Genomic-based epidemiology reveals independent origins and gene flow of glyphosate resistance in Bassia scoparia populations across North America.

Genomic-based epidemiology can provide insight into the origins and spread of herbicide resistance mechanisms in weeds. We used kochia (Bassia scoparia) populations resistant to the herbicide glyphosate from across western North America to test the alternative hypotheses that (i) a single EPSPS gene duplication event occurred initially in the Central Great Plains and then subsequently spread to all other geographical areas now exhibiting glyphosate-resistant kochia populations or that (ii) gene duplication occurred multiple times in independent events in a case of parallel evolution. We used qPCR markers previously developed for measuring the structure of the EPSPS tandem duplication to investigate whether all glyphosate-resistant individuals had the same EPSPS repeat structure. We also investigated population structure using simple sequence repeat markers to determine the relatedness of kochia populations from across the Central Great Plains, Northern Plains and the Pacific Northwest. We found that the original EPSPS duplication genotype was predominant in the Central Great Plains where glyphosate resistance was first reported. We identified two additional EPSPS duplication genotypes, one having geographical associations with the Northern Plains and the other with the Pacific Northwest. The EPSPS duplication genotype from the Pacific Northwest seems likely to represent a second, independent evolutionary origin of a resistance allele. We found evidence of gene flow across populations and a general lack of population structure. The results support at least two independent evolutionary origins of glyphosate resistance in kochia, followed by substantial and mostly geographically localized gene flow to spread the resistance alleles into diverse genetic backgrounds.

Effects of Strip Tillage in Sugar Beet on Density and Richness of Predatory Arthropods.

Strip tillage, in which tillage and seedbed preparation are limited to a narrow band where the subsequent crop is planted, provides many potential agronomic benefits, including reduced fuel and labor costs, reduced erosion, and improved soil tilth. Lower soil disturbance and enhanced water retention associated with strip tillage also may affect density and diversity of predatory arthropods, which have been little studied in sugar beet. We examined the effects of tillage (conventional versus strip) on the predatory epigeal arthropod fauna in sugar beet. Studies were conducted over three growing seasons (2010-2012) in Idaho using both fenced and unfenced pitfall traps to sample arthropods. Unfenced pitfall traps often captured a greater activity density and richness of predators, and showed no bias of higher captures in conventionally tilled plots as has been shown elsewhere. Total density of predators was higher in strip tillage only during 2011. Density and species richness of carabid beetles did not differ between tillage treatments during the course of the study. Density of the other major taxa (staphylinid beetles, spiders, and Opiliones) was higher under strip tillage during some years, especially early in the season, but richness showed little or no relationship with tillage. Predaceous arthropods might be favored by enhanced ground cover, higher humidity, more moderate temperatures, and/or less habitat disturbance associated with strip-tilled plots. The results suggest that certain groups of soil-dwelling predatory arthropods can be favored by strip tillage in sugar beet, which further adds to the benefits of conservation tillage in this system.

Impact of glyphosate-resistant sugar beet.

Glyphosate-resistant (GR) sugar beet became commercially available to US sugar beet growers in 2008 and was rapidly adopted. Prior to the availability of GR sugar beet, growers would commonly make 3-5 herbicide applications. This often resulted in some crop injury, but was accepted to reduce the impact of weeds. In addition, non-GR sugar beet was cultivated 1-3 times and often followed by hand weeding. The introduction of GR sugar beet drastically reduced the complexity of weed management. Concerns about GR weeds in the United States also apply to sugar beet growers. Changes in weed management strategies will be required to keep this technology. Sugar beet is arguably one of the most suitable crops for GR technology because: (1) none of the herbicides registered for use in this crop was very effective without risking crop injury; (2) sugar beet cannot be grown in the same field year after year owing to disease concerns and thus requires a 3-4 year rotation; (3) pollen-mediated gene flow is negligible from the sugar beet crop because it is a biennial and harvested before it flowers; (4) the processing of harvested roots to extract the sucrose rapidly degrades the DNA in the extracted raw juice and subsequent refining so that no DNA is present in the finished sugar; (5) studies have shown that processed GR beet sugar is identical to non-GR beet sugar, as well as cane sugar. © 2016 Society of Chemical Industry.