Diversity of Microbiomes Across a 13,000-Year-Old Amazon Sediment.

The microbiome is fundamental for understanding bacterial activities in sediments. However, only a limited number of studies have addressed the microbial diversity of Amazonian sediments. Here, we studied the microbiome of sediments from a 13,000-year BP core retrieved in a floodplain lake in Amazonia using metagenomics and biogeochemistry. Our aim was to evaluate the possible environmental influence over a river to a lake transition using a core sample. To this end, we sampled a core in the Airo Lake, a floodplain lake in the Negro River basin. The Negro River is the largest tributary of the Amazon River. The obtained core was divided into three strata: (i) surface, almost complete separation of the Airo Lake from the Negro River when the environment becomes more lentic with greater deposition of organic matter (black-colored sediment); (ii) transitional environment (reddish brown); and (iii) deep, environment with a tendency for greater past influence of the Negro River (brown color). The deepest sample possibly had the greatest influence of the Negro River as it represented the bottom of this river in the past, while the surface sample is the current Airo Lake bottom. In total, six metagenomes were obtained from the three different depth strata (total number of reads: 10.560.701; sequence length: 538 ± 24, mean ± standard deviation). The older (deeper) sediment strata contained a higher abundance of Burkholderia, Chitinophaga, Mucilaginibacter, and Geobacter, which represented ~ 25% of the metagenomic sequences. On the other hand, the more recent sediment strata had mainly Thermococcus, Termophilum, Sulfolobus, Archaeoglobus, and Methanosarcina (in total 11% of the metagenomic sequences). The sequence data were binned into metagenome-assembled genomes (MAGs). The majority of the obtained MAGs (n = 16) corresponded to unknown taxa, suggesting they may belong to new species. The older strata sediment microbiome was enriched with sulfur cycle genes, TCA cycle, YgfZ, and ATP-dependent proteolysis in bacteria. Meanwhile, serine-glyoxylate cycle, stress response genes, bacterial cell division, cell division-ribosomal stress protein cluster, and oxidative stress increased in the younger strata. Metal resistance and antimicrobial resistance genes were found across the entire core, including genes coding for fluoroquinolones, polymyxin, vancomycin, and multidrug resistance transporters. These findings depict the possible microbial diversity during the depositional past events and provided clues of the past microbial metabolism throughout time.

Palynological evidence of the replacement of the hygrophilous forest by field vegetation during the last 7,000 years B.P. in the northern coast of Rio de Janeiro, Brazil.

Historians claim that European colonizers of the northern coast of Rio de Janeiro State found vast herbaceous fields when arrived in this region. Hypotheses about the origin of these fields include forest burning by the Goitacás indians and periodical floods by the Paraíba do Sul River and the lagoon system. The palynologycal analysis of two lake cores obtained in the municipality of Campos dos Goytacazes revealed opening episodes of hygrophilous forest and the establishment of field vegetation, recorded at ca. 6,500 and ca. 4,000 (14)C yr BP. The partial replacement of forest by field vegetation in the first episode was probably caused by floods of the lower areas during the development of the Holocene lagoon phase. During the second episode, successions of vegetational patterns occurred due to lowering of the sea level. Drying and enlarging of the coastal plain have allowed its colonization by herbs and heliophyte plants. The palynological analysis does not provide any evidence that sustains the theories of use of fire and agricultural activities by indigenous groups during these periods.

Palynological evidence of the replacement of the hygrophilous forest by field vegetation during the last 7,000 years B.P. in the northern coast of Rio de Janeiro, Brazil

Historians claim that European colonizers of the northern coast of Rio de Janeiro State found vast herbaceous fields when arrived in this region. Hypotheses about the origin of these fields include forest burning by the Goitacás indians and periodical floods by the Paraíba do Sul River and the lagoon system. The palynologycal analysis of two lake cores obtained in the municipality of Campos dos Goytacazes revealed opening episodes of hygrophilous forest and the establishment of field vegetation, recorded at ca. 6,500 and ca. 4,000 14C yr BP. The partial replacement of forest by field vegetation in the first episode was probably caused by floods of the lower areas during the development of the Holocene lagoon phase. During the second episode, successions of vegetational patterns occurred due to lowering of the sea level. Drying and enlarging of the coastal plain have allowed its colonization by herbs and heliophyte plants. The palynological analysis does not provide any evidence that sustains the theories of use of fire and agricultural activities by indigenous groups during these periods.

Os historiadores citam que os europeus colonizadores da costa norte do Estado do Rio de Janeiro encontraram vastos campos herbáceos quando chegaram a essa região. As hipóteses sobre a origem desses campos incluem aplicação de "queimada"pelos índios Goitacás e periódicas inundações do rio Paraíba do Sul e sistemas lagunares. A análise palinológica de dois testemunhos de sondagem obtidos no município de Campos dos Goytacazes revelou epsódios de abertura da floresta higrófila e o estabelecimento da vegetação campestre, datado sem ca. 6.500 e 4.000 14C anos AP. O primeiro epsódio de substituição parcial da floresta pela vegetação campestre se deu provavelmente pelas inundações das áreas baixas durante o desenvolvimento da fase lagunar holocênica. No segundo epsódio, os padrões de sucessão da vegetação ocorreram como consequência do abaixamento do nível do mar. O ressecamento e a progressão da planície costeira permitiram sua colonização pelas plantas herbáceas heliófitas. A análise palinológica não forneceu qualquer evidência que apoie as teorias do uso do fogo e da prática de atividades agrícolas por grupos indígenas durante esses períodos.