Detalhe da pesquisa
1.
Boolean function metrics can assist modelers to check and choose logical rules.
J Theor Biol
; 538: 111025, 2022 04 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-35085537
2.
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts.
Nucleic Acids Res
; 48(D1): D642-D649, 2020 01 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-31586406
3.
Transcriptome-wide differences between Saccharomyces cerevisiae and Saccharomyces cerevisiae var. boulardii: Clues on host survival and probiotic activity based on promoter sequence variability.
Genomics
; 113(2): 530-539, 2021 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-33482324
4.
From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon.
BMC Bioinformatics
; 22(1): 399, 2021 Aug 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-34376148
5.
The N.C.Yeastract and CommunityYeastract databases to study gene and genomic transcription regulation in non-conventional yeasts.
FEMS Yeast Res
; 21(6)2021 09 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-34427650
6.
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae.
Nucleic Acids Res
; 46(D1): D348-D353, 2018 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-29036684
7.
On logical bifurcation diagrams.
J Theor Biol
; 466: 39-63, 2019 04 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-30658053
8.
Cooperative development of logical modelling standards and tools with CoLoMoTo.
Bioinformatics
; 31(7): 1154-9, 2015 Apr 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25619997
9.
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.
BMC Bioinformatics
; 13: 87, 2012 May 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-22568821
10.
Prediction of Gene and Genomic Regulation in Candida Species, Using the PathoYeastract Database: A Comparative Genomics Approach.
Methods Mol Biol
; 2477: 419-437, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-35524130
11.
Prediction and Boolean logical modelling of synergistic microRNA regulatory networks during reprogramming of male germline pluripotent stem cells.
Biosystems
; 207: 104453, 2021 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-34129895
12.
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae.
Nucleic Acids Res
; 36(Database issue): D132-6, 2008 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-18032429
13.
Revision of Boolean Models of Regulatory Networks Using Stable State Observations.
J Comput Biol
; 27(2): 144-155, 2020 Feb.
Artigo
em Inglês
| MEDLINE | ID: mdl-31794671
14.
A Boolean Logical model for Reprogramming of Testes-derived male Germline Stem Cells into Germline pluripotent stem cells.
Comput Methods Programs Biomed
; 192: 105473, 2020 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-32305736
15.
Assessing regulatory features of the current transcriptional network of Saccharomyces cerevisiae.
Sci Rep
; 10(1): 17744, 2020 10 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-33082399
16.
Hybrid Epithelial-Mesenchymal Phenotypes Are Controlled by Microenvironmental Factors.
Cancer Res
; 80(11): 2407-2420, 2020 06 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32217696
17.
A service-oriented architecture for integrating the modeling and formal verification of genetic regulatory networks.
BMC Bioinformatics
; 10: 450, 2009 Dec 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-20042075
18.
Temporal logic patterns for querying dynamic models of cellular interaction networks.
Bioinformatics
; 24(16): i227-33, 2008 Aug 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-18689830
19.
Repairing Boolean logical models from time-series data using Answer Set Programming.
Algorithms Mol Biol
; 14: 9, 2019.
Artigo
em Inglês
| MEDLINE | ID: mdl-30962813
20.
EpiLog: A software for the logical modelling of epithelial dynamics.
F1000Res
; 7: 1145, 2018.
Artigo
em Inglês
| MEDLINE | ID: mdl-30363398