Parkinson disease-associated mutation R1441H in LRRK2 prolongs the "active state" of its GTPase domain.

Mutation in leucine-rich-repeat kinase 2 (LRRK2) is a common cause of Parkinson disease (PD). A disease-causing point mutation R1441H/G/C in the GTPase domain of LRRK2 leads to overactivation of its kinase domain. However, the mechanism by which this mutation alters the normal function of its GTPase domain [Ras of complex proteins (Roc)] remains unclear. Here, we report the effects of R1441H mutation (RocR1441H) on the structure and activity of Roc. We show that Roc forms a stable monomeric conformation in solution that is catalytically active, thus demonstrating that LRRK2 is a bona fide self-contained GTPase. We further show that the R1441H mutation causes a twofold reduction in GTPase activity without affecting the structure, thermal stability, and GDP-binding affinity of Roc. However, the mutation causes a twofold increase in GTP-binding affinity of Roc, thus suggesting that the PD-causing mutation R1441H traps Roc in a more persistently activated state by increasing its affinity for GTP and, at the same time, compromising its GTP hydrolysis.

Crystal structure of Bacillus subtilis GabR, an autorepressor and transcriptional activator of gabT.

Bacillus subtilis GabR is a transcription factor that regulates gamma-aminobutyric acid (GABA) metabolism. GabR is a member of the understudied MocR/GabR subfamily of the GntR family of transcription regulators. A typical MocR/GabR-type regulator is a chimeric protein containing a short N-terminal helix-turn-helix DNA-binding domain and a long C-terminal pyridoxal 5'-phosphate (PLP)-binding putative aminotransferase domain. In the presence of PLP and GABA, GabR activates the gabTD operon, which allows the bacterium to use GABA as nitrogen and carbon sources. GabR binds to its own promoter and represses gabR transcription in the absence of GABA. Here, we report two crystal structures of full-length GabR from B. subtilis: a 2.7-Å structure of GabR with PLP bound and the 2.55-Å apo structure of GabR without PLP. The quaternary structure of GabR is a head-to-tail domain-swap homodimer. Each monomer comprises two domains: an N-terminal winged-helix DNA-binding domain and a C-terminal PLP-binding type I aminotransferase-like domain. The winged-helix domain contains putative DNA-binding residues conserved in other GntR-type regulators. Together with sedimentation velocity and fluorescence polarization assays, the crystal structure of GabR provides insights into DNA binding by GabR at the gabR and gabT promoters. The absence of GabR-mediated aminotransferase activity in the presence of GABA and PLP, and the presence of an active site configuration that is incompatible with stabilization of the GABA external aldimine suggest that a GabR aminotransferase-like activity involving GABA and PLP is not essential to its primary function as a transcription regulator.

Specificity and function of archaeal DNA replication initiator proteins.

Chromosomes with multiple DNA replication origins are a hallmark of Eukaryotes and some Archaea. All eukaryal nuclear replication origins are defined by the origin recognition complex (ORC) that recruits the replicative helicase MCM(2-7) via Cdc6 and Cdt1. We find that the three origins in the single chromosome of the archaeon Sulfolobus islandicus are specified by distinct initiation factors. While two origins are dependent on archaeal homologs of eukaryal Orc1 and Cdc6, the third origin is instead reliant on an archaeal Cdt1 homolog. We exploit the nonessential nature of the orc1-1 gene to investigate the role of ATP binding and hydrolysis in initiator function in vivo and in vitro. We find that the ATP-bound form of Orc1-1 is proficient for replication and implicates hydrolysis of ATP in downregulation of origin activity. Finally, we reveal that ATP and DNA binding by Orc1-1 remodels the protein's structure rather than that of the DNA template.

Spectroscopy of the OC-HF hydrogen-bonded complex at vHF=3.

The v(HF)=3 levels of the linear OC-HF complex are observed in the range of 10,800-11,500 cm(-1) using intracavity Ti-sapphire laser-induced fluorescence. The vibrational predissociation linewidths of both (30000) and (3001(1)0) states exceed 5 GHz; thus, the measured spectra are not rotationally resolvable. Under the assumption that these levels are not strongly perturbed, the rotational constants of the two levels are determined to be 0.1100(1) cm(-1) for (30000), 0.1081(1), and 0.1065(1) cm(-1) for f and e sublevels of (3001(1)0), respectively, through band contour fitting. The (30000)<--(00000) band origin is at 10,894.46(1) cm(-1), showing a HF wave number redshift of 478.3 cm(-1). The 4.07 redshift ratio of v(HF)=3 to that of v(HF)=1 indicates a significantly nonlinear increase of the intermolecular interaction energy through HF valence excitation. An ab initio interaction potential surface for HF valence coordinates varying from 0.8 to 1.25 A is used to examine vibrational dynamics. The HF valence vibration v(1) is treated perturbatively, showing that the vibrational redshifts are determined essentially in first order with only a very small second-order contribution. The (3001(1)0)<--(00000) combination transition is observed with the band origin at 11,432.66(1) cm(-1), giving the HF intermolecular bending mode to be 538.2 cm(-1). The high frequency of this vibration, compared to that in similar HF complexes, shows the strong angular anisotropy of the intermolecular interaction potential of OC-HF with respect to the HF subunit. The lifetime of the (3001(1)0) level increases to 28 ps from 14 ps for (30000).