Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Elevated rates of horizontal gene transfer in the industrialized human microbiome.

Groussin, Mathieu; Poyet, Mathilde; Sistiaga, Ainara; Kearney, Sean M; Moniz, Katya; Noel, Mary; Hooker, Jeff; Gibbons, Sean M; Segurel, Laure; Froment, Alain; Mohamed, Rihlat Said; Fezeu, Alain; Juimo, Vanessa A; Lafosse, Sophie; Tabe, Francis E; Girard, Catherine; Iqaluk, Deborah; Nguyen, Le Thanh Tu; Shapiro, B Jesse; Lehtimäki, Jenni; Ruokolainen, Lasse; Kettunen, Pinja P; Vatanen, Tommi; Sigwazi, Shani; Mabulla, Audax; Domínguez-Rodrigo, Manuel; Nartey, Yvonne A; Agyei-Nkansah, Adwoa; Duah, Amoako; Awuku, Yaw A; Valles, Kenneth A; Asibey, Shadrack O; Afihene, Mary Y; Roberts, Lewis R; Plymoth, Amelie; Onyekwere, Charles A; Summons, Roger E; Xavier, Ramnik J; Alm, Eric J.

Cell ; 184(8): 2053-2067.e18, 2021 04 15.

Artigo em Inglês | MEDLINE | ID: mdl-33794144

2.

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.

Andersen, Kristian G; Shapiro, B Jesse; Matranga, Christian B; Sealfon, Rachel; Lin, Aaron E; Moses, Lina M; Folarin, Onikepe A; Goba, Augustine; Odia, Ikponmwonsa; Ehiane, Philomena E; Momoh, Mambu; England, Eleina M; Winnicki, Sarah; Branco, Luis M; Gire, Stephen K; Phelan, Eric; Tariyal, Ridhi; Tewhey, Ryan; Omoniwa, Omowunmi; Fullah, Mohammed; Fonnie, Richard; Fonnie, Mbalu; Kanneh, Lansana; Jalloh, Simbirie; Gbakie, Michael; Saffa, Sidiki; Karbo, Kandeh; Gladden, Adrianne D; Qu, James; Stremlau, Matthew; Nekoui, Mahan; Finucane, Hilary K; Tabrizi, Shervin; Vitti, Joseph J; Birren, Bruce; Fitzgerald, Michael; McCowan, Caryn; Ireland, Andrea; Berlin, Aaron M; Bochicchio, James; Tazon-Vega, Barbara; Lennon, Niall J; Ryan, Elizabeth M; Bjornson, Zach; Milner, Danny A; Lukens, Amanda K; Broodie, Nisha; Rowland, Megan; Heinrich, Megan; Akdag, Marjan.

Cell ; 162(4): 738-50, 2015 Aug 13.

Artigo em Inglês | MEDLINE | ID: mdl-26276630

3.

Efficient computation of contributional diversity metrics from microbiome data with FuncDiv.

Douglas, Gavin M; Kim, Sunu; Langille, Morgan G I; Shapiro, B Jesse.

Bioinformatics ; 39(1)2023 01 01.

Artigo em Inglês | MEDLINE | ID: mdl-36519836

4.

Predicting Vibrio cholerae Infection and Disease Severity Using Metagenomics in a Prospective Cohort Study.

Levade, Inès; Saber, Morteza M; Midani, Firas S; Chowdhury, Fahima; Khan, Ashraful I; Begum, Yasmin A; Ryan, Edward T; David, Lawrence A; Calderwood, Stephen B; Harris, Jason B; LaRocque, Regina C; Qadri, Firdausi; Shapiro, B Jesse; Weil, Ana A.

J Infect Dis ; 223(2): 342-351, 2021 02 03.

Artigo em Inglês | MEDLINE | ID: mdl-32610345

5.

Resistance, resilience, and functional redundancy of freshwater bacterioplankton communities facing a gradient of agricultural stressors in a mesocosm experiment.

Barbosa da Costa, Naíla; Fugère, Vincent; Hébert, Marie-Pier; Xu, Charles C Y; Barrett, Rowan D H; Beisner, Beatrix E; Bell, Graham; Yargeau, Viviane; Fussmann, Gregor F; Gonzalez, Andrew; Shapiro, B Jesse.

Mol Ecol ; 30(19): 4771-4788, 2021 10.

Artigo em Inglês | MEDLINE | ID: mdl-34324752

6.

Universal Statistics of Waves in a Random Time-Varying Medium.

Carminati, R; Chen, H; Pierrat, R; Shapiro, B.

Phys Rev Lett ; 127(9): 094101, 2021 Aug 27.

Artigo em Inglês | MEDLINE | ID: mdl-34506172

7.

Widespread agrochemicals differentially affect zooplankton biomass and community structure.

Hébert, Marie-Pier; Fugère, Vincent; Beisner, Beatrix E; Barbosa da Costa, Naíla; Barrett, Rowan D H; Bell, Graham; Shapiro, B Jesse; Yargeau, Viviane; Gonzalez, Andrew; Fussmann, Gregor F.

Ecol Appl ; 31(7): e02423, 2021 10.

Artigo em Inglês | MEDLINE | ID: mdl-34288209

8.

The evolution of realized niches within freshwater Synechococcus.

Tromas, Nicolas; Taranu, Zofia E; Castelli, Mathieu; Pimentel, Juliana S M; Pereira, Daniel A; Marcoz, Romane; Shapiro, B Jesse; Giani, Alessandra.

Environ Microbiol ; 22(4): 1238-1250, 2020 04.

Artigo em Inglês | MEDLINE | ID: mdl-31997531

9.

What Is Speciation?

Shapiro, B Jesse; Leducq, Jean-Baptiste; Mallet, James.

PLoS Genet ; 12(3): e1005860, 2016 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-27030977

10.

Mitochondrial Recombination and Introgression during Speciation by Hybridization.

Leducq, Jean-Baptiste; Henault, Mathieu; Charron, Guillaume; Nielly-Thibault, Lou; Terrat, Yves; Fiumera, Heather L; Shapiro, B Jesse; Landry, Christian R.

Mol Biol Evol ; 34(8): 1947-1959, 2017 08 01.

Artigo em Inglês | MEDLINE | ID: mdl-28444332

11.

Optical properties of molecular nanocrystals consisting of J-aggregates of anionic and cationic cyanine dyes.

Shapiro, B I; Nekrasov, A D; Krivobok, V S; Lebedev, V S.

Opt Express ; 26(23): 30324-30337, 2018 Nov 12.

Artigo em Inglês | MEDLINE | ID: mdl-30469907

12.

Population genomics of Mycobacterium tuberculosis in the Inuit.

Lee, Robyn S; Radomski, Nicolas; Proulx, Jean-Francois; Levade, Ines; Shapiro, B Jesse; McIntosh, Fiona; Soualhine, Hafid; Menzies, Dick; Behr, Marcel A.

Proc Natl Acad Sci U S A ; 112(44): 13609-14, 2015 Nov 03.

Artigo em Inglês | MEDLINE | ID: mdl-26483462

13.

Dynamic inversion enables external magnets to concentrate ferromagnetic rods to a central target.

Nacev, A; Weinberg, I N; Stepanov, P Y; Kupfer, S; Mair, L O; Urdaneta, M G; Shimoji, M; Fricke, S T; Shapiro, B.

Nano Lett ; 15(1): 359-64, 2015 Jan 14.

Artigo em Inglês | MEDLINE | ID: mdl-25457292

14.

Shaping magnetic fields to direct therapy to ears and eyes.

Shapiro, B; Kulkarni, S; Nacev, A; Sarwar, A; Preciado, D; Depireux, D A.

Annu Rev Biomed Eng ; 16: 455-81, 2014 Jul 11.

Artigo em Inglês | MEDLINE | ID: mdl-25014789

15.

Lipid metabolism.

Shapiro, B.

Annu Rev Biochem ; 36: 247-70, 1967.

Artigo em Inglês | MEDLINE | ID: mdl-18257722

16.

Shotgun microbial profiling of fossil remains.

Der Sarkissian, C; Ermini, L; Jónsson, H; Alekseev, A N; Crubezy, E; Shapiro, B; Orlando, L.

Mol Ecol ; 23(7): 1780-98, 2014 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-24612293

17.

Modeling of RNA nanotubes using molecular dynamics simulation.

Badu, S R; Melnik, R; Paliy, M; Prabhakar, S; Sebetci, A; Shapiro, B A.

Eur Biophys J ; 43(10-11): 555-64, 2014 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-25208764

18.

Signatures of natural selection and ecological differentiation in microbial genomes.

Shapiro, B Jesse.

Adv Exp Med Biol ; 781: 339-59, 2014.

Artigo em Inglês | MEDLINE | ID: mdl-24277308

19.

Pseudogenes act as a neutral reference for detecting selection in prokaryotic pangenomes.

Douglas, Gavin M; Shapiro, B Jesse.

Nat Ecol Evol ; 8(2): 304-314, 2024 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-38177690

20.

Snapshot of cyanobacterial toxins in Pakistani freshwater bodies.

Batool, Uzma; Tromas, Nicolas; Simon, Dana F; Sauvé, Sébastien; Shapiro, B Jesse; Ahmed, Mehboob.

Environ Sci Pollut Res Int ; 31(16): 24648-24661, 2024 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-38448773

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