Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

CYCLeR-a novel tool for the full isoform assembly and quantification of circRNAs.

Stefanov, Stefan R; Meyer, Irmtraud M.

Nucleic Acids Res ; 51(2): e10, 2023 01 25.

Artigo em Inglês | MEDLINE | ID: mdl-36478276

2.

e-RNA: a collection of web-servers for the prediction and visualisation of RNA secondary structure and their functional features.

Tsybulskyi, Volodymyr; Semenchenko, Egor; Meyer, Irmtraud M.

Nucleic Acids Res ; 51(W1): W160-W167, 2023 07 05.

Artigo em Inglês | MEDLINE | ID: mdl-37099369

3.

ShapeSorter: a fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence.

Tsybulskyi, Volodymyr; Meyer, Irmtraud M.

Nucleic Acids Res ; 50(15): e85, 2022 08 26.

Artigo em Inglês | MEDLINE | ID: mdl-35641016

4.

CoBold: a method for identifying different functional classes of transient RNA structure features that can impact RNA structure formation in vivo.

Martín, Adrián López; Mounir, Mohamed; Meyer, Irmtraud M.

Nucleic Acids Res ; 49(4): e19, 2021 02 26.

Artigo em Inglês | MEDLINE | ID: mdl-33095878

5.

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

McCorkindale, Alexandra L; Wahle, Philipp; Werner, Sascha; Jungreis, Irwin; Menzel, Peter; Shukla, Chinmay J; Abreu, Rúben Lopes Pereira; Irizarry, Rafael A; Meyer, Irmtraud M; Kellis, Manolis; Zinzen, Robert P.

Development ; 146(6)2019 03 28.

Artigo em Inglês | MEDLINE | ID: mdl-30923056

6.

R-chie: a web server and R package for visualizing cis and trans RNA-RNA, RNA-DNA and DNA-DNA interactions.

Tsybulskyi, Volodymyr; Mounir, Mohamed; Meyer, Irmtraud M.

Nucleic Acids Res ; 48(18): e105, 2020 10 09.

Artigo em Inglês | MEDLINE | ID: mdl-32976561

7.

Transcriptional dynamics of microRNAs and their targets during Drosophila neurogenesis.

Menzel, Peter; McCorkindale, Alexandra L; Stefanov, Stefan R; Zinzen, Robert P; Meyer, Irmtraud M.

RNA Biol ; 16(1): 69-81, 2019 01.

Artigo em Inglês | MEDLINE | ID: mdl-30582411

8.

In silico methods for co-transcriptional RNA secondary structure prediction and for investigating alternative RNA structure expression.

Meyer, Irmtraud M.

Methods ; 120: 3-16, 2017 05 01.

Artigo em Inglês | MEDLINE | ID: mdl-28433606

9.

A comprehensive comparison of general RNA-RNA interaction prediction methods.

Lai, Daniel; Meyer, Irmtraud M.

Nucleic Acids Res ; 44(7): e61, 2016 Apr 20.

Artigo em Inglês | MEDLINE | ID: mdl-26673718

10.

Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.

Morin, Ryan D; Mendez-Lago, Maria; Mungall, Andrew J; Goya, Rodrigo; Mungall, Karen L; Corbett, Richard D; Johnson, Nathalie A; Severson, Tesa M; Chiu, Readman; Field, Matthew; Jackman, Shaun; Krzywinski, Martin; Scott, David W; Trinh, Diane L; Tamura-Wells, Jessica; Li, Sa; Firme, Marlo R; Rogic, Sanja; Griffith, Malachi; Chan, Susanna; Yakovenko, Oleksandr; Meyer, Irmtraud M; Zhao, Eric Y; Smailus, Duane; Moksa, Michelle; Chittaranjan, Suganthi; Rimsza, Lisa; Brooks-Wilson, Angela; Spinelli, John J; Ben-Neriah, Susana; Meissner, Barbara; Woolcock, Bruce; Boyle, Merrill; McDonald, Helen; Tam, Angela; Zhao, Yongjun; Delaney, Allen; Zeng, Thomas; Tse, Kane; Butterfield, Yaron; Birol, Inanç; Holt, Rob; Schein, Jacqueline; Horsman, Douglas E; Moore, Richard; Jones, Steven J M; Connors, Joseph M; Hirst, Martin; Gascoyne, Randy D; Marra, Marco A.

Nature ; 476(7360): 298-303, 2011 Jul 27.

Artigo em Inglês | MEDLINE | ID: mdl-21796119

11.

e-RNA: a collection of web servers for comparative RNA structure prediction and visualisation.

Lai, Daniel; Meyer, Irmtraud M.

Nucleic Acids Res ; 42(Web Server issue): W373-6, 2014 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-24810851

12.

On the importance of cotranscriptional RNA structure formation.

Lai, Daniel; Proctor, Jeff R; Meyer, Irmtraud M.

RNA ; 19(11): 1461-73, 2013 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-24131802

13.

Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing.

Mazloomian, Alborz; Meyer, Irmtraud M.

RNA Biol ; 12(12): 1391-401, 2015.

Artigo em Inglês | MEDLINE | ID: mdl-26512413

14.

Four RNA families with functional transient structures.

Zhu, Jing Yun A; Meyer, Irmtraud M.

RNA Biol ; 12(1): 5-20, 2015.

Artigo em Inglês | MEDLINE | ID: mdl-25751035

15.

COFOLD: an RNA secondary structure prediction method that takes co-transcriptional folding into account.

Proctor, Jeff R; Meyer, Irmtraud M.

Nucleic Acids Res ; 41(9): e102, 2013 May.

Artigo em Inglês | MEDLINE | ID: mdl-23511969

16.

Transient RNA structure features are evolutionarily conserved and can be computationally predicted.

Zhu, Jing Yun A; Steif, Adi; Proctor, Jeff R; Meyer, Irmtraud M.

Nucleic Acids Res ; 41(12): 6273-85, 2013 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-23625966

17.

R-CHIE: a web server and R package for visualizing RNA secondary structures.

Lai, Daniel; Proctor, Jeff R; Zhu, Jing Yun A; Meyer, Irmtraud M.

Nucleic Acids Res ; 40(12): e95, 2012 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-22434875

18.

The hok mRNA family.

Steif, Adi; Meyer, Irmtraud M.

RNA Biol ; 9(12): 1399-404, 2012 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-23324554

19.

Women in the European Virus Bioinformatics Center.

Hufsky, Franziska; Abecasis, Ana; Agudelo-Romero, Patricia; Bletsa, Magda; Brown, Katherine; Claus, Claudia; Deinhardt-Emmer, Stefanie; Deng, Li; Friedel, Caroline C; Gismondi, María Inés; Kostaki, Evangelia Georgia; Kühnert, Denise; Kulkarni-Kale, Urmila; Metzner, Karin J; Meyer, Irmtraud M; Miozzi, Laura; Nishimura, Luca; Paraskevopoulou, Sofia; Pérez-Cataluña, Alba; Rahlff, Janina; Thomson, Emma; Tumescheit, Charlotte; van der Hoek, Lia; Van Espen, Lore; Vandamme, Anne-Mieke; Zaheri, Maryam; Zuckerman, Neta; Marz, Manja.

Viruses ; 14(7)2022 07 12.

Artigo em Inglês | MEDLINE | ID: mdl-35891501

20.

TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures.

Wiebe, Nicholas J P; Meyer, Irmtraud M.

PLoS Comput Biol ; 6(6): e1000823, 2010 Jun 24.

Artigo em Inglês | MEDLINE | ID: mdl-20589081

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