of proteins and RNA into and out of the cell nucleus is mediated largely by a family of RanGTP-binding transport receptors. Export receptors (exportins) need to bind RanGTP for efficient loading of their export cargo. We have identified eukaryotic elongation factor 1A (eEF1A) and tRNA as RanGTP-dependent binding partners of exportin-5 (Exp5). Exp5 stimulates nuclear export of eEF1A when microinjected into the nucleus of Xenopus laevis oocytes. Surprisingly, the interaction between eEF1A and Exp5 is dependent on tRNA that can interact directly with Exp5 and, if aminoacylated, recruits eEF1A into the export complex. These data suggested to us that Exp5 might support tRNA export. Indeed, not only the canonical tRNA export receptor, exportin-t, but also Exp5 can drive nuclear export of tRNA. Taken together, we show that there exists an alternative tRNA export pathway which can be exploited to keep eEF1A out of the cell nucleus.


Assuntos
Transporte Ativo do Núcleo Celular/fisiologia , Núcleo Celular/metabolismo , Citoplasma/metabolismo , Guanosina Trifosfato/metabolismo , Carioferinas/fisiologia , Fator 1 de Elongação de Peptídeos/metabolismo , Aminoacil-RNA de Transferência/metabolismo , Proteína ran de Ligação ao GTP/metabolismo , Sequência de Aminoácidos , Animais , Transporte Biológico , Células Cultivadas , Clonagem Molecular , Fatores de Iniciação em Eucariotos/metabolismo , Etiquetas de Sequências Expressas , Células HeLa , Humanos , Carioferinas/genética , Substâncias Macromoleculares , Camundongos , Microinjeções , Dados de Sequência Molecular , Oócitos , Mapeamento de Interação de Proteínas , Proteínas Recombinantes de Fusão/fisiologia , Xenopus laevis
16.
Proteomics ; 4(10): 2969-81, 2004 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-15378754

RESUMO

Chlamydophila pneumoniae is an obligate intracellular pathogen implicated in a variety of acute and chronic diseases. Long-term infections are associated with a persistent life stage, in which bacteria can stay for years. They are less accessible to antibiotic treatment but still prone to sustain an inflammatory response. Different in vitro models have been established to mimic and characterize chlamydial persistency. For C. pneumoniae and Chlamydia trachomatis, altered metabolic activities and changed antigenic profiles compared to acute infections have been reported. Most studies including transcriptome and proteome analyses describe persistency induced by IFNgamma treatment. Here, we use iron depletion of the infected cell culture that also leads into persistent infection. We describe differently regulated proteins found by subtractive proteome analysis comparing two early stages of infection with and without addition of the iron chelator deferoxamine-mesylate. While only one bacterial protein was up-regulated during iron deficiency up to 24 h post infection (p.i.), 11 were found to be up-regulated and eight to be down-regulated from 24-48 h p.i. Two down-regulated proteins could be identified by peptide mass fingerprinting as thioredoxin reductase and chromosome partitioning protein (ParB). The latter is involved in chromosome segregation. Thus, using a comparative approach we identified on a proteome level down-regulation of ParB in persistent chlamydial forms, which is in agreement with previous results describing changes in cell division and atypical altered morphology of persistent Chlamydiae.


Assuntos
Infecções por Chlamydophila/metabolismo , Chlamydophila pneumoniae/metabolismo , Regulação Bacteriana da Expressão Gênica , Genes Bacterianos , Deficiências de Ferro , Proteoma , Sequência de Aminoácidos , Antígenos de Bactérias , Autorradiografia , Fenômenos Fisiológicos Bacterianos , Divisão Celular , Linhagem Celular , Infecções por Chlamydophila/genética , Regulação para Baixo , Eletroforese em Gel Bidimensional , Epitélio/microbiologia , Corantes Fluorescentes/farmacologia , Humanos , Interferon gama/metabolismo , Espectrometria de Massas , Dados de Sequência Molecular , Espectrometria de Massas por Ionização por Electrospray , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Fatores de Tempo , Tripsina/farmacologia , Regulação para Cima
17.
Appl Environ Microbiol ; 70(2): 1040-50, 2004 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-14766587

RESUMO

We analyzed the biochemical composition of the magnetosome membrane (MM) in Magnetospirillum gryphiswaldense. Isolated magnetosomes were associated with phospholipids and fatty acids which were similar to phospholipids and fatty acids from other subcellular compartments (i.e., outer and cytoplasmic membranes) but were present in different proportions. The binding characteristics of MM-associated proteins were studied by selective solubilization and limited proteolysis. The MM-associated proteins were further analyzed by various proteomic approaches, including one- and two-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis followed by Edman and mass spectrometric (electrospray ionization-mass spectrometry-mass spectrometry) sequencing, as well as capillary liquid chromatography-mass spectrometry-mass spectrometry of total tryptic digests of the MM. At least 18 proteins were found to constitute the magnetosome subproteome, and most of these proteins are novel for M. gryphiswaldense. Except for MM22 and Mms16, all bona fide MM proteins (MMPs) were encoded by open reading frames in the mamAB, mamDC, and mms6 clusters in the previously identified putative magnetosome island. Eight of the MMPs display homology to known families, and some of them occur in the MM in multiple homologues. Ten of the MMPs have no known homologues in nonmagnetic organisms and thus represent novel, magnetotactic bacterium-specific protein families. Several MMPs display repetitive or highly acidic sequence patterns, which are known from other biomineralizing systems and thus may have relevance for magnetite formation.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Compostos Férricos , Membranas Intracelulares/metabolismo , Magnetospirillum/ultraestrutura , Proteoma , Sequência de Aminoácidos , Proteínas de Bactérias/química , Compostos Férricos/química , Compostos Férricos/metabolismo , Membranas Intracelulares/química , Magnetospirillum/metabolismo , Espectrometria de Massas , Proteínas de Membrana/química , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Dados de Sequência Molecular
18.
J Biol Chem ; 278(13): 11536-45, 2003 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-12502714

RESUMO

Class I phosphoinositide 3-kinases (PI3Ks) are bifunctional enzymes possessing lipid kinase activity and the capacity to phosphorylate their catalytic and/or regulatory subunits. In this study, in vitro autophosphorylation of the G protein-sensitive p85-coupled class I(A) PI3K beta and p101-coupled class I(B) PI3K gamma was examined. Autophosphorylation sites of both PI3K isoforms were mapped to C-terminal serine residues of the catalytic p110 subunit (i.e. serine 1070 of p110 beta and serine 1101 of p110 gamma). Like other class I(A) PI3K isoforms, autophosphorylation of p110 beta resulted in down-regulated PI3K beta lipid kinase activity. However, no inhibitory effect of p110 gamma autophosphorylation on PI3K gamma lipid kinase activity was observed. Moreover, PI3K beta and PI3K gamma differed in the regulation of their autophosphorylation. Whereas p110 beta autophosphorylation was stimulated neither by G beta gamma complexes nor by a phosphotyrosyl peptide derived from the platelet-derived growth factor receptor, autophosphorylation of p110 gamma was significantly enhanced by G beta gamma in a time- and concentration-dependent manner. In summary, we show that autophosphorylation of both PI3K beta and PI3K gamma occurs in a C-terminal region of the catalytic p110 subunit but differs in its regulation and possible functional consequences, suggesting distinct roles of autophosphorylation of PI3K beta and PI3K gamma.


Assuntos
Isoenzimas/metabolismo , Fosfatidilinositol 3-Quinases/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Catálise , Linhagem Celular , Primers do DNA , Humanos , Isoenzimas/química , Dados de Sequência Molecular , Fosfatidilinositol 3-Quinases/química , Fosforilação , Proteínas Recombinantes/metabolismo , Homologia de Sequência de Aminoácidos , Serina/metabolismo , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
19.
Blood ; 100(5): 1817-27, 2002 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-12176905

RESUMO

Crystal-storing histiocytosis (CSH) is a rare event in disorders associated with monoclonal gammopathy. The intracellular crystal formation is almost always accompanied by the expression of kappa light chains. However, the exact mechanism for the storage has not been clarified until now. We report a case of generalized CSH in a 73-year-old man who presented with IgA kappa paraproteinemia and paraproteinuria. The initially observed CSH in the bone marrow biopsy was associated with the clinical and pathomorphologic features of a monoclonal gammopathy of undetermined significance. The progression of disease could not be affected by steroid therapy and the patient died of septic shock 7 months after detection of CSH. At the time of autopsy there was evidence for multiple myeloma and generalized CSH. Two-dimensional gel electrophoresis of liver tissue combined with immunoblotting revealed the massive storage of heavy chains of alpha type and light chains of kappa type, each in a monoclonal pattern. Analysis of the stored kappa light chain by nanoelectrospray-ionization mass spectrometry indicated that it belongs to the variable (kappa)I variability subgroup. We identified some unusual amino acid substitutions including Leu59, usually important for hydrophobic interactions within a protein, at a position where it has never been previously described in plasma cell disorders. In conclusion, we present the first case of CSH with molecular identification of the stored kappa subgroup and detection of unusual amino acid substitutions. Our results suggest that conformational alterations induced by amino acid exchanges represent a crucial pathogenic factor in CSH.


Assuntos
Histiocitose de Células de Langerhans , Imunoglobulina A/imunologia , Paraproteinemias , Idoso , Biópsia , Medula Óssea/patologia , Evolução Fatal , Genes de Imunoglobulinas , Histiocitose de Células de Langerhans/complicações , Histiocitose de Células de Langerhans/imunologia , Histiocitose de Células de Langerhans/patologia , Humanos , Imunoglobulina A/genética , Cadeias kappa de Imunoglobulina/genética , Cadeias kappa de Imunoglobulina/imunologia , Masculino , Mieloma Múltiplo/patologia , Paraproteinemias/complicações , Paraproteinemias/imunologia , Paraproteinemias/patologia
20.
Mol Cell ; 10(2): 247-58, 2002 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-12191471

RESUMO

Caspases play a central role in apoptosis, but their activity is under the control of caspase-inhibiting proteins. A characteristic of caspase-inhibiting proteins is direct caspase binding. It is yet unknown how the localization of caspase-inhibiting proteins is regulated and whether there are upstream signals controlling their function. Here we report that the function of ARC is regulated by protein kinase CK2. ARC at threonine 149 is phosphorylated by CK2. This phosphorylation targets ARC to mitochondria. ARC is able to bind to caspase-8 only when it is localized to mitochondria but not to the cytoplasm. Our results reveal a molecular mechanism by which a caspase-inhibiting protein requires phosphorylation in order to prevent apoptosis.


Assuntos
Inibidores de Caspase , Proteínas Imediatamente Precoces/metabolismo , Proteínas Serina-Treonina Quinases/metabolismo , Transdução de Sinais , Animais , Apoptose , Caseína Quinase II , Caspase 8 , Caspase 9 , Caspases/metabolismo , Linhagem Celular , Citoplasma/metabolismo , Proteínas do Citoesqueleto , Humanos , Proteínas Imediatamente Precoces/genética , Mitocôndrias/metabolismo , Músculo Esquelético/metabolismo , Miocárdio/citologia , Miocárdio/metabolismo , Proteínas do Tecido Nervoso/antagonistas & inibidores , Proteínas do Tecido Nervoso/metabolismo , Fosforilação , Fosfotirosina/metabolismo , Ligação Proteica , Transporte Proteico , Ratos , Ratos Wistar , Fatores de Tempo
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