Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Electrogenetic signaling and information propagation for controlling microbial consortia via programmed lysis.

VanArsdale, Eric; Navid, Ali; Chu, Monica J; Halvorsen, Tiffany M; Payne, Gregory F; Jiao, Yongqin; Bentley, William E; Yung, Mimi C.

Biotechnol Bioeng ; 120(5): 1366-1381, 2023 05.

Artigo em Inglês | MEDLINE | ID: mdl-36710487

2.

Rank and Wormhole Attack Detection Model for RPL-Based Internet of Things Using Machine Learning.

Zahra, F; Jhanjhi, N Z; Brohi, Sarfraz Nawaz; Khan, Navid Ali; Masud, Mehedi; AlZain, Mohammed A.

Sensors (Basel) ; 22(18)2022 Sep 07.

Artigo em Inglês | MEDLINE | ID: mdl-36146111

3.

5G and IoT Based Reporting and Accident Detection (RAD) System to Deliver First Aid Box Using Unmanned Aerial Vehicle.

Alkinani, Monagi H; Almazroi, Abdulwahab Ali; Jhanjhi, N Z; Khan, Navid Ali.

Sensors (Basel) ; 21(20)2021 Oct 18.

Artigo em Inglês | MEDLINE | ID: mdl-34696118

4.

Collagen Turnover in Relation to Risk Factors and Hemodynamics in Human Intracranial Aneurysms.

Hackenberg, Katharina A M; Rajabzadeh-Oghaz, Hamidreza; Dreier, Rita; Buchholz, Bruce A; Navid, Ali; Rocke, David M; Abdulazim, Amr; Hänggi, Daniel; Siddiqui, Adnan; Macdonald, R Loch; Meng, Hui; Etminan, Nima.

Stroke ; 51(5): 1624-1628, 2020 05.

Artigo em Inglês | MEDLINE | ID: mdl-32192404

5.

System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris.

Navid, Ali; Jiao, Yongqin; Wong, Sergio Ernesto; Pett-Ridge, Jennifer.

BMC Bioinformatics ; 20(1): 233, 2019 May 09.

Artigo em Inglês | MEDLINE | ID: mdl-31072303

6.

Combining multiple functional annotation tools increases coverage of metabolic annotation.

Griesemer, Marc; Kimbrel, Jeffrey A; Zhou, Carol E; Navid, Ali; D'haeseleer, Patrik.

BMC Genomics ; 19(1): 948, 2018 Dec 19.

Artigo em Inglês | MEDLINE | ID: mdl-30567498

7.

D-Lactate production as a function of glucose metabolism in Saccharomyces cerevisiae.

Stewart, Benjamin J; Navid, Ali; Kulp, Kristen S; Knaack, Jennifer L S; Bench, Graham.

Yeast ; 30(2): 81-91, 2013 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-23361949

8.

Uses of Multi-Objective Flux Analysis for Optimization of Microbial Production of Secondary Metabolites.

Griesemer, Marc; Navid, Ali.

Microorganisms ; 11(9)2023 Aug 24.

Artigo em Inglês | MEDLINE | ID: mdl-37763993

9.

Multi-scale models of whole cells: progress and challenges.

Georgouli, Konstantia; Yeom, Jae-Seung; Blake, Robert C; Navid, Ali.

Front Cell Dev Biol ; 11: 1260507, 2023.

Artigo em Inglês | MEDLINE | ID: mdl-38020904

10.

A Beginner's Guide to the COBRA Toolbox.

Navid, Ali.

Methods Mol Biol ; 2349: 339-365, 2022.

Artigo em Inglês | MEDLINE | ID: mdl-34719002

11.

Curating COBRA Models of Microbial Metabolism.

Navid, Ali.

Methods Mol Biol ; 2349: 321-338, 2022.

Artigo em Inglês | MEDLINE | ID: mdl-34719001

12.

Bacterial exometabolites influence Chlamydomonas cell cycle and double algal productivity.

Windler, Miriam; Stuart, Rhona; Deutzmann, Joerg S; Mayali, Xavier; Navid, Ali; D'haeseleer, Patrik; Marcu, Oana E; Lipton, Mary; Nicora, Carrie; Spormann, Alfred M.

FEMS Microbiol Ecol ; 98(9)2022 08 25.

Artigo em Inglês | MEDLINE | ID: mdl-35977399

13.

Do genome-scale models need exact solvers or clearer standards?

Ebrahim, Ali; Almaas, Eivind; Bauer, Eugen; Bordbar, Aarash; Burgard, Anthony P; Chang, Roger L; Dräger, Andreas; Famili, Iman; Feist, Adam M; Fleming, Ronan Mt; Fong, Stephen S; Hatzimanikatis, Vassily; Herrgård, Markus J; Holder, Allen; Hucka, Michael; Hyduke, Daniel; Jamshidi, Neema; Lee, Sang Yup; Le Novère, Nicolas; Lerman, Joshua A; Lewis, Nathan E; Ma, Ding; Mahadevan, Radhakrishnan; Maranas, Costas; Nagarajan, Harish; Navid, Ali; Nielsen, Jens; Nielsen, Lars K; Nogales, Juan; Noronha, Alberto; Pal, Csaba; Palsson, Bernhard O; Papin, Jason A; Patil, Kiran R; Price, Nathan D; Reed, Jennifer L; Saunders, Michael; Senger, Ryan S; Sonnenschein, Nikolaus; Sun, Yuekai; Thiele, Ines.

Mol Syst Biol ; 11(10): 831, 2015 Oct 14.

Artigo em Inglês | MEDLINE | ID: mdl-26467284

14.

Finite element simulation and statistical investigation of an orthodontic mini-implant's stability in a novel screw design.

Pouyafar, Vahid; Meshkabadi, Ramin; Sadr Haghighi, Amir Hooman; Navid, Ali.

Proc Inst Mech Eng H ; 235(9): 1046-1057, 2021 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-34218700

15.

Yeast dynamic metabolic flux measurement in nutrient-rich media by HPLC and accelerator mass spectrometry.

Stewart, Benjamin J; Navid, Ali; Turteltaub, Kenneth W; Bench, Graham.

Anal Chem ; 82(23): 9812-7, 2010 Dec 01.

Artigo em Inglês | MEDLINE | ID: mdl-21062031

16.

Systems biology of microbial communities.

Navid, Ali; Ghim, Cheol-Min; Fenley, Andrew T; Yoon, Sooyeon; Lee, Sungmin; Almaas, Eivind.

Methods Mol Biol ; 500: 469-94, 2009.

Artigo em Inglês | MEDLINE | ID: mdl-19399434

17.

Investigation of the optimal design of orthodontic mini-implants based on the primary stability: A finite element analysis.

Sadr Haghighi, Amir Hooman; Pouyafar, Vahid; Navid, Ali; Eskandarinezhad, Mahsa; Abdollahzadeh Baghaei, Tannaz.

J Dent Res Dent Clin Dent Prospects ; 13(2): 85-89, 2019.

Artigo em Inglês | MEDLINE | ID: mdl-31592304

18.

Rapid countermeasure discovery against Francisella tularensis based on a metabolic network reconstruction.

Chaudhury, Sidhartha; Abdulhameed, Mohamed Diwan M; Singh, Narender; Tawa, Gregory J; D'haeseleer, Patrik M; Zemla, Adam T; Navid, Ali; Zhou, Carol E; Franklin, Matthew C; Cheung, Jonah; Rudolph, Michael J; Love, James; Graf, John F; Rozak, David A; Dankmeyer, Jennifer L; Amemiya, Kei; Daefler, Simon; Wallqvist, Anders.

PLoS One ; 8(5): e63369, 2013.

Artigo em Inglês | MEDLINE | ID: mdl-23704901

19.

Development of constraint-based system-level models of microbial metabolism.

Navid, Ali.

Methods Mol Biol ; 881: 531-49, 2012.

Artigo em Inglês | MEDLINE | ID: mdl-22639225

20.

Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach.

Navid, Ali; Almaas, Eivind.

BMC Syst Biol ; 6: 150, 2012 Dec 06.

Artigo em Inglês | MEDLINE | ID: mdl-23216785

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Electrogenetic signaling and information propagation for controlling microbial consortia via programmed lysis.

Rank and Wormhole Attack Detection Model for RPL-Based Internet of Things Using Machine Learning.

5G and IoT Based Reporting and Accident Detection (RAD) System to Deliver First Aid Box Using Unmanned Aerial Vehicle.

Collagen Turnover in Relation to Risk Factors and Hemodynamics in Human Intracranial Aneurysms.

System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris.

Combining multiple functional annotation tools increases coverage of metabolic annotation.

D-Lactate production as a function of glucose metabolism in Saccharomyces cerevisiae.

Uses of Multi-Objective Flux Analysis for Optimization of Microbial Production of Secondary Metabolites.

Multi-scale models of whole cells: progress and challenges.

A Beginner's Guide to the COBRA Toolbox.

Curating COBRA Models of Microbial Metabolism.

Bacterial exometabolites influence Chlamydomonas cell cycle and double algal productivity.

Do genome-scale models need exact solvers or clearer standards?

Finite element simulation and statistical investigation of an orthodontic mini-implant's stability in a novel screw design.

Yeast dynamic metabolic flux measurement in nutrient-rich media by HPLC and accelerator mass spectrometry.

Systems biology of microbial communities.

Investigation of the optimal design of orthodontic mini-implants based on the primary stability: A finite element analysis.

Rapid countermeasure discovery against Francisella tularensis based on a metabolic network reconstruction.

Development of constraint-based system-level models of microbial metabolism.

Genome-level transcription data of Yersinia pestis analyzed with a new metabolic constraint-based approach.