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1.
Opt Express ; 23(23): 29978-92, 2015 Nov 16.
Artigo em Inglês | MEDLINE | ID: mdl-26698479

RESUMO

Understanding the formation of electrodynamically interacting assemblies of metal nanoparticles requires accurate computational methods for determining the forces and propagating trajectories. However, since computation of electromagnetic forces occurs on attosecond to femtosecond timescales, simulating the motion of colloidal nanoparticles on milliseconds to seconds timescales is a challenging multi-scale computational problem. Here, we present a computational technique for performing accurate simulations of laser-illuminated metal nanoparticles. In the simulation, we self-consistently combine the finite-difference time-domain method for electrodynamics (ED) with Langevin dynamics (LD) for the particle motions. We demonstrate the ED-LD method by calculating the 3D trajectories of a single 100-nm-diameter Ag nanoparticle and optical trapping and optical binding of two and three 150-nm-diameter Ag nanoparticles in simulated optical tweezers. We show that surface charge on the colloidal metal nanoparticles plays an important role in their optically driven self-organization. In fact, these simulations provide a more complete understanding of the assembly of different structures of two and three Ag nanoparticles that have been observed experimentally, demonstrating that the ED-LD method will be a very useful tool for understanding the self-organization of optical matter.

2.
Opt Express ; 15(19): 12017-29, 2007 Sep 17.
Artigo em Inglês | MEDLINE | ID: mdl-19547566

RESUMO

The plasmon resonance-based optical trapping (PREBOT) method is used to achieve stable trapping of metallic nanoparticles of different shapes and composition, including Au bipyramids and Au/Ag core/shell nanorods. In all cases the longitudinal plasmon mode of these anisotropic particles is used to enhance the gradient force of an optical trap, thereby increasing the strength of the trap potential. Specifically, the trapping laser is slightly detuned to the long-wavelength side of the longitudinal plasmon resonance where the sign of the real component of the polarizability leads to an attractive gradient force. A second (femtosecond pulsed) laser is used to excite two-photon fluorescence for detection of the trapped nanoparticles. Two-photon fluorescence time trajectories are recorded for up to 20 minutes for single and multiple particles in the trap. In the latter case, a stepwise increase reflects sequential loading of single Au bipyramids. The nonlinearity of the amplitude and noise with step number are interpreted as arising from interactions or enhanced local fields amongst the trapped particles and fluctuations in the arrangements thereof.

3.
Biophys J ; 72(1): 5-17, 1997 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-8994588

RESUMO

Classical molecular dynamics simulations are used to investigate the nuclear motions associated with photoinduced electron transfer in plastocyanin. The blue copper protein is modeled using a molecular mechanics potential; potential parameters for the copper-protein interactions are determined using an x-ray crystallographic structure and absorption and resonance Raman spectra. Molecular dynamics simulations yield a variety of information about the ground (oxidized) and optically excited (charge-transfer) states: 1) The probability distribution of the potential difference between the states, which is used to determine the coordinate and energy displacements, places the states well within the Marcus inverted region. 2) The two-time autocorrelation function of the difference potential in the ground state and the average of the difference potential after instantaneous excitation to the excited state are very similar (confirming linear response in this system); their decay indicates that vibrational relaxation occurs in about 1 ps in both states. 3) The spectral densities of various internal coordinates begin to identify the vibrations that affect the optical transition; the spectral density of the difference potential correlation function should also prove useful in quantum simulations of the back electron transfer. 4) Correlation functions of the protein atomic motions with the difference potential show that the nuclear motions are correlated over a distance of more than 20 A, especially along proposed electron transport paths.


Assuntos
Plastocianina/química , Plastocianina/metabolismo , Conformação Proteica , Sítios de Ligação , Simulação por Computador , Cobre , Transporte de Elétrons , Matemática , Modelos Moleculares , Fotoquímica , Plastocianina/efeitos da radiação , Probabilidade
4.
Appl Opt ; 38(36): 7386-92, 1999 Dec 20.
Artigo em Inglês | MEDLINE | ID: mdl-18324289

RESUMO

The construction, modeling, and performance characteristics of a new resonator design for ultrafast cavity-dumped oscillators are presented. An acousto-optic Bragg cell was incorporated at the end of the longer arm of a Ti:sapphire oscillator rather than in the shorter arm as in several recent studies. The new arrangement improves the pulse intensity stability of the oscillator and significantly reduces the effort required in construction. The experimental findings are supported by comparison of the stability regions of the laser cavities based on the two different designs. To demonstrate the potential of cavity-dumped oscillators for spatially resolved ultrafast spectroscopy studies, the pulse duration is characterized at the focal plane of two achromatic high-N.A. oil-immersion objectives with different amounts of flat-field correction. Transform-limited pulse widths as short as 15 fs are obtained. To our knowledge, this is the shortest pulse duration measured with true high-N.A. (N.A. > 1) focusing conditions.

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