Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grasses.

The molecular mechanisms of plant recognition, colonization, and nutrient exchange between diazotrophic endophytes and plants are scarcely known. Herbaspirillum seropedicae is an endophytic bacterium capable of colonizing intercellular spaces of grasses such as rice and sugar cane. The genome of H. seropedicae strain SmR1 was sequenced and annotated by The Paraná State Genome Programme--GENOPAR. The genome is composed of a circular chromosome of 5,513,887 bp and contains a total of 4,804 genes. The genome sequence revealed that H. seropedicae is a highly versatile microorganism with capacity to metabolize a wide range of carbon and nitrogen sources and with possession of four distinct terminal oxidases. The genome contains a multitude of protein secretion systems, including type I, type II, type III, type V, and type VI secretion systems, and type IV pili, suggesting a high potential to interact with host plants. H. seropedicae is able to synthesize indole acetic acid as reflected by the four IAA biosynthetic pathways present. A gene coding for ACC deaminase, which may be involved in modulating the associated plant ethylene-signaling pathway, is also present. Genes for hemagglutinins/hemolysins/adhesins were found and may play a role in plant cell surface adhesion. These features may endow H. seropedicae with the ability to establish an endophytic life-style in a large number of plant species.

Studies on neutral exopolysaccharides produced by the ectomycorrhiza Thelephora terrestris.

The ectomycorrhizal hymenomycete Thelephora terrestris was grown in synthetic pure culture and the production of extracellular polysaccharide was monitored. The exopolysaccharides were prepared by ethanol precipitation and then fractionated into two components using a DEAE-Sepharose column. A neutral fraction (NeP) was fractionated on Sepharose CL-6B, which resulted in three peaks: NeP1, NeP2 and NeP3. NeP1 was filtered through an exclusion membrane and two polysaccharides were obtained (fractions: NeA, NeB). Fraction NeB was submitted to methylated derivatives and 1H-, 13C- and 2D NMR spectroscopic analyses. These analyses showed a main chain of a (1-->6)-linked alpha-D-Manp units substituted at O-2 by a variety of side chains containing alpha-Fucp, beta-Xylp and beta-Galp residues. The main fraction corresponds to mannan as shown by methylation analysis. Size exclusion chromatography (HPSEC-MALLS) of fraction NeB showed a main component of 15.0 kDa. It contained mannose, galactose, fucose and xylose in a molar ratio of 50:29:11:10. The fractions NeP2 and NeP3 were characterised as a (1-->6)-linked beta-glucan (pustulan) and (1-->3)-linked beta-glucan, respectively.