Pesquisa | BVS Doenças Infecciosas e Parasitárias

1.

Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits.

Khasanova, Albina; Edwards, Joseph; Bonnette, Jason; Singer, Esther; Haque, Taslima; Juenger, Thomas E.

Proc Biol Sci ; 290(1991): 20221350, 2023 01 25.

Artigo em Inglês | MEDLINE | ID: mdl-36651054

2.

EcoPLOT: dynamic analysis of biogeochemical data.

Sanchez, Christopher D; Brown, J Benjamin; Gal-Oz, Omree; Singer, Esther.

Bioinformatics ; 38(5): 1480-1482, 2022 02 07.

Artigo em Inglês | MEDLINE | ID: mdl-34927685

3.

MeCorS: Metagenome-enabled error correction of single cell sequencing reads.

Bremges, Andreas; Singer, Esther; Woyke, Tanja; Sczyrba, Alexander.

Bioinformatics ; 32(14): 2199-201, 2016 07 15.

Artigo em Inglês | MEDLINE | ID: mdl-27153586

4.

Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest.

Honeker, Linnea K; Pugliese, Giovanni; Ingrisch, Johannes; Fudyma, Jane; Gil-Loaiza, Juliana; Carpenter, Elizabeth; Singer, Esther; Hildebrand, Gina; Shi, Lingling; Hoyt, David W; Chu, Rosalie K; Toyoda, Jason; Krechmer, Jordan E; Claflin, Megan S; Ayala-Ortiz, Christian; Freire-Zapata, Viviana; Pfannerstill, Eva Y; Daber, L Erik; Meeran, Kathiravan; Dippold, Michaela A; Kreuzwieser, Jürgen; Williams, Jonathan; Ladd, S Nemiah; Werner, Christiane; Tfaily, Malak M; Meredith, Laura K.

Nat Microbiol ; 8(8): 1480-1494, 2023 08.

Artigo em Inglês | MEDLINE | ID: mdl-37524975

5.

Genomic potential of Marinobacter aquaeolei, a biogeochemical "opportunitroph".

Singer, Esther; Webb, Eric A; Nelson, William C; Heidelberg, John F; Ivanova, Natalia; Pati, Amrita; Edwards, Katrina J.

Appl Environ Microbiol ; 77(8): 2763-71, 2011 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-21335390

6.

Impact of Harvest on Switchgrass Leaf Microbial Communities.

Singer, Esther; Carpenter, Elizabeth M; Bonnette, Jason; Woyke, Tanja; Juenger, Thomas E.

Genes (Basel) ; 13(1)2021 12 22.

Artigo em Inglês | MEDLINE | ID: mdl-35052362

7.

Conservation of Endophyte Bacterial Community Structure Across Two Panicum Grass Species.

Singer, Esther; Bonnette, Jason; Woyke, Tanja; Juenger, Thomas E.

Front Microbiol ; 10: 2181, 2019.

Artigo em Inglês | MEDLINE | ID: mdl-31611851

8.

Plant compartment and genetic variation drive microbiome composition in switchgrass roots.

Singer, Esther; Bonnette, Jason; Kenaley, Shawn C; Woyke, Tanja; Juenger, Thomas E.

Environ Microbiol Rep ; 11(2): 185-195, 2019 04.

Artigo em Inglês | MEDLINE | ID: mdl-30537406

9.

Soil exchange rates of COS and CO¹⁸O differ with the diversity of microbial communities and their carbonic anhydrase enzymes.

Meredith, Laura K; Ogée, Jérôme; Boye, Kristin; Singer, Esther; Wingate, Lisa; von Sperber, Christian; Sengupta, Aditi; Whelan, Mary; Pang, Erin; Keiluweit, Marco; Brüggemann, Nicolas; Berry, Joe A; Welander, Paula V.

ISME J ; 13(2): 290-300, 2019 02.

Artigo em Inglês | MEDLINE | ID: mdl-30214028

10.

Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.

Sevim, Volkan; Lee, Juna; Egan, Robert; Clum, Alicia; Hundley, Hope; Lee, Janey; Everroad, R Craig; Detweiler, Angela M; Bebout, Brad M; Pett-Ridge, Jennifer; Göker, Markus; Murray, Alison E; Lindemann, Stephen R; Klenk, Hans-Peter; O'Malley, Ronan; Zane, Matthew; Cheng, Jan-Fang; Copeland, Alex; Daum, Christopher; Singer, Esther; Woyke, Tanja.

Sci Data ; 6(1): 285, 2019 11 26.

Artigo em Inglês | MEDLINE | ID: mdl-31772173

11.

Author Correction: Drought re-routes soil microbial carbon metabolism towards emission of volatile metabolites in an artificial tropical rainforest.

Honeker, Linnea K; Pugliese, Giovanni; Ingrisch, Johannes; Fudyma, Jane; Gil-Loaiza, Juliana; Carpenter, Elizabeth; Singer, Esther; Hildebrand, Gina; Shi, Lingling; Hoyt, David W; Chu, Rosalie K; Toyoda, Jason; Krechmer, Jordan E; Claflin, Megan S; Ayala-Ortiz, Christian; Freire-Zapata, Viviana; Pfannerstill, Eva Y; Daber, L Erik; Meeran, Kathiravan; Dippold, Michaela A; Kreuzwieser, Jürgen; Williams, Jonathan; Ladd, S Nemiah; Werner, Christiane; Tfaily, Malak M; Meredith, Laura K.

Nat Microbiol ; 9(4): 1146-1147, 2024 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-37803148

12.

BBMerge - Accurate paired shotgun read merging via overlap.

Bushnell, Brian; Rood, Jonathan; Singer, Esther.

PLoS One ; 12(10): e0185056, 2017.

Artigo em Inglês | MEDLINE | ID: mdl-29073143

13.

Capturing the genetic makeup of the active microbiome in situ.

Singer, Esther; Wagner, Michael; Woyke, Tanja.

ISME J ; 11(9): 1949-1963, 2017 09.

Artigo em Inglês | MEDLINE | ID: mdl-28574490

14.

An ancestral Matryoshka doll.

Singer, Esther.

Nat Rev Microbiol ; 19(3): 140, 2021 03.

Artigo em Inglês | MEDLINE | ID: mdl-33420400

15.

Next generation sequencing data of a defined microbial mock community.

Singer, Esther; Andreopoulos, Bill; Bowers, Robert M; Lee, Janey; Deshpande, Shweta; Chiniquy, Jennifer; Ciobanu, Doina; Klenk, Hans-Peter; Zane, Matthew; Daum, Christopher; Clum, Alicia; Cheng, Jan-Fang; Copeland, Alex; Woyke, Tanja.

Sci Data ; 3: 160081, 2016 Sep 27.

Artigo em Inglês | MEDLINE | ID: mdl-27673566

16.

High-resolution phylogenetic microbial community profiling.

Singer, Esther; Bushnell, Brian; Coleman-Derr, Devin; Bowman, Brett; Bowers, Robert M; Levy, Asaf; Gies, Esther A; Cheng, Jan-Fang; Copeland, Alex; Klenk, Hans-Peter; Hallam, Steven J; Hugenholtz, Philip; Tringe, Susannah G; Woyke, Tanja.

ISME J ; 10(8): 2020-32, 2016 08.

Artigo em Inglês | MEDLINE | ID: mdl-26859772

17.

Similar Microbial Communities Found on Two Distant Seafloor Basalts.

Singer, Esther; Chong, Lauren S; Heidelberg, John F; Edwards, Katrina J.

Front Microbiol ; 6: 1409, 2015.

Artigo em Inglês | MEDLINE | ID: mdl-26733957

18.

Metagenomic insights into the dominant Fe(II) oxidizing Zetaproteobacteria from an iron mat at Lo´ihi, Hawai´l.

Singer, Esther; Heidelberg, John F; Dhillon, Ashita; Edwards, Katrina J.

Front Microbiol ; 4: 52, 2013.

Artigo em Inglês | MEDLINE | ID: mdl-23518919

19.

Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium.

Singer, Esther; Emerson, David; Webb, Eric A; Barco, Roman A; Kuenen, J Gijs; Nelson, William C; Chan, Clara S; Comolli, Luis R; Ferriera, Steve; Johnson, Justin; Heidelberg, John F; Edwards, Katrina J.

PLoS One ; 6(9): e25386, 2011.

Artigo em Inglês | MEDLINE | ID: mdl-21966516

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