The Balance between Hydrogen Bonds, Halogen Bonds, and Chalcogen Bonds in the Crystal Structures of a Series of 1,3,4-Chalcogenadiazoles.

In order to explore how specific atom-to-atom replacements change the electrostatic potentials on 1,3,4-chalcogenadiazole derivatives, and to deliberately alter the balance between intermolecular interactions, four target molecules were synthesized and characterized. DFT calculations indicated that the atom-to-atom substitution of Br with I, and S with Se enhanced the σ-hole potentials, thus increasing the structure directing ability of halogen bonds and chalcogen bonds as compared to intermolecular hydrogen bonding. The delicate balance between these intermolecular forces was further underlined by the formation of two polymorphs of 5-(4-iodophenyl)-1,3,4-thiadiazol-2-amine; Form I displayed all three interactions while Form II only showed hydrogen and chalcogen bonding. The results emphasize that the deliberate alterations of the electrostatic potential on polarizable atoms can cause specific and deliberate changes to the main synthons and subsequent assemblies in the structures of this family of compounds.

The Impact of Halogen Substituents on the Synthesis and Structure of Co-Crystals of Pyridine Amides.

Strategies for co-crystal synthesis tend to employ either hydrogen- or halogen-bonds between different molecules. However, when both interactions are present, the structural influence that they may exert on the resulting assembly is difficult to predict a priori. To shed some light on this supramolecular challenge, we attempted to co-crystallize ten aliphatic dicarboxylic acids (co-formers) with three groups of target molecules; N-(pyridin-2-yl)picolinamides (2Pyr-X), N-(pyridin-2-yl)nicotinamides (3Pyr-X), N-(pyridin-2-yl)isonicotinamides (4Pyr-X); X=Cl/ Br/ I. The structural outcomes were compared with co-crystals prepared from the non-halogenated targets. As expected, none of the reactions with 2Pyr-X produced co-crystals due to the presence of a very stable intramolecular N-H···N hydrogen bond. In the 3Pyr series, all six structures obtained showed the same synthons, -COOH···N(py) and -COOH···N(py)-NH, that were found in the non-halogenated parent 3Pyr and were additionally accompanied by structure directing X···O(OH) interactions (X=Br/I). The co-crystals of the unhalogenated parent 4Pyr co-crystals assembled via intermolecular -COOH···N(py) and -COOH···N(py)-NH synthons. Three of the analogues 4Pyr-X co-crystals displayed only COOH···N(py) and -COOH···N(py)-NH interactions. The three co-crystals of 4Pyr-X with fumaric acid (for which no analogues structures with 4Pyr are known) formed -COOH···N(py)-NH and -NH···O=C hydrogen bonds and showed no structure-directing halogen bonds. In three co-crystals of 4Pyr-I in which -COOH···N(py)-NH hydrogen bond was present, a halogen-bond based -I···N(py) synthon replaced the -COOH···N(py) motif observed in the parent structures. The structural influence of the halogen atoms increased in the order of Cl < Br < I, as the size of σ-holes increased. Finally, it is noteworthy that isostructurality among structures of the homomeric targets was not translated to structural similarities between their respective co-crystals.

Structural Examination of Halogen-Bonded Co-Crystals of Tritopic Acceptors.

A series of tritopic N-heterocyclic compounds containing electrostatically and geometrically equivalent binding sites were synthesized and subjected to systematic co-crystallizations with selected perfluoroiodoarenes in order to map out their structural landscapes. More than 70% of the attempted reactions produced a co-crystal as indicated by IR spectroscopy. Four new crystal structures are reported and in all of them, at least one potential binding site on the acceptor is left vacant. The absence of halogen bonds to all sites can be ascribed primarily due to deactivation of the σ-hole on the iodo-arene donors and partially due to steric hindrance. The tritopic acceptors containing 5,6-dimethylbenzimidazole derivatives yield discrete tetrameric aggregates in the solid state, whereas the pyrazole and imidazole analogues assemble into halogen-bonded 1-D chains.

Enantioselective copper catalysed C-H insertion reaction of 2-sulfonyl-2-diazoacetamides to form γ-lactams.

The first examples of asymmetric copper-catalysed intramolecular C-H insertion reactions of 2-sulfonyl-2-diazoacetamides are described; trans γ-lactams with up to 82% ee are achieved with the CuCl2-bisoxazoline-NaBARF catalyst system. The reactions generally display high efficiency and high trans selectivity, and also a strong regiochemical preference for insertion to lead to the formation of 5-membered rings over 4-membered rings. In cases where there are competing C-H insertion pathways available, to form sulfolanes or thiopyrans, only the insertion into the amide chain to form γ-lactams is observed. With phenylsulfonyl derivatives, a minor competing C-H insertion pathway leading to ß-lactams is seen; interestingly, changing the identity of the copper ligand changes the product ratio of ß/γ-lactams. The copper catalysed reactions compare favorably in terms of efficiency and enantioselectivity to the corresponding reactions catalysed by commercially available chiral rhodium catalysts.

Evaluating structure-property relationship in a new family of mechanically flexible co-crystals.

A structure-property analysis of ten compositionally and chemically similar co-crystals of N-(pyridin-2-yl)alkylamides and carboxylic acids shows that three co-crystals of targets bearing a methyl chain were brittle, while the remaining co-crystals of targets bearing ethyl or propyl chains were flexible. Five of these displayed elastic deformation while two displayed plastic deformation. Compounds with different mechanical behaviour (brittle, plastic, and elastic deformation) in response to external mechanical stimuli could be organized into structurally similar groups based on the presence of specific intermolecular interactions and packing features in each crystal structure.

Establishing Halogen-Bond Preferences in Molecules with Multiple Acceptor Sites.

The interplay between hydrogen bonds (HBs) and halogen bonds (XBs), has been addressed by co-crystallizing two halogen bond donors, 1,4-diiodotetrafluorbenzene(DITFB) and 1,3,5-trifluoro-2,4,6-triiodobenzene(TITFB) with four series of targets; N-(pyridin-2-yl)benzamide (Bz-X), N-(pyridin-2-yl)picolinamides (2Pyr-X), N-(pyridin-2-yl)nicotinamides (3Pyr-X), N-(pyridin-2-yl)isonicotinamides (4Pyr-X); X=H/Cl/Br/I. The structural outcomes were compared with interactions in the targets themselves. 13 co-crystals were analysed by single-crystal X-ray diffraction (SCXRD). In all three co-crystals from the 2Pyr series, the intramolecular HB remained intact while the XB donors engaged with the N(pyr) or O=C sites. In the ten co-crystals from the other three series, the intermolecular HBs present in the individual targets were disrupted in 9/10 cases. Overall, the acceptor sites selected by the halogen-bond donors in these targets were distributed as follows; N(pyr)=81 %, O=C (15 %) or π (4 %).

Modulating the physical properties of solid forms of urea using co-crystallization technology.

The solid-form landscape of urea was explored using full interaction maps (FIMs) and data from the CSD to develop optimum protocols for synthesizing co-crystals of urea. As a result, 49 of the 60 attempted reactions produced new co-crystals, and the crystal structures of four of these are presented. Moreover, the goal of reducing the solubility and lowering the hygroscopicity of the parent compound was achieved, which in turn offers new opportunities for application as a slow-release fertilizer with limited hygroscopicity, thereby reducing many current problems of transport, handling, and storage of urea.

A versatile and green mechanochemical route for aldehyde-oxime conversions.

A robust, facile and solvent-free mechanochemical path for aldehyde-oxime transformations using hydroxylamine and NaOH is explored; the method is suitable for aromatic and aliphatic aldehydes decorated with a range of substituents.

Halogen bonding or close packing? Examining the structural landscape in a series of Cu(II)-acac complexes.

A series of four bifunctional ligands based on ß-diketonate moieties bearing methyl (2), chloro (3), bromo (4) and iodo (5) substituents and their corresponding Cu(II) complexes have been synthesized and crystallographically characterized in order to explore the possibility of using halogen bonds for the directed assembly of predictable architectures in coordination chemistry. The four ligands have characteristic O-H···O intramolecular hydrogen bonds and the structure of ligand 2 is close packed whereas, ligands 3, 4 and 5 contain extended 1-D architectures based on C=O···X halogen bonds. In each case, the halogen-bond donor seeks out the most powerful halogen-bond acceptor (based on electrostatic considerations). In the corresponding Cu(II) complexes the coordination chemistry remains a constant throughout the series, the four-coordinate metal ion sits in a slightly distorted square-planar arrangement, and there are no unexpected appearances of coordinated or non-coordinated solvent molecules. Furthermore, the most powerful halogen-bond acceptors have been almost depleted of charge as a result of metal chelation and none of the potential halogen-bond interactions are capable of competing with the head-to-head close packing that is observed in the methyl, chloro, and bromo, substituted Cu(II) complexes. The enhanced polarizability of the iodine atom, produces a more electropositive surface which means that this structure cannot accommodate a linear head-to-head arrangement due to electrostatic repulsion, and thus [Cu(5)(2)] adopts a unique close-packed structure very different from the other three iso-structural complexes, [Cu(2)(2)]-[Cu(4)(2)].