Revisiting the TCNQF4 0/1-/2- Catalysis Mechanism for the [Fe(CN)6 ]3-/4- -S2 O3 2- /S4 O6 2- Redox Reaction.

Published data suggest that sparingly soluble metal complexes of TCNQF n 1 - ${{\rm{TCNQF}}_{\rm{n}}^{{\rm{1 - }}} }$ , where n=0, 1, 2, 4, can act as heterogeneous catalysts for the kinetically very slow [ Fe ( CN ) 6 ]​ 3 - / 4 - ${{\rm{[Fe(CN)}}_{\rm{6}} {\rm{]}}^{{\rm{3 - /4 - }}} }$ - S 2 O 3 2 - ${{\rm{S}}_{\rm{2}} {\rm{O}}_{\rm{3}}^{{\rm{2 - }}} }$ / S 4 O 6 2 - ${{\rm{S}}_{\rm{4}} {\rm{O}}_{\rm{6}}^{{\rm{2 - }}} }$ reaction in aqueous solution. This study shows that the coordination polymer CuTCNQF 4 ${{\rm{CuTCNQF}}_{\rm{4}} }$ , participates as a homogeneous catalyst via an extremely small concentration of dissolved TCNQF 4 1 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{1 - }}} }$ . This finding suggests that the generally accepted mechanism of catalysis by TCNQF 4 ${{\rm{TCNQF}}_{\rm{4}} }$ based solids needs to be revisited to ascertain the role of homogeneous pathways. In the present study, UV-visible spectrophotometry was used to examine the catalysis of the aqueous redox reaction of [ Fe ( CN ) 6 ]​ 3 - ${{\rm{[Fe(CN)}}_{\rm{6}} {\rm{]}}^{{\rm{3 - }}} }$ (1.0 mM) with S 2 O 3 2 - ${{\rm{S}}_{\rm{2}} {\rm{O}}_{\rm{3}}^{{\rm{2 - }}} }$ (100 mM) in the presence of (i) a precursor catalyst, TCNQF 4 0 ${{\rm{TCNQF}}_{\rm{4}}^{\rm{0}} }$ ; (ii) the catalyst, TCNQF 4 1 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{1 - }}} }$ , as the water soluble Li+ salt; and (iii) CuTCNQF 4 ${{\rm{CuTCNQF}}_{\rm{4}} }$ . A homogeneous reaction scheme that utilises the TCNQF 4 1 - / 2 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{1 - /2 - }}} }$ couple is provided. In the case of TCNQF 4 1 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{1 - }}} }$ derived from highly soluble LiTCNQF 4 ${{\rm{LiTCNQF}}_{\rm{4}} }$ , quantitative conversion of 1.0 mM S 2 O 3 2 - ${{\rm{S}}_{\rm{2}} {\rm{O}}_{\rm{3}}^{{\rm{2 - }}} }$ to 0.50 mM S 4 O 6 2 - ${{\rm{S}}_{\rm{4}} {\rm{O}}_{\rm{6}}^{{\rm{2 - }}} }$ occurs with complete reduction of [ Fe ( CN ) 6 ]​ 3 - ${{\rm{[Fe(CN)}}_{\rm{6}} {\rm{]}}^{{\rm{3 - }}} }$ to [ Fe ( CN ) 6 ]​ 4 - ${{\rm{[Fe(CN)}}_{\rm{6}} {\rm{]}}^{{\rm{4 - }}} }$ being rapidly accelerated by sub-micomolar concentrations of TCNQF 4 1 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{1 - }}} }$ . TCNQF 4 2 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{2 - }}} }$ generated in the catalytic cycle, reacts with [ Fe ( CN ) 6 ]​ 3 - ${{\rm{[Fe(CN)}}_{\rm{6}} {\rm{]}}^{{\rm{3 - }}} }$ to reform TCNQF 4 1 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{1 - }}} }$ and produce [ Fe ( CN ) 6 ]​ 4 - ${{\rm{[Fe(CN)}}_{\rm{6}} {\rm{]}}^{{\rm{4 - }}} }$ . Along with the rapid catalytic reaction, the sluggish competing reaction between TCNQF 4 1 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{1 - }}} }$ and S 2 O 3 2 - ${{\rm{S}}_{\rm{2}} {\rm{O}}_{\rm{3}}^{{\rm{2 - }}} }$ occurs to give TCNQF 4 2 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{2 - }}} }$ , which is protonated to HTCNQF 4 1 - ${{\rm{\;HTCNQF}}_{\rm{4}}^{{\rm{1 - }}} }$ , along with a trace amount of S 4 O 6 2 - ${{\rm{S}}_{\rm{4}} {\rm{O}}_{\rm{6}}^{{\rm{2 - }}} }$ . On addition of the precursor catalyst, TCNQF 4 0 ${{\rm{TCNQF}}_{\rm{4}}^{\rm{0}} }$ , rapid reduction with S 2 O 3 2 - ${{\rm{S}}_{\rm{2}} {\rm{O}}_{\rm{3}}^{{\rm{2 - }}} }$ occurs to form TCNQF 4 1 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{1 - }}} }$ - the active catalyst. CuTCNQF 4 ${{\rm{CuTCNQF}}_{\rm{4}} }$ added to water is shown to be sufficiently soluble to provide adequate TCNQF 4 1 - ${{\rm{TCNQF}}_{\rm{4}}^{{\rm{1 - }}} }$ to act as the catalyst for the [ Fe ( CN ) 6 ]​ 3 - / 4 - ${{\rm{[Fe(CN)}}_{\rm{6}} {\rm{]}}^{{\rm{3 - /4 - }}} }$ - S 2 O 3 2 - ${{\rm{S}}_{\rm{2}} {\rm{O}}_{\rm{3}}^{{\rm{2 - }}} }$ / S 4 O 6 2 - ${{\rm{S}}_{\rm{4}} {\rm{O}}_{\rm{6}}^{{\rm{2 - }}} }$ reaction.

Fluorine Substitution of TCNQ Alters the Redox-Driven Catalytic Pathway for the Ferricyanide-Thiosulfate Reaction.

Mechanistic variation in catalysis through substituent-based redox tuning is well established. Fluorination of TCNQ (TCNQ=tetracyanoquinodimethane) provides ~850 mV variation in the redox potentials of the TCNQF n 0 / 1 - ${{{\rm {TCNQF}}}_{{\rm {n}}}^{{\rm {0/1-}}}}$ and TCNQF n 1 - / 2 - ${{{\rm {TCNQF}}}_{{\rm {n}}}^{{\rm {1-/2-}}}}$ (n=0, 2, 4) processes. With TCNQF 4 1 - ${{{\rm {TCNQF}}}_{{\rm {4}}}^{{\rm {1-}}}}$ , catalysis of the kinetically very slow ferrocyanide-thiosulfate redox reaction in aqueous solution occurs via a mechanism in which the catalyst TCNQF 4 1 - ${{{\rm {TCNQF}}}_{{\rm {4}}}^{{\rm {1-}}}}$ is reduced to TCNQF 4 2 - ${{{\rm {TCNQF}}}_{{\rm {4}}}^{{\rm {2-}}}}$ when reacting with S 2 O 3 2 - ${{{\rm {S}}}_{{\rm {2}}}{{\rm {O}}}_{{\rm {3}}}^{{\rm {2-}}}}$ which is oxidised to S 4 O 6 2 - ${{{\rm {S}}}_{{\rm {4}}}{{\rm {O}}}_{{\rm {6}}}^{{\rm {2-}}}}$ . Subsequently, TCNQF 4 2 - ${{{\rm {TCNQF}}}_{{\rm {4}}}^{{\rm {2-}}}}$ reacts with [ Fe ( CN ) 6 ]​ 3 - ${{{\rm {[Fe(CN)}}}_{{\rm {6}}}{{\rm {]}}}^{{\rm {3-}}}}$ to form [ Fe ( CN ) 6 ]​ 4 - ${{{\rm {[Fe(CN)}}}_{{\rm {6}}}{{\rm {]}}}^{{\rm {4-}}}}$ and reform the TCNQF 4 1 - ${{{\rm {TCNQF}}}_{{\rm {4}}}^{{\rm {1-}}}}$ catalyst, in another thermodynamically favoured process. An analogous mechanism applies with TCNQF 2 1 - ${{{\rm {TCNQF}}}_{{\rm {2}}}^{{\rm {1-}}}}$ as a catalyst. In contrast, since the reaction of S 2 O 3 2 - ${{{\rm {S}}}_{{\rm {2}}}{{\rm {O}}}_{{\rm {3}}}^{{\rm {2-}}}}$ with TCNQ 1 - ${{{\rm {TCNQ}}}^{{\rm {1-}}}}$ is thermodynamically unfavourable, an alternative mechanism is required to explain the catalytic activity observed in this non-fluorinated system. Here, upon addition of TCNQ 1 - ${{{\rm {TCNQ}}}^{{\rm {1-}}}}$ , reduction of [ Fe ( CN ) 6 ]​ 3 - ${{{\rm {[Fe(CN)}}}_{{\rm {6}}}{{\rm {]}}}^{{\rm {3-}}}}$ to [ Fe ( CN ) 6 ]​ 4 - ${{{\rm {[Fe(CN)}}}_{{\rm {6}}}{{\rm {]}}}^{{\rm {4-}}}}$ occurs with concomitant oxidation of TCNQ 1 - ${{{\rm {TCNQ}}}^{{\rm {1-}}}}$ to TCNQ 0 ${{{\rm {TCNQ}}}^{{\rm {0}}}}$ , which then acts as the catalyst for S 2 O 3 2 - ${{{\rm {S}}}_{{\rm {2}}}{{\rm {O}}}_{{\rm {3}}}^{{\rm {2-}}}}$ oxidation. Thermodynamic data explain the observed differences in the catalytic mechanisms. CuTCNQF n ${{{\rm {CuTCNQF}}}_{{\rm {n}}}}$ (n=0, 4) also act as catalysts for the ferricyanide-thiosulfate reaction in aqueous solution. The present study shows that homogeneous pathways are available following addition of these dissolved materials. Previously, these CuTCNQF n ${{{\rm {CuTCNQF}}}_{{\rm {n}}}}$ (n=0, 4) coordination polymers have been regarded as insoluble in water and proposed as heterogeneous catalysts for the ferricyanide-thiosulfate reaction. Details and mechanistic differences were established using UV-visible spectrophotometry and cyclic voltammetry.

Revisiting the TCNQF 4 0 / 1 - / 2 - ${{\bf TCNQF}_{\bf 4}

The front cover artwork was done by Michelle Farrelly, a member of the Martin group at Monash University. The image represents a perspective of a cuvette in which the catalysis of the thiosulfate-ferricyanide reaction was achieved by a TCNQF4 -based redox reaction in aqueous solution. The primary method used to monitor these reactions was spectrophotometry. Read the full text of the Research Article at 10.1002/cphc.202200942.

Helical intermediate formation and its role in amyloids of an amphibian antimicrobial peptide.

Helical intermediates appear to be crucial in the amyloid formation of several amyloidogenic peptides, including Aß, that are implicated in different neurodegenerative diseases. Intermediate species of amyloid formation have been reported to be more toxic than mature amyloid fibrils. Hence, the current work focuses on understanding the mechanistic roles of the helical intermediates in the early stages of amyloid self-assembly in amyloidogenic peptides. Molecular dynamics (MD) simulations and the adaptive biasing force (ABF) method were utilized to investigate structural changes that lead to amyloid formation in amphibian peptide uperin-3.5 (U3.5), an antimicrobial and amyloidogenic peptide. Microsecond time-scale MD simulations revealed that peptide aggregation, into ß-sheet dominated aggregates, is centred on two important factors; evolution of α-helical intermediates and the critical role of local peptide concentration inside these aggregates. Electrostatic attraction between the oppositely charged aspartate (D) and arginine (R) residues located near the N-terminus induced hydrogen bonding resulting in the formation of precursor 310-helices close to the N-terminus. The 310-helices transitioned into α-helices, thereby imparting partial helical conformations to the peptides. In the initial stages of aggregation, U3.5 peptides with amphipathic, partial helices were driven closer by hydrophobic interactions to form small clusters of helical intermediates. These helices imparted stability to the helical intermediates, which promoted the growth of clusters by further addition of peptides. This led to an increase in the local peptide concentration, which enabled stronger peptide-peptide interactions and triggered a ß-sheet transition in these aggregates. Thus, this study emphasized that the helical intermediates may be crucial to the evolution of ß-sheet-rich amyloid structures.

Specific Cationic Antimicrobial Peptides Enhance the Recovery of Low-Load Quiescent Mycobacterium tuberculosis in Routine Diagnostics.

The culture confirmation of Mycobacterium tuberculosis (MTB) remains the gold standard for the diagnosis of Tuberculosis (TB) with culture conversion representing proof of cure. However, over 40% of TB samples fail to isolate MTB even though many patients remain infectious due to the presence of viable non-culturable forms. Previously, we have shown that two short cationic peptides, T14D and TB08L, induce a hormetic response at low concentrations, leading to a stimulation of growth in MTB and the related animal pathogen Mycobacterium bovis (bTB). Here, we examine these peptides showing they can influence the mycobacterial membrane integrity and function through membrane potential reduction. We also show this disruption is associated with an abnormal reduction in transcriptomic signalling from specific mycobacterial membrane sensors that normally monitor the immediate cellular environment and maintain the non-growing phenotype. We observe that exposing MTB or bTB to these peptides at optimal concentrations rapidly represses signalling mechanisms maintaining dormancy phenotypes, which leads to the promotion of aerobic metabolism and conversion into a replicative phenotype. We further show a practical application of these peptides as reagents able to enhance conventional routine culture methods by stimulating mycobacterial growth. We evaluated the ability of a peptide-supplemented sample preparation and culture protocol to isolate the MTB against a gold standard routine method tested in parallel on 255 samples from 155 patients with suspected TB. The peptide enhancement increased the sample positivity rate by 46% and decreased the average time to sample positivity of respiratory/faecal sampling by seven days. The most significant improvements in isolation rates were from sputum smear-negative low-load samples and faeces. The peptide enhancement increased sampling test sensitivity by 19%, recovery in samples from patients with a previously culture-confirmed TB by 20%, and those empirically treated for TB by 21%. We conclude that sample decontamination and culture enhancement with D-enantiomer peptides offer good potential for the much-needed improvement of the culture confirmation of TB.

Polymer Nanodiscs and Their Bioanalytical Potential.

Membrane proteins (MPs) play a pivotal role in cellular function and are therefore predominant pharmaceutical targets. Although detailed understanding of MP structure and mechanistic activity is invaluable for rational drug design, challenges are associated with the purification and study of MPs. This review delves into the historical developments that became the prelude to currently available membrane mimetic technologies before shining a spotlight on polymer nanodiscs. These are soluble nanosized particles capable of encompassing MPs embedded in a phospholipid ring. The expanding range of reported amphipathic polymer nanodisc materials is presented and discussed in terms of their tolerance to different solution conditions and their nanodisc properties. Finally, the analytical scope of polymer nanodiscs is considered in both the demonstration of basic nanodisc parameters as well as in the elucidation of structures, lipid-protein interactions, and the functional mechanisms of reconstituted membrane proteins. The final emphasis is given to the unique benefits and applications demonstrated for native nanodiscs accessed through a detergent free process.

Sequence comparisons of cytochrome P450 aromatases from Australian animals predict differences in enzymatic activity and/or efficiency†.

Aromatase (P450arom, CYP19A1) is the terminal enzyme in the synthesis of the steroid hormone family of estrogens. Not surprisingly, this enzyme has structural similarities between the limited number of species studied thus far. This study examined the structure of aromatases from four diverse Australian species including a marsupial (tammar wallaby; Macropus eugenii), monotreme (platypus; Ornithorhynchus anatinus), ratite (emu; Dromaius novaehollandiae) and lizard (bearded dragon; Pogona vitticeps). We successfully built homology models for each species, using the only crystallographically determined structure available, human aromatase. The amino acid sequences showed high amino acid sequence identity to the human aromatase: wallaby 81%, platypus 73%, emu 75% and bearded dragon at 74%. The overall structure was highly conserved among the five species, although there were non-secondary structures (loops and bends) that were variable and flexible that may result in some differences in catalytic activity. At the N-terminal regions, there were deletions and variations that suggest that functional distinctions may be found. We found that the active sites of all these proteins were identical, except for a slight variation in the emu. The electrostatic potential across the surfaces of these aromatases highlighted likely variations to the protein-protein interactions of these enzymes with both redox partner cytochrome P450 reductase and possibly homodimerization in the case of the platypus, which has been postulated for the human aromatase enzyme. Given the high natural selection pressures on reproductive strategies, the relatively high degree of conservation of aromatase sequence and structure across species suggests that there is biochemically very little scope for changes to have evolved without the loss of enzyme activity.

The Kinetics of Amyloid Fibrillar Aggregation of Uperin 3.5 Is Directed by the Peptide's Secondary Structure.

Many peptides aggregate into insoluble ß-sheet rich amyloid fibrils. Some of these aggregation processes are linked to age-related diseases, such as Alzheimer's disease and type 2 diabetes. Here, we show that the secondary structure of the peptide uperin 3.5 directs the kinetics and mechanism of amyloid fibrillar aggregation. Uperin 3.5 variants were investigated using thioflavin T fluorescence assays, circular dichroism spectroscopy, and structure prediction methods. Our results suggest that those peptide variants with a strong propensity to form an α-helical secondary structure under physiological conditions are more likely to aggregate into amyloid fibrils than peptides in an unstructured or "random coil" conformation. This conclusion is in good agreement with the hypothesis that an α-helical transition state is required for peptide aggregation into amyloid fibrils. Specifically, uperin 3.5 variants in which charged amino acids were replaced by alanine were richer in α-helical content, leading to enhanced aggregation compared to that of wild type uperin 3.5. However, the addition of 2,2,2-trifluoroethanol as a major co-solute or membrane-mimicking phospholipid environments locked uperin 3.5 to the α-helical conformation preventing amyloid aggregation. Strategies for stabilizing peptides into their α-helical conformation could provide therapeutic approaches for overcoming peptide aggregation-related diseases. The impact of the physiological environment on peptide secondary structure could explain aggregation processes in a cellular environment.

Adsorption of Amyloidogenic Peptides to Functionalized Surfaces Is Biased by Charge and Hydrophilicity.

Surfaces are abundant in living systems, such as in the form of cellular membranes, and govern many biological processes. In this study, the adsorption of the amyloidogenic model peptides GNNQQNY, NNFGAIL, and VQIVYK as well as the amyloid-forming antimicrobial peptide uperin 3.5 (U3.5) were studied at low concentrations (100 µM) to different surfaces. The technique of a quartz crystal microbalance with dissipation monitoring (QCM-D) was applied as it enables the monitoring of mass binding to sensors at nanogram sensitivity. Gold-coated quartz sensors were used as unmodified gold surfaces or functionalized with self-assembled monolayers (SAMs) of alkanethiols (terminated as methyl, amino, carboxyl, and hydroxyl) resulting in different adsorption affinities of the peptides. Our objective was to evaluate the underlying role of the nature and feature of interfaces in biological systems which could concentrate peptides and impact or trigger peptide aggregation processes. In overall, the largely hydrophobic peptides adsorbed with preference to hydrophobic or countercharged surfaces. Further, the glycoprotein lubricin (LUB) was tested as an antiadhesive coating. Despite its hydrophilicity, the adsorption of peptides to LUB coated sensors was similar to the adsorption to unmodified gold surfaces, which indicates that some peptides diffused through the LUB layer to reach the underlying gold sensor surface. The LUB protein-antiadhesive is thus more effective as a biomaterial coating against larger biomolecules than small peptides under the conditions used here. This study provides directions toward a better understanding of amyloid peptide adsorption to biologically relevant interfaces, such as cellular membranes.

Critical effects of polar fluorescent probes on the interaction of DHA with POPC supported lipid bilayers.

The understanding of lipid bilayer structure and function has been advanced by the application of molecular fluorophores. However, the effects of these probe molecules on the physicochemical properties of membranes being studied are poorly understood. A quartz crystal microbalance with dissipation monitoring instrument was used in this work to investigate the impact of two commonly used fluorescent probes, 1­palmitoyl­2­{12­[(7­nitro­2­1,3­benzoxadiazol­4­yl)amino]dodecanoyl}­sn­glycero­3­phosphocholine (NBD-PC) and 1,2­dipalmitoyl­sn­glycero­3­phosphoethanolamine­n­(lissamine rhodamine­B­sulfonyl) (Lis-Rhod PE), on the formation and physicochemical properties of a 1­palmitoyl­2­oleoyl­sn­glycero­3­phosphocholine supported lipid bilayer (POPC-SLB). The interaction of the POPC-SLB and fluorophore-modified POPC-SLB with docosahexaenoic acid, DHA, was evaluated. The incorporation of DHA into the POPC-SLB was observed to significantly decrease in the presence of the Lis-Rhod PE probe compared with the POPC-SLB. In addition, it was observed that the small concentration of DHA incorporated into the POPC:NBD-PC SLB can produce rearrangement processes followed by the lost not only of DHA but also of POPC or NBD-PC molecules or both during the washing step. This work has significant implications for the interpretation of data employing fluorescent reporter molecules within SLBs.

How kanamycin A interacts with bacterial and mammalian mimetic membranes.

Biological membranes are natural barriers to the transport of molecules and drugs within human bodies. Many antibacterial agents need to cross these membranes to reach their target and elicit specific effects. Kanamycin A belongs to the family of aminoglycoside antibiotics that target cellular RNA to inhibit bacterial and viral replication. Previous studies have shown that aminoglycosides bind to mammalian but disrupt bacterial membranes. In this study, molecular dynamics (MD) simulations and infrared (IR) spectroscopy were applied to investigate the initial, first key interactions of kanamycin A, as a representative aminoglycoside, with both bacterial and mammalian lipid bilayers at the molecular level. Computational studies revealed strong hydrogen bonding interactions between the hydroxyl and amino groups of the aminoglycoside with the ester carbonyl and phosphate groups of the lipids. IR spectroscopy provided experimental verification of the important role of the lipid's ester carbonyl, phosphate and hydroxyl groups for aminoglycoside binding. The bacterial membrane became disordered upon aminoglycoside addition, whereas the mammalian membrane became stiffer and more ordered. This indicates the bacterial membrane disruption observed by previous studies.

Biogenic Manganese-Oxide Mineralization is Enhanced by an Oxidative Priming Mechanism for the Multi-Copper Oxidase, MnxEFG.

In a natural geochemical cycle, manganese-oxide minerals (MnOx ) are principally formed through a microbial process, where a putative multicopper oxidase MnxG plays an essential role. Recent success in isolating the approximately 230 kDa, enzymatically active MnxEFG protein complex, has advanced our understanding of biogenic MnOx mineralization. Here, the kinetics of MnOx formation catalyzed by MnxEFG are examined using a quartz crystal microbalance (QCM), and the first electrochemical characterization of the MnxEFG complex is reported using Fourier transformed alternating current voltammetry. The voltammetric studies undertaken using near-neutral solutions (pH 7.8) establish the apparent reversible potentials for the Type 2 Cu sites in MnxEFG immobilized on a carboxy-terminated monolayer to be in the range 0.36-0.40 V versus a normal hydrogen electrode. Oxidative priming of the MnxEFG protein complex substantially enhances the enzymatic activity, as found by in situ electrochemical QCM analysis. The biogeochemical significance of this enzyme is clear, although the role of an oxidative priming of catalytic activity might be either an evolutionary advantage or an ancient relic of primordial existence.

Tunable Biogenic Manganese Oxides.

Influence of the conditions for aerobic oxidation of Mn2+(aq) catalysed by the MnxEFG protein complex on the morphology, structure and reactivity of the resulting biogenic manganese oxides (MnOx ) is explored. Physical characterisation of MnOx includes scanning and transmission electron microscopy, and X-ray photoelectron and K-edge Mn, Fe X-ray absorption spectroscopy. This characterisation reveals that the MnOx materials share the structural features of birnessite, yet differ in the degree of structural disorder. Importantly, these biogenic products exhibit strikingly different morphologies that can be easily controlled. Changing the substrate-to-protein ratio produces MnOx either as nm-thin sheets, or rods with diameters below 20 nm, or a combination of the two. Mineralisation in solutions that contain Fe2+(aq) makes solids with significant disorder in the structure, while the presence of Ca2+(aq) facilitates formation of more ordered materials. The (photo)oxidation and (photo)electrocatalytic capacity of the MnOx minerals is examined and correlated with their structural properties.

Analysis of Perforin Assembly by Quartz Crystal Microbalance Reveals a Role for Cholesterol and Calcium-independent Membrane Binding.

Perforin is an essential component in the cytotoxic lymphocyte-mediated cell death pathway. The traditional view holds that perforin monomers assemble into pores in the target cell membrane via a calcium-dependent process and facilitate translocation of cytotoxic proteases into the cytoplasm to induce apoptosis. Although many studies have examined the structure and role of perforin, the mechanics of pore assembly and granzyme delivery remain unclear. Here we have employed quartz crystal microbalance with dissipation monitoring (QCM-D) to investigate binding and assembly of perforin on lipid membranes, and show that perforin monomers bind to the membrane in a cooperative manner. We also found that cholesterol influences perforin binding and activity on intact cells and model membranes. Finally, contrary to current thinking, perforin efficiently binds membranes in the absence of calcium. When calcium is added to perforin already on the membrane, the QCM-D response changes significantly, indicating that perforin becomes membranolytic only after calcium binding.

Real-time examination of aminoglycoside activity towards bacterial mimetic membranes using Quartz Crystal Microbalance with Dissipation monitoring (QCM-D).

The rapid increase in multi-drug resistant bacteria has resulted in previously discontinued treatments being revisited. Aminoglycosides are effective "old" antibacterial agents that fall within this category. Despite extensive usage and understanding of their intracellular targets, there is limited mechanistic knowledge regarding how aminoglycosides penetrate bacterial membranes. Thus, the activity of two well-known aminoglycosides, kanamycin A and neomycin B, towards a bacterial mimetic membrane (DMPC:DMPG (4:1)) was examined using a Quartz Crystal Microbalance with Dissipation monitoring (QCM-D). The macroscopic effect of increasing the aminoglycoside concentration showed that kanamycin A exerts a threshold response, switching from binding to the membrane to disruption of the surface. Neomycin B, however, disrupted the membrane at all concentrations examined. At concentrations above the threshold value observed for kanamycin A, both aminoglycosides revealed similar mechanistic details. That is, they both inserted into the bacterial mimetic lipid bilayer, prior to disruption via loss of materials, presumably aminoglycoside-membrane composites. Depth profile analysis of this membrane interaction was achieved using the overtones of the quartz crystal sensor. The measured data is consistent with a two-stage process in which insertion of the aminoglycoside precedes the 'detergent-like' removal of membranes from the sensor. The results of this study contribute to the insight required for aminoglycosides to be reconsidered as active antimicrobial agents/co-agents by providing details of activity at the bacterial membrane. Kanamycin and neomycin still offer potential as antimicrobial therapeutics for the future and the QCM-D method illustrates great promise for screening new antibacterial or antiviral drug candidates.

Assembly of streptolysin O pores assessed by quartz crystal microbalance and atomic force microscopy provides evidence for the formation of anchored but incomplete oligomers.

Streptolysin O (SLO) is a bacterial pore forming protein that is part of the cholesterol dependent cytolysin (CDC) family. We have used quartz crystal microbalance with dissipation monitoring (QCM-D) to examine SLO membrane binding and pore formation. In this system, SLO binds tightly to cholesterol-containing membranes, and assembles into partial and complete pores confirmed by atomic force microscopy. SLO binds to the lipid bilayer at a single rate consistent with the Langmuir isotherm model of adsorption. Changes in dissipation illustrate that SLO alters the viscoelastic properties of the bilayer during pore formation, but there is no loss of material from the bilayer as reported for small membrane-penetrating peptides. SLO mutants were used to further dissect the assembly and insertion processes by QCM-D. This shows the signature of SLO in QCM-D changes when pore formation is inhibited, and that bound and inserted SLO forms can be distinguished. Furthermore a pre-pore locked SLO mutant binds reversibly to lipid, suggesting that the partially complete wtSLO forms observed by AFM are anchored to the membrane.

The Amyloid Fibril-Forming Properties of the Amphibian Antimicrobial Peptide Uperin†3.5.

The amphibian skin is a vast resource for bioactive peptides, which form the basis of the animals' innate immune system. Key components of the secretions of the cutaneous glands are antimicrobial peptides (AMPs), which exert their cytotoxic effects often as a result of membrane disruption. It is becoming increasingly evident that there is a link between the mechanism of action of AMPs and amyloidogenic peptides and proteins. In this work, we demonstrate that the broad-spectrum amphibian AMP uperin 3.5, which has a random-coil structure in solution but adopts an α-helical structure in membrane-like environments, forms amyloid fibrils rapidly in solution at neutral pH. These fibrils are cytotoxic to model neuronal cells in a similar fashion to those formed by the proteins implicated in neurodegenerative diseases. The addition of small quantities of 2,2,2-trifluoroethanol accelerates fibril formation by uperin 3.5, and is correlated with a structural stabilisation induced by this co-solvent. Uperin 3.5 fibril formation and the associated cellular toxicity are inhibited by the polyphenol (-)-epigallocatechin-3-gallate (EGCG). Furthermore, EGCG rapidly dissociates fully formed uperin 3.5 fibrils. Ion mobility-mass spectrometry reveals that uperin 3.5 adopts various oligomeric states in solution. Combined, these observations imply that the mechanism of membrane permeability by uperin 3.5 is related to its fibril-forming properties.

Optimization of oncocin for antibacterial activity using a SPOT synthesis approach: extending the pathogen spectrum to Staphylococcus aureus.

The identification of lead molecules against multidrug-resistant bacteria ensuing the development of novel antimicrobial drugs is an urgent task. Proline-rich antimicrobial peptides are highly active in vitro and in vivo, but only against a few Gram-negative human pathogens, with rather weak activities against Pseudomonas aeruginosa and Staphylococcus aureus. This reduced level of efficacy could be related to inadequate uptake mechanisms or structural differences of the intracellular target proteins, i.e., the 70S ribosome or chaperone DnaK. Here we synthesized peptide arrays on cellulose membranes using cleavable linkers to release the free individual peptides for further antimicrobial tests. Thus, a library of singly substituted oncocin analogs was produced by replacing each residue by all other 19 canonical amino acids yielding a set of 361 individual peptides to be evaluated against a luminescent P. aeruginosa strain. Thirteen substitutions appeared promising and their improved antibacterial activities were confirmed for different bacteria after larger scale synthesis of these analogs. By combining two favorable substitutions into one peptide, we finally obtained an oncocin analog that was ten times more active against P. aeruginosa and even 100-fold more active against S. aureus than the original oncocin, providing minimal inhibitory concentrations of 4-8 and 0.5 µg/mL, respectively.

Real-Time Quartz Crystal Microbalance Monitoring of Free Docosahexaenoic Acid Interactions with Supported Lipid Bilayers.

Docosahexaenoic acid (DHA) is the most abundant polyunsaturated omega-3 fatty acid found in mammalian neuronal cell membranes. Although DHA is known to be important for neuronal cell survival, little is know about how DHA interacts with phospholipid bilayers. This study presents a detailed quartz crystal microbalance with dissipation monitoring (QCM-D) analysis of free DHA interactions with individual and mixed phospholipid supported lipid bilayers (SLB). DHA incorporation and subsequent changes to the SLBs viscoelastic properties were observed to be concentration-dependent, influenced by the phospholipid species, the headgroup charge, and the presence or absence of calcium ions. It was observed that 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) SLBs incorporated the greatest amount of DHA concentration, whereas the presence of phospholipids, phosphatidylserine (PS), and phosphatidylinositol (PI) in a POPC SLB significantly reduced DHA incorporation and changed the SLBs physicochemical properties. These observations are hypothesized to be due to a substitution event occurring between DHA and phospholipid species. PS domain formation in POPC/PS 8:2 SLBs was observed in the presence of calcium ions, which favored DHA incorporation to a similar level as for a POPC only SLB. The changes in SLB thickness observed with different DHA concentrations are also presented. This work contributes to an understanding of the physical changes induced in a lipid bilayer as a consequence of its exposure to different DHA concentrations (from 50 to 200 µM). The capacity of DHA to influence the physical properties of SLBs indicates the potential for dietary DHA supplementation to cause changes in cellular membranes in vivo, with subsequent physiological consequences for cell function.

Role of water in the dynamic disproportionation of Zn-based TCNQ(F4) coordination polymers (TCNQ = tetracyanoquinodimethane).

Intriguingly, coordination polymers containing TCNQ(2­) and TCNQF4(2­) (TCNQ = 7,7,8,8-tetracyanoquinodimethane, TCNQF4 = 2,3,5,6-tetrafluoro-7,7,8,8-tetracyanoquinodimethane, both designated as TCNQ(F4)(2­)) may be generated from reaction of metal ions with TCNQ(F4)•­. An explanation is now provided in terms of a solvent-dependent dynamic disproportionation reaction. A systematic study of reactions associated with TCNQ(F4) and electrochemically generated TCNQ(F4)MeCN•­ and TCNQ(F4)MeCN(2­) revealed that disproportionation of TCNQ(F4)MeCN•­ radical anions in acetonitrile containing a low concentration of water is facilitated by the presence of ZnMeCN(2+). Thus, while the disproportionation reaction 2TCNQ(F4)MeCN•­ TCNQ(F4)MeCN + TCNQ(F4)MeCN(2­) is thermodynamically very unfavorable in this medium (Keq ≈ 9 × 10(­10); TCNQF4), the preferential precipitation of ZnTCNQ(F4)(s) drives the reaction: ZnMeCN(2+) + 2 TCNQ(F4)MeCN•­ ZnTCNQ(F4)(s) + TCNQ(F4)MeCN. The concomitant formation of soluble TCNQ(F4)MeCN and insoluble ZnTCNQ(F4)(s) and the loss of TCNQ(F4)MeCN•­ were verified by UV­visible and infrared spectroscopy and steady-state voltammetry. Importantly, the reverse reaction of comproportionation rather than disproportionation becomes the favored process in the presence of ≥3% (v/v) water, due to the increased solubility of solid ZnTCNQ(F4)(s). Thus, in this "wet" environment, ZnMeCN(2+) and TCNQ(F4)MeCN•­ are produced from a mixture of ZnTCNQ(F4)(s) and TCNQ(F4)MeCN and with the addition of water provides a medium for synthesis of [Zn(TCNQ(F4))2(H2O)2]. An important conclusion from this work is that the redox level of TCNQ(F4)-based materials, synthesized from a mixture of metal cations and TCNQ(F4)•­, is controlled by a solvent-dependent disproportionation/comproportionation reaction that may be tuned to favor formation of solids containing the monoanion radical, the dianion, or even a mixture of both.