An Expeditious Approach towards the Synthesis and Application of Water-Soluble and Photostable Fluorogenic Chromones for DNA Detection.

The intensive research for hybridization probes based on organic molecules with fluorogenic properties is currently attracting particular attention due to their potential to efficiently recognize different DNA conformations and the local environment. However, most established organic chromophores do not meet the requirements of this task, as they do not exhibit good brightness in aqueous buffer media, develop aggregation and/or are not easily conjugated to oligodeoxynucleotides (ODNs) while keeping their photophysics intact. Herein, an important modification strategy was employed for a well-known fluorophore, 2-(4-(diethylamino)phenyl)-3-hydroxychromone (dEAF). Although this push-pull dye absorbs intensively in the visible range and shows emission with large Stokes shifts in all organic solvents, it is strongly quenched in water. This Achilles' heel prompted us to implement a new strategy to obtain a series of dyes that retain all the photophysical features of dEAF in water, conjugate readily with oligonucleotides, and furthermore demonstrate sensitivity to hydration, thus paving the way for a high-performance fluorogenic DNA hybridization probe.

Direct Transition from Triplet Excitons to Hybrid Light-Matter States via Triplet-Triplet Annihilation.

Strong light-matter coupling generates hybrid states that inherit properties of both light and matter, effectively allowing the modification of the molecular potential energy landscape. This phenomenon opens up a plethora of options for manipulating the properties of molecules, with a broad range of applications in photochemistry and photophysics. In this article, we use strong light-matter coupling to transform an endothermic triplet-triplet annihilation process into an exothermic one. The resulting gradual on-off photon upconversion experiment demonstrates a direct conversion between molecular states and hybrid light-matter states. Our study provides a direct evidence that energy can relax from nonresonant low energy molecular states directly into hybrid light-matter states and lays the groundwork for tunable photon upconversion systems that modify molecular properties in situ by optical cavities rather than with chemical modifications.

A Highly Conductive All-Carbon Linked 3D Covalent Organic Framework Film.

Here an all-carbon linked 3D covalent organic framework (COF) is introduced by employing a templated surface reaction in a continuous flow (TSRCF). The presented method of synthesis provides spatial control over the reaction chemistry and allows for the creation of ultrasmooth COF films of desired thickness and significant crystallinity. The films show high electrical conductivity (≈3.4 S m-1 ) after being doped with tetracyanoquinodimethane (TCNQ), setting a new record for 3D COF materials. The concurrence of 3D nanosized channels and high conductivity opens up for a number of hitherto unexplored applications for this class of materials, such as high surface area electrodes, electrochemical transistors, and for electronic sensing.

Electronic Coupling and Electron Transfer between Two Mo2 Units through meta- and para-Phenylene Bridges.

A series of three Mo2 dimers bridged by a meta-phenylene group has been studied in terms of electronic coupling (EC) and electron transfer (ET) in comparison with the para isomers. Optical analyses on the mixed-valence complexes indicate that by replacing a para-phenylene bridge with a meta one, the EC between the two Mo2 centers is dramatically weakened; consequently, the ET rates (ket ) are lowered by two to three orders of magnitude. In the para series, the EC parameters (Hab ) and ET rates (ket ) are greatly affected by O/S atomic alternation of the bridging ligand. However, for the meta analogues, similar EC and ET parameters are obtained, that is, Hab =300-400 cm-1 and ket ≈109  s-1 . These results suggest that through-σ-bond and/or through-space coupling channels become operative as the π conjugation is disabled. DFT calculations reveal that destructive quantum interference features seen for the meta series arise from the cancellation of two π-conjugated coupling pathways.

Mapping Bridge Conformational Effects on Electronic Coupling in Mo2-Mo2 Mixed-Valence Systems.

The large bridging ligand 9,10-anthracenedicarboxylate and its thiolated derivatives have been employed to assemble two dimolybdenum complex units and develop three Mo2 dimers, [Mo2(DAniF)3]2(µ-9,10-O2CC14H8CO2), [Mo2(DAniF)3]2(µ-9,10-OSCC14H8COS), and [Mo2(DAniF)3]2(µ-9,10-S2CC14H8CS2) (DAniF = N, N'-di( p-anisyl)formamidinate), for the study of conformation dependence of the electronic coupling between the two Mo2 centers. These compounds feature a large deviation of the central anthracene ring from the plane defined by the Mo-Mo bond vectors, with the torsion angles (ϕ = 50-76°) increasing as the chelating atoms of the bridging ligand vary from O to S. Consequently, the corresponding mixed-valence complexes do not exhibit characteristic intervalence charge transfer absorptions in the near-IR spectra, in contrast to the phenylene and naphthalene analogues, from which these systems are assigned to the Class I in Robin-Day's scheme. Together with the phenylene and naphthalene series, the nine total mixed-valence complexes in three series complete a transition from the electronically uncoupled Class I to the strongly coupled Class II-III borderline via moderately coupled Class II and permit a systematic mapping of the bridge conformation effects on electronic coupling. Density functional theory calculations show that the HOMO-LUMO energy gap, corresponding to the metal (δ) to ligand (π*) transition energy, and the magnitude of HOMO-HOMO-1 splitting in energy are linearly related to cos2 ϕ. Therefore, our experimental and theoretical results concur to indicate that the coupling strength decreases in the order of the bridging units: phenylene > naphthalene > anthracene, which verifies the through-bond superexchange mechanism for electronic coupling and electron transfer.

Charge Transfer Properties of Triarylamine Integrated Dimolybdenum Dyads.

Three quadruply bonded dimolybdenum complexes equipped with a triarylamine pendant, [(DAniF)3Mo2(µ-O2CC6H4N(C6H4CH3)2] (DAniF = N,N'-di(p-anisyl)formamidinate; [OO-ph-N]), [(DAniF)3Mo2(µ-OSCC6H4N(C6H4CH3)2] ([OS-ph-N]), and [(DAniF)3Mo2(µ-S2CC6H4N(C6H4CH3)2] ([SS-ph-N]), have been synthesized and characterized by single crystal X-ray diffraction. In electrochemical measurements, the redox couple for the organic amine group becomes irreversible, reflecting the substantially strong electronic interaction between the dimetal center and organic redox site. The potential difference for the two successive redox events, ca. ΔE1/2(E1/2(2)(N/N•+) - E1/2(1)(Mo2IV/V)), falls in the range of 0.5-0.8 V as estimated from the differential pulse voltammograms. For the monocation radicals [OO-ph-N]+, [OS-ph-N]+, and [SS-ph-N]+, obtained by chemical oxidation of the neutral precursor, a broad ligand (amine) to metal (Mo2) charge transfer (LMCT) absorption band is observed in the near-IR region. Interestingly, analogous to the intervalence charge transfer (IVCT) bands for mixed-valence complexes, the LMCT absorption bands, which are solvent dependent, decrease in energy and bandwidth as the electronic coupling between the two redox sites increases in an order of increasing S content in the chelating group. The electronic coupling matrix elements (Hab) are determined by optical analyses from the generalized Mulliken-Hush (GMH) theory, falling in the range of 400-800 cm-1 in CH2Cl2. These results indicate that in these radical cations the charge is localized. Time-dependent DFT calculations show that the frontier molecular orbitals for these asymmetrical donor-acceptor systems have unbalanced distribution of electron density, and the LMCT bands arise from an electronic transition from the pendant ligand-based to metal-based molecular orbitals, corresponding to donor (N)-acceptor (Mo2) charge transfer.

Aromaticity-Driven Molecular Structural Variation and Electronic Configuration Alternation: An Example of Cyclic π Conjugation Involving a Mo-Mo δ Bond.

We have synthesized and characterized the mixed-ligand dimolybdenum paddlewheel complex Na[(DAniF)3Mo2(C3S5)] (Na[1]; DAniF = N,N'-di-p-anisylformamidinate, dmit = 1,3-dithiole-2-thione-4,5-dithiolate), which has a six-membered chelating [Mo2S2C2] ring created by equatorial coordination of the dmit (C3S5) ligand to the Mo2 unit. One-electron oxidation of Na[1] using Cp2FePF6 yields the neutral complex [(DAniF)3Mo2(C3S5)] ([1]), and removal of two electrons from Na[1] using AgBPh4 gives [(DAniF)3Mo2(C3S5)]BPh4 ([1]BPh4). In the crystal structures, [1]- and [1] present dihedral angles of 118.9 and 142.3° between the plane defined by the Mo-Mo bond vector and the dmit ligand, respectively, while DFT calculations show that in [1]+ the Mo-Mo bond and the dmit ligand are coplanar. Complex [1] is paramagnetic with a g value of 1.961 in the EPR spectrum and has a Mo-Mo bond distance of 2.133(1) Å, increased from 2.0963(9) Å for [1]-. Consistently, a broad absorption band is observed for [1] in the near-IR region, which arises from charge transfer from the dmit ligand to the cationic Mo25+ centers. Interestingly, complex [1]+ has an aromatic [Mo2S2C2] core, as evidenced by a large diamagnetic anisotropy, in addition to the coplanarity of the core structure, which shifts downfield the 1H NMR signal of the horizontal methine proton (ArN-(CH)-NAr) but upfield those of the vertical protons, relative to the methine proton resonances for the precursor ([1]-). The magnetic anisotropy (Δχ = χ⊥ - χ∥) for the [Mo2S2C2] ring in [1]+ is -105.5 ppm cgs, calculated from the McConnell equation, which is about 2-fold larger than that for benzene. The aromaticity of the [Mo2S2C2] ring is supported by theoretical studies, including single-point calculations and gauge-including atomic orbital (GIAO) NMR spectroscopic calculations at the density functional theory (DFT) level. DFT calculations also show that the [Mo2S2C2] core in [1]+ possesses a set of three highest occupied and three lowest unoccupied molecular orbitals in π character, corresponding to those of benzene in symmetry, and six π electrons that conform to the Hückel 4n + 2 rule for aromaticity. Therefore, this study shows that an aromatic [Mo2S2C2] core is formed by coupling the δ orbital of the Mo≣Mo bond with the π orbital of the C═C bond through the bridging atoms (S), thus validating the equivalency in bonding functionality between δ and π orbitals.

Spectroscopic investigation of bio-mimetic solvolysis of 6-(N,N-dimethylamino)-2,3-naphthalic anhydride in confined nanocavities.

Enzymes are biological catalysts that can vastly accelerate the reaction rate of a substrate by accommodating it within the active site. The local environment provided by the active site of a natural catalyst causes a significant rate-enhancement of the reaction as compared to that without catalyst. The solvolysis reaction of a 6-(N,N-dimethylamino)-2,3-naphthalic anhydride probe is investigated using UV-Vis and fluorescence spectroscopy in pure alcohols and in bio-mimetic nano-sized environments like surfactants, macrocyclic hosts and protein nanocavities. The solvolysis rate in alcohols is found to be regulated directly by the alkyl chain length and follows Arrhenius dependence. The hydrolysis rate of the probe in water under physiological conditions (pH 7.4, at 25 °C) is very slow. However, under identical conditions, the rate can be accelerated significantly by protein and supramolecular nanocavities. Therefore, such fundamental kinetic analysis of the understanding of this bio-mimetic solvolysis will allow us to design a novel probe-drug conjugate with efficient controlled-release and function.

A ratiometric fluorescent probe for detection of biogenic primary amines with nanomolar sensitivity.

An ultrasensitive ratiometric fluorescent sensor made of an N,N-dimethylaminonaphthalene anhydride moiety for detection of aliphatic primary amines is reported. Biogenic amines at nanomolar concentration is detected with the additional ability to discriminate between primary, secondary and tertiary amines by using both UV-Visible and fluorescence spectroscopy.

Investigation of the effect of cucurbit[7]uril complexation on the photophysical and acid-base properties of the antimalarial drug quinine.

Host-guest complexation of mono and dicationic quinine with cucurbit[7]uril (CB7), a water-soluble macrocyclic host molecule, has been investigated. Job's plot, time-resolved anisotropy as well as concentration dependent NMR titration confirm the binding of two CB7 macrocycles with one quinine molecule. The binding affinity of dicationic quinine with CB7 is one order of magnitude higher than the binding constant of mono-cationic quinine. Such preferential binding results in one unit pKa shift in the ground-state of the quinoline ring. However, using fluorescence spectroscopy we have obtained two acid-dissociation constants, one for quinoline ring nitrogen and the other for the nitrogen of the quinuclidine moiety. In the excited state, CB7 complexation causes one unit pKa shift for the quinoline ring and 1.9 unit shift for the quinuclidine moiety. Interestingly, a large enhancement of fluorescence lifetime and anisotropy of quinine at pH 2.7 and pH 9.0 upon CB7 complexation was observed due to the restriction of conformational flexibility. Moreover, at pH 3.0, a large fluorescence enhancement of quinine due to CB7 complexation was observed and it was quite significant as compared to that of quinine in 0.1 (M) HCl without CB7. We believe that this study of quinine complexation with CB7 will reduce phototoxicity, increase bioavailability and offer an alternative standard for quantum yield measurements in an amiable condition.

Complexation induced fluorescence and acid-base properties of dapoxyl dye with γ-cyclodextrin: a drug-binding application using displacement assays.

Host-guest complexation of dapoxyl sodium sulphonate (DSS), an intramolecular charge transfer dye with water-soluble and non-toxic macrocycle γ-cyclodextrin (γ-CD), has been investigated in a wide pH range. Steady-state absorption, fluorescence and time-resolved fluorescence measurements confirm the positioning of DSS into the hydrophobic cavity of γ-CD. A large fluorescence enhancement ca. 30 times, due to 1 : 2 complex formation and host-assisted guest-protonation have been utilised for developing a method for the utilisation of CD based drug-delivery applications. A simple fluorescence-displacement based approach is implemented at physiological pH for the assessment of binding strength of pharmaceutically useful small drug molecules (ibuprofen, paracetamol, methyl salicylate, salicylic acid, aspirin, and piroxicam) and six important antibiotic drugs (resazurin, thiamphenicol, chloramphenicol, ampicillin, kanamycin, and sorbic acid) with γ-CD.

Understanding feeding competition under laboratory conditions: Rohu (Labeo rohita) versus Amazon sailfin catfish (Pterygoplichthys spp.).

Competitive interactions between species is widely prevalent within the animal world. In this manuscript, we attempted to understand feeding competitions between the Amazon sailfin catfish, an invasive species introduced globally, and rohu, a keystone species native to several countries within southeast Asia. We used two different size classes of each species, large-size having total length (TL, from snout tip to caudal fin) of 15-20 cm and fingerling having TL<6 cm, and feeding duration was used as a proxy to understand competition. Our results demonstrated that feeding durations of large-size rohu were either similar or significantly (P<0.05) higher in presence of catfish when compared to trials in presence of conspecifics, indicating that large-size rohu is not a weak competitor. However, feeding durations of fingerling rohu was significantly (P<0.05) reduced in presence of both large-size and fingerling catfish, when compared to trials in presence of conspecifics. Moreover, fingerling rohu also displayed freeze (alarm) behavior in presence of the catfish. Interestingly, presence of rohu had no significant (P>0.05) impact on feeding durations of catfish. Overall, the study demonstrated that invasive catfish may behaviorally outcompete fingerling rohu, thus, threatening the sustenance of a species that is native to several freshwaters around the globe.

Interplay between Polaritonic and Molecular Trap States.

Strong exciton-photon coupling exhibits the possibility to modify the photophysical properties of organic molecules. This is due to the introduction of hybrid light-matter states, called polaritons, which have unique physical and optical properties. Those strongly coupled systems provide altered excited-state dynamics in comparison to the bare molecule case. In this study, we investigate the interplay between polaritonic and molecular trap states, such as excimers. The molecules used in this study show either prompt or delayed emission from trap states. For both cases, a clear dependency on the exciton-photon energy tuning was observed. Polaritonic emission gradually increased with a concurrent removal of aggregation-induced emission when the systems were tuned toward lower energies. For prompt emission, it is not clear whether the experimental results are best explained by a predominant relaxation toward the lower polariton after excitation or by a direct excimer to polariton transition. However, for the delayed emission case, trap states are formed on the initially formed triplet manifold, making it evident that an excimer-to-polariton transition has occurred. These results unveil the possibility to control the trap state population by creating a strongly coupled system, which may form a mitigation strategy to counteract detrimental trap states in photonic applications.

A single solvating benzene molecule decouples the mixed-valence complex through intermolecular orbital interactions.

Characterization of covalency of intermolecular interactions in the van der Waals distance limit remains challenging because the interactions between molecules are weak, dynamic, and not measurable. Herein, we approach this issue in a series of supramolecular mixed-valence (MV) donor(D)-bridge(B)-acceptor(A) systems consisting of two bridged Mo2 units with a C6H6 molecule encapsulated, as characterized by the X-ray crystal structures. Comparative analysis of the intervalence charge transfer spectra in benzene and dichloromethane substantiates the strong electronic decoupling effect of the solvating C6H6 molecule that breaks down the dielectric solvation theory. Ab initio and DFT calculations unravel that the intermolecular orbital overlaps between the complex bridge and the C6H6 molecule alter the electronic states of the D-B-A molecule through intermolecular nuclear dynamics. This work exemplifies that site-specific intermolecular interaction can be exploited to control the chemical property of supramolecular systems and to elucidate the functionalities of side-chains in biological systems.

Barrier-free reverse-intersystem crossing in organic molecules by strong light-matter coupling.

Strong light-matter coupling provides the means to challenge the traditional rules of chemistry. In particular, an energy inversion of singlet and triplet excited states would be fundamentally remarkable since it would violate the classical Hund's rule. An organic chromophore possessing a lower singlet excited state can effectively harvest the dark triplet states, thus enabling 100% internal quantum efficiency in electrically pumped light-emitting diodes and lasers. Here we demonstrate unambiguously an inversion of singlet and triplet excited states of a prototype molecule by strong coupling to an optical cavity. The inversion not only implies that the polaritonic state lies at a lower energy, but also a direct energy pathway between the triplet and polaritonic states is opened. The intrinsic photophysics of reversed-intersystem crossing are thereby completely overturned from an endothermic process to an exothermic one. By doing so, we show that it is possible to break the limit of Hund's rule and manipulate the energy flow in molecular systems by strong light-matter coupling. Our results will directly promote the development of organic light-emitting diodes based on reversed-intersystem crossing. Moreover, we anticipate that it provides the pathway to the creation of electrically pumped polaritonic lasers in organic systems.

Vitrification of octonary perylene mixtures with ultralow fragility.

Strong glass formers with a low fragility are highly sought-after because of the technological importance of vitrification. In the case of organic molecules and polymers, the lowest fragility values have been reported for single-component materials. Here, we establish that mixing of organic molecules can result in a marked reduction in fragility. Individual bay-substituted perylene derivatives display a high fragility of more than 70. Instead, slowly cooled perylene mixtures with more than three components undergo a liquid-liquid transition and turn into a strong glass former. Octonary perylene mixtures display a fragility of 13 ± 2, which not only is a record low value for organic molecules but also lies below values reported for the strongest known inorganic glass formers. Our work opens an avenue for the design of ultrastrong organic glass formers, which can be anticipated to find use in pharmaceutical science and organic electronics.

Crossover between the adiabatic and nonadiabatic electron transfer limits in the Landau-Zener model.

The semiclassical models of nonadiabatic transition were proposed first by Landau and Zener in 1932, and have been widely used in the study of electron transfer (ET); however, experimental demonstration of the Landau-Zener formula remains challenging to observe. Herein, employing the Hush-Marcus theory, thermal ET in mixed-valence complexes {[Mo2]-(ph)n-[Mo2]}+ (n = 1-3) has been investigated, spanning the nonadiabatic throughout the adiabatic limit, by analysis of the intervalence transition absorbances. Evidently, the Landau-Zener formula is valid in the adiabatic regime in a broader range of conditions than the theoretical limitation known as the narrow avoided-crossing. The intermediate system is identified with an overall transition probability (κel) of ∼0.5, which is contributed by the single and the first multiple passage. This study shows that in the intermediate regime, the ET kinetic results derived from the adiabatic and nonadiabatic formalisms are nearly identical, in accordance with the Landau-Zener model. The obtained insights help to understand and control the ET processes in biological and chemical systems.

Enhanced charge transport via d(δ)-p(π) conjugation in Mo2-integrated single-molecule junctions.

A trans-dimolybdenum nicotinate (m-Mo2) complex and its isonicotinate isomer (p-Mo2) were synthesized and characterized crystallographically, and their single-molecule charge transport properties were investigated using the STM break junction (STM-BJ) technique. With a quadruply bonded Mo2 complex unit integrated into molecular backbones, the single-molecule conductance for complex molecules was increased by more than one order of magnitude compared with that of the organic π-conjugated analogues 1,4-bis(4-pyridyl)benzene (p-Ph) and 1,4-bis(3-pyridyl)benzene (m-Ph). More interestingly, unlike m-Ph, m-Mo2 with meta connected pyridyl anchors presents larger conductance than that of p-Mo2 with two para connected pyridyl groups. DFT-based transmission calculations revealed that the significant conductance enhancement of Mo2 molecules originates from the largely reduced HOMO-LUMO gap, and the unique d(δ)-p(π) conjugation between the Mo2 unit and the pyridine rings gives rise to a delocalized electronic structure that endows the Mo2 molecules with an unexpected high conductance.

Mediation of Electron Transfer by Quadrupolar Interactions: The Constitutional, Electronic, and Energetic Complementarities in Supramolecular Chemistry.

Studies of intermolecular interactions enhance our knowledge of chemistry across molecular and supramolecular levels. Here, we show that host-guest quadrupolar interaction has a profound influence on the molecular system. With covalently bonded dimolybdenum complex units as the electron donor (D) and acceptor (A) and a thienylene group (C4H2S) as the bridge (B), the mixed-valence D-B-A complexes are shaped with clefts in the middle of the molecule. Interestingly, in aromatic solvents, the D-A electronic coupling constants (Hab) and electron transfer rates (ket) are dramatically reduced. Theoretical computations indicate that an aromatic molecule is encapsulated in the cleft of the D-B-A array; quadrupole-quadrupole interaction between the guest molecule and the C4H2S bridge evokes a charge redistribution, which increases the HOMO-LUMO energy gap, intervening in the through-bond electron transfer. These results demonstrate that a supramolecular system is unified underlying the characteristics of the assembled molecules through constitutional, electronic, and energetic complementarities.

Efficient electron transfer across hydrogen bond interfaces by proton-coupled and -uncoupled pathways.

Thermal electron transfer through hydrogen bonds remains largely unexplored. Here we report the study of electron transfer through amide-amide hydrogen bonded interfaces in mixed-valence complexes with covalently bonded Mo2 units as the electron donor and acceptor. The rate constants for electron transfer through the dual hydrogen bonds across a distance of 12.5 Å are on the order of ∼ 1010 s-1, as determined by optical analysis based on Marcus-Hush theory and simulation of ν(NH) vibrational band broadening, with the electron transfer efficiencies comparable to that of π conjugated bridges. This work demonstrates that electron transfer across a hydrogen bond may proceed via the known proton-coupled pathway, as well as an overlooked proton-uncoupled pathway that does not involve proton transfer. A mechanistic switch between the two pathways can be achieved by manipulation of the strengths of electronic coupling and hydrogen bonding. The knowledge of the non-proton coupled pathway has shed light on charge and energy transport in biological systems.