Detalhe da pesquisa
1.
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.
Brief Bioinform
; 23(4)2022 07 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35671510
2.
A practical guide to mechanistic systems modeling in biology using a logic-based approach.
Brief Bioinform
; 22(4)2021 07 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-33064138
3.
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling.
Brief Bioinform
; 22(4)2021 07 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-33378765
4.
Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Brief Bioinform
; 22(2): 1848-1859, 2021 03 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-32313939
5.
Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach.
PLoS Comput Biol
; 18(12): e1010408, 2022 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-36508473
6.
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.
Bioinformatics
; 37(21): 3702-3706, 2021 11 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34179955
7.
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
Mol Syst Biol
; 17(10): e10387, 2021 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-34664389
8.
Community-driven roadmap for integrated disease maps.
Brief Bioinform
; 20(2): 659-670, 2019 03 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-29688273
9.
Automated inference of Boolean models from molecular interaction maps using CaSQ.
Bioinformatics
; 36(16): 4473-4482, 2020 08 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-32403123
10.
Effects of proteasome inhibitors on cytokines, metalloproteinases and their inhibitors and collagen type-I expression in periprosthetic tissues and fibroblasts from loose arthroplasty endoprostheses.
Connect Tissue Res
; 60(6): 555-570, 2019 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-30931650
11.
COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
Mol Syst Biol
; 17(12): e10851, 2021 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-34939300
12.
Computational modeling of the main signaling pathways involved in mast cell activation.
Curr Top Microbiol Immunol
; 382: 69-93, 2014.
Artigo
em Inglês
| MEDLINE | ID: mdl-25116096
13.
Proteomic analysis of the SH2 domain-containing leukocyte protein of 76 kDa (SLP76) interactome in resting and activated primary mast cells [corrected].
Mol Cell Proteomics
; 12(10): 2874-89, 2013 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-23820730
14.
MetaLo: metabolic analysis of Logical models extracted from molecular interaction maps.
J Integr Bioinform
; 2024 Feb 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-38314776
15.
Large-scale computational modelling of the M1 and M2 synovial macrophages in rheumatoid arthritis.
NPJ Syst Biol Appl
; 10(1): 10, 2024 Jan 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-38272919
16.
A large-scale Boolean model of the rheumatoid arthritis fibroblast-like synoviocytes predicts drug synergies in the arthritic joint.
NPJ Syst Biol Appl
; 9(1): 33, 2023 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-37454172
17.
Hybrid computational modeling highlights reverse warburg effect in breast cancer-associated fibroblasts.
Comput Struct Biotechnol J
; 21: 4196-4206, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-37705596
18.
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance.
Front Bioinform
; 3: 1197310, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-37426048
19.
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.
Front Immunol
; 14: 1282859, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-38414974
20.
Boolean modelling as a logic-based dynamic approach in systems medicine.
Comput Struct Biotechnol J
; 20: 3161-3172, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-35782730