Towards molecular alloys: computational and experimental studies on (p-NCC6F4CNSeSeN)x(p-NCC6F4CNSSN)1-x.

The ß-phase of the radical p-NCC6F4CNSSN (1ß) crystallizes in the orthorhombic space group Fdd2 and orders as a canted antiferromagnet with TN = 36 K. Computational studies (B3LYP or M06-2X functional with the cc-pVTZ-PP(-F)+basis set) of the microscopic nearest-neighbour magnetic exchange coupling in 1ß and in the hypothetical isomorphous phase of the selenium radical p-NCC6F4CNSeSeN (2ß) revealed that replacement of S by Se should lead to a significant enhancement in the magnetic ordering temperature by ca. 20% (B3LYP) - 30% (M06-2X). Recrystallization of 2 from solution or via vacuum sublimation afforded only the known diamagnetic, dimeric phase, 2α. Computational studies indicated that both the molecular geometry and charge distribution for 1 and 2 are extremely similar and experimental approaches to form alloys of the general form 11-x2x were explored: attempts to cosublime 1 and 2in vacuo were unsuccessful, forming only 1ß due to the low volatility of 2. Crystallization of pure 1 by solution evaporation was found to afford polymorph 1α (triclinic, P1̄) selectively, irrespective of the solvent employed (CH2Cl2, MeCN, PhMe or THF) but 1α transformed to 1ß upon subsequent vacuum sublimation. Crystallization of 1 in the presence of 2 (up to 20 mol%) from solution evaporation was examined. At 20 mol% there was clear evidence for formation of both 1α and 2α as distinct crystallographic phases by powder X-ray diffraction (PXRD) but some evidence for doping of 2 into 1α at low concentration (≤15 mol percent) was observed. Attempts to sublime a sample of 10.920.1 led to phase separation with the isolation of needle-shaped crystals of pure 1ß characterized by X-ray diffraction.

Robust S4 ⋠⋠⋠O Supramolecular Synthons: Structures of Radical-Radical Cocrystals [p-XC6 F4 CNSSN]2 [TEMPO] (X=F, Cl, Br, I, CN).

Cocrystallization of the dithiadiazolyl (DTDA) radicals p-XC6 F4 CNSSN (X=F, Cl, Br, I, CN) with TEMPO afforded the 2 : 1 cocrystals [p-XC6 F4 CNSSN]2 [TEMPO] (1-5) whose structures all reflect a common S4 ⋅⋅⋅O supramolecular motif. The nature of this interaction was probed by DFT calculations (M06/aug-cc-pVDZ) on 1 which revealed that the enthalpy of formation of the [C6 F5 CNSSN]2 [TEMPO] supramolecular motif from [C6 F5 CNSSN]2 and TEMPO is substantial (-54.0 kJ mol-1 ). Electronic structure calculations revealed a TEMPO-based doublet S= 1 / 2 configuration as the ground state with limited spin density on the DTDA rings (2.4 %). The corresponding spin quartet state is +78.9 kJ mol-1 higher in energy. An atoms-in-molecules analysis reveals four bond critical points (BCPs) between the TEMPO O and the DTDA S atoms as well as additional BCPs between selected DTDA S atoms and methyl H atoms of the TEMPO molecule. Herein, the structures of 2-5 are considered within the context of a hierarchical view of competing and complementary intermolecular interactions; in particular, the established supramolecular CN⋅⋅⋅S-S synthon is sacrificed in order to form the new S4 ⋅⋅⋅O interaction.

An Assessment of Computational Methods for Calculating Accurate Structures and Energies of Bio-Relevant Polysulfur/Selenium-Containing Compounds.

The heavier chalcogens sulfur and selenium are important in organic and inorganic chemistry, and the role of such chalcogens in biological systems has recently gained more attention. Sulfur and, to a lesser extent selenium, are involved in diverse reactions from redox signaling to antioxidant activity and are considered essential nutrients. We investigated the ability of the DFT functionals (B3LYP, B3PW91, ωB97XD, M06-2X, and M08-HX) relative to electron correlation methods MP2 and QCISD to produce reliable and accurate structures as well as thermochemical data for sulfur/selenium-containing systems. Bond lengths, proton affinities (PA), gas phase basicities (GPB), chalcogen⁻chalcogen bond dissociation enthalpies (BDE), and the hydrogen affinities (HA) of thiyl/selenyl radicals were evaluated for a range of small polysulfur/selenium compounds and cysteine per/polysulfide. The S⁻S bond length was found to be the most sensitive to basis set choice, while the geometry of selenium-containing compounds was less sensitive to basis set. In mixed chalcogens species of sulfur and selenium, the location of the sulfur atom affects the S⁻Se bond length as it can hold more negative charge. PA, GPB, BDE, and HA of selenium systems were all lower, indicating more acidity and more stability of radicals. Extending the sulfur chain in cysteine results in a decrease of BDE and HA, but these plateau at a certain point (199 kJ mol-1 and 295 kJ mol-1), and PA and GPB are also decreased relative to the thiol, indicating that the polysulfur species exist as thiolates in a biological system. In general, it was found that ωB97XD/6-311G(2d,p) gave the most reasonable structures and thermochemistry relative to benchmark calculations. However, nuances in performance are observed and discussed.

Generation and Reactions of a Benzodehydrotropylium Ion-Co2(CO)6 Complex.

A series of 7-methylenedehydrobenzo[7]annulen-5-ol hexacarbonyldicobalt complexes were generated by Hosomi-Sakurai reactions of allylsilanes containing o-alkynylarylaldehyde-Co2(CO)6 complexes. One of the cyclization products was converted into its corresponding dihydrobenzo[7]annulen-7-ol hexacarbonyldicobalt complex, an immediate precursor to a benzodehydrotropylium-Co2(CO)6. The cation was generated in situ and reacted with four nucleophiles, and its aromatic stabilization was determined by computational methods.

Evidence for an Allosteric S-Nitrosoglutathione Binding Site in S-Nitrosoglutathione Reductase (GSNOR).

Current research has identified S-nitrosoglutathione reductase (GSNOR) as the central enzyme for regulating protein S-nitrosylation. In addition, the dysregulation of GSNOR expression is implicated in several organ system pathologies including respiratory, cardiovascular, hematologic, and neurologic, making GSNOR a primary target for pharmacological intervention. This study demonstrates the kinetic activation of GSNOR by its substrate S-nitrosoglutathione (GSNO). GSNOR kinetic analysis data resulted in nonhyperbolic behavior that was successfully accommodated by the Hill-Langmuir equation with a Hill coefficient of +1.75, indicating that the substrate, GSNO, was acting as a positive allosteric affector. Docking and molecular dynamics simulations were used to predict the location of the GSNO allosteric domain comprising the residues Asn185, Lys188, Gly321, and Lys323 in the vicinity of the structural Zn2+-binding site. GSNO binding to Lys188, Gly321, and Lys323 was further supported by hydrogen-deuterium exchange mass spectroscopy (HDXMS), as deuterium exchange significantly decreased at these residues in the presence of GSNO. The site-directed mutagenesis of Lys188Ala and Lys323Ala resulted in the loss of allosteric behavior. Ultimately, this work unambiguously demonstrates that GSNO at large concentrations activates GSNOR by binding to an allosteric site comprised of the residues Asn185, Lys188, Gly321, and Lys323. The identification of an allosteric GSNO-binding domain on GSNOR is significant, as it provides a platform for pharmacological intervention to modulate the activity of this essential enzyme.