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1.
J Am Chem Soc ; 2023 Feb 13.
Artigo em Inglês | MEDLINE | ID: mdl-36780205

RESUMO

Spirooxindoles have emerged as promising architectures for engineering biologically active compounds. The diastereodivergent construction of unique scaffolds of this type with full control of continuous chiral centers including an all-carbon quaternary stereogenic center is yet to be developed. Here, we report an unprecedented diastereodivergent desymmetric [3 + 3] annulation of oxabicyclic alkenes with enals enabled by N-heterocyclic carbene (NHC)/Rh cooperative catalysis, leading to a series of enantiomerically enriched spirooxindole lactones with excellent enantioselectivities (up to >99% ee) and diastereoselectivities (up to >95:5 dr). The combined catalyst system comprises a rhodium complex that controls the configuration at the electrophilic carbon and an NHC catalyst that controls the configuration at the nucleophilic oxindole-containing carbon; thus, four stereoisomers of the spirooxindole products can be readily obtained simply by switching the configurations of the two chiral catalysts. Transformations of the chiral spirooxindoles delivered synthetically useful compounds. Importantly, those chiral spirooxindoles arrested mammalian cells in mitosis and exhibited potent antiproliferative activities against HeLa cells. Significantly, both absolute and relative configurations exert prominent effects on the bioactivities, underscoring great importance of catalytic asymmetric diastereodivergent synthesis beyond creating useful tools for the exploration of structure-activity relationships.

2.
J Chem Inf Model ; 63(21): 6727-6739, 2023 11 13.
Artigo em Inglês | MEDLINE | ID: mdl-37853630

RESUMO

Determining the optimal structures and clarifying the corresponding hierarchical evolution of transition metal clusters are of fundamental importance for their applications. The global optimization of clusters containing a large number of atoms, however, is a vastly challenging task encountered in many fields of physics and chemistry. In this work, a high-efficiency self-adaptive differential evolution with neighborhood search (SaNSDE) algorithm, which introduced an optimized cross-operation and an improved Basin Hopping module, was employed to search the lowest-energy structures of CoN, PtN, and FeN (N = 3-200) clusters. The performance of the SaNSDE algorithm was first evaluated by comparing our results with the parallel results collected in the Cambridge Cluster Database (CCD). Subsequently, different analytical methods were introduced to investigate the structural and energetic properties of these clusters systematically, and special attention was paid to elucidating the structural evolution with cluster size by exploring their overall shape, atomic arrangement, structural similarity, and growth pattern. By comparison with those results listed in the CCD, 13 lower-energy structures of FeN clusters were discovered. Moreover, our results reveal that the clusters of three metals had different magic numbers with superior stable structures, most of which possessed high symmetry. The structural evolution of Co, Pt, and Fe clusters could be, respectively, considered as predominantly closed-shell icosahedral, Marks decahedral, and disordered icosahedral-ring growth. Further, the formation of shell structures was discovered, and the clusters with hcp-, fcc-, and bcc-like configurations were ascertained. Nevertheless, the growth of the clusters was not simply atom-to-atom piling up on a given cluster despite gradual saturation of the coordination number toward its bulk limit. Our work identifies the general growth trends for such a wide region of cluster sizes, which would be unbearably expensive in first-principles calculations, and advances the development of global optimization algorithms for the structural prediction of clusters.


Assuntos
Algoritmos , Física , Proliferação de Células , Bases de Dados Factuais
3.
Phys Chem Chem Phys ; 25(10): 7436-7444, 2023 Mar 08.
Artigo em Inglês | MEDLINE | ID: mdl-36847782

RESUMO

As an emerging two-dimensional (2D) material, the TiB4 monolayer possesses intrinsic advantages in electrochemical applications owing to its graphene-like structure and metallic characteristics. In this work, we performed density functional calculations to investigate the electrochemical properties of the TiB4 monolayer as an anode material for Li/Na/K ion batteries and as an electrocatalyst for the nitrogen reduction reaction (NRR). Our investigation reveals that Li/Na/K ions could be steadily adsorbed on the TiB4 monolayer with moderate adsorption energies, and tended to diffuse along two adjacent C-sites with lower energy barriers (0.231/0.094/0.067 eV for Li/Na/K ions) compared to the currently reported transition-metal boride monolayers. Furthermore, a N2 molecule can be spontaneously captured by the TiB4 monolayer with a negative Gibbs free energy (-0.925 eV and -0.326 eV for end-on and side-on adsorptions, respectively), hence provoking a conversion into NH3 along the most efficient reaction pathway (i.e., N2* → N2H* → HNNH* → H2NNH* → H3NNH* → NH* → NH2* → NH3*). In the hydrogenation process, the TiB4 monolayer exhibits much higher catalytic activity for the NRR as compared with other electrocatalysts, which should be attributed to the spontaneous achievement (ΔG < 0) at all hydrogenation reaction steps except the potential-determining step. Moreover, the TiB4 monolayer exhibits higher selectivity toward the NRR than the hydrogen evolution reaction. Our work advances the mechanistic understanding on the electrochemical properties of the TiB4 monolayer as an anode material for metal-ion batteries and as a NRR electrocatalyst, and provides significant guidance for developing high-performance multifunctional 2D materials.

4.
Phys Chem Chem Phys ; 26(1): 628-634, 2023 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-38086646

RESUMO

Development of low-cost and high-efficiency oxygen reduction reaction (ORR) catalysts is of significance for fuel cells and metal-air batteries. Here, by regulating the N environment, a series of dual-atom embedded N5-coordinated graphene catalysts, namely M1M2N5 (M1, M2 = Fe, Co, and Ni), were constructed and systematically investigated by DFT calculations. The results reveal that all M1M2N5 configurations are structurally and thermodynamically stable. The strong adsorption of *OH hinders the proceeding of ORR on the surface of M1M2N5, but M1M2N5(OH2) complexes are formed to improve their catalytic activity. In particular, FeNiN5(OH2) and CoNiN5(OH2) with the overpotentials of 0.33 and 0.41 V, respectively, possess superior ORR catalytic activity. This superiority should be attributed to the reduced occupation of d-orbitals of Fe and Co atoms in the Fermi level and the apparent shift of dyz and dz2 orbitals of Ni atoms towards the Fermi level after adsorbing *OH, thus regulating the active sites and exhibiting appropriate adsorption strength for reaction intermediates. This work provides significant insight into the ORR mechanism and theoretical guidance for the discovery and design of low-cost and high-efficiency graphene-based dual-atom ORR catalysts.

5.
Phys Chem Chem Phys ; 25(27): 18266-18274, 2023 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-37395285

RESUMO

High-energy-density fuel cells and metal-air batteries are difficult to commercialize on a large scale mainly because of the sluggish oxygen reduction reaction (ORR) at the cathode. Hence, the development of high-efficiency and low-cost electrocatalysts as Pt substitutes for the ORR is of significance for the mass applications of these devices. In this work, we thoroughly investigated the structural and catalytic properties of NiPd co-doped N-coordinated graphene (denoted as NiPdN6-G) as an ORR electrocatalyst by using density-functional theory (DFT) calculations. Our results show that NiPdN6-G is structurally and thermodynamically stable. Furthermore, we explored all the possible paths and intermediates of the ORR, and identified the preferable active sites and the most stable adsorption configurations of the intermediates and transition states. In general, there are 15 possible reaction paths, of which 8 paths have lower energy barriers than pure Pt, and the maximum energy barrier and overpotential of the ORR for the optimal path are only 0.14 eV and 0.37 V, respectively. This work demonstrates that NiPdN6-G should be a promising candidate for substituting Pt and Pt-based catalysts for the ORR in energy conversion and storage devices.

6.
Cancer Control ; 29: 10732748221102820, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35609265

RESUMO

BACKGROUND: Vessels that encapsulate tumor cluster (VETC) is associated with poor prognosis in hepatocellular carcinoma (HCC). Vessels that encapsulate tumor cluster estimation before initial treatment is helpful for clinical doctors. We aimed to construct a novel predictive model for VETC, using preoperatively accessible clinical parameters and imagine features. METHODS: Totally, 365 HCC patients who received curative hepatectomy in the Sun Yat-Sen University Cancer Center from 2013 to 2014 were enrolled in this study. Vessels that encapsulate tumor cluster pattern was confirmed by immunochemistry staining. 243 were randomly assigned to the training cohort while the rest was assigned to the validation cohort. Independent predictive factors for VETC estimation were determined by univariate and multivariate logistic analysis. We further constructed a predictive nomogram for VETC in HCC. The performance of the nomogram was evaluated by C-index, receiver operating characteristic (ROC) curve, and calibration curve. Besides, the decision curve was plotted to evaluate the clinical usefulness. Ultimately, Kaplan-Meier survival curves were utilized to confirm the association between the nomogram and survival. RESULTS: Immunochemistry staining revealed VETC in 87 patients (23.8%). lymphocyte to monocyte ratio (>7.75, OR = 4.06), neutrophil (>7, OR = 4.48), AST to ALT ratio (AAR > .86, OR = 2.16), ALT to lymphocyte ratio index (BLRI > 21.73, OR = 2.57), alpha-fetoprotein (OR = 1.1), and tumor diameter (OR = 2.65) were independent predictive factors. The nomogram incorporating these predictive factors performed well with an area under the curve (AUC) of .746 and .707 in training and validation cohorts, respectively. Calibration curves indicated the predicted probabilities closely corresponded with the actual VETC status. Moreover, the decision curve proved our nomogram could provide clinical benefits with patients. Finally, low probability of VETC group had significantly longer recurrence free survival (RFS) and overall survival (OS) than the high probability of the VETC group (all P < .001). CONCLUSION: A novel predictive nomogram integrating clinical indicators and image characteristics shows strong predictive VETC performance and might provide standardized net clinical benefits.


Assuntos
Carcinoma Hepatocelular , Neoplasias Hepáticas , Carcinoma Hepatocelular/patologia , Hepatectomia , Humanos , Neoplasias Hepáticas/patologia , Nomogramas , Prognóstico , Estudos Retrospectivos
7.
J Chem Inf Model ; 62(10): 2398-2408, 2022 May 23.
Artigo em Inglês | MEDLINE | ID: mdl-35533292

RESUMO

Global optimization of multicomponent cluster structures is considerably time-consuming due to the existence of a vast number of isomers. In this work, we proposed an improved self-adaptive differential evolution with the neighborhood search (SaNSDE) algorithm and applied it to the global optimization of bimetallic cluster structures. The cross operation was optimized, and an improved basin hopping module was introduced to enhance the searching efficiency of SaNSDE optimization. Taking (PtNi)N (N = 38 or 55) bimetallic clusters as examples, their structures were predicted by using this algorithm. The traditional SaNSDE algorithm was carried out for comparison with the improved SaNSDE algorithm. For all the optimized clusters, the excess energy and the second difference of the energy were calculated to examine their relative stabilities. Meanwhile, the bond order parameters were adopted to quantitatively characterize the cluster structures. The results reveal that the improved SaNSDE algorithm possessed significantly higher searching capability and faster convergence speed than the traditional SaNSDE algorithm. Furthermore, the lowest-energy configurations of (PtNi)38 clusters could be classified as the truncated octahedral and disordered structures. In contrast, all the optimal (PtNi)55 clusters were approximately icosahedral. Our work fully demonstrates the high efficiency of the improved algorithm and advances the development of global optimization algorithms and the structural prediction of multicomponent clusters.

8.
Clin Endocrinol (Oxf) ; 95(3): 430-438, 2021 09.
Artigo em Inglês | MEDLINE | ID: mdl-34008210

RESUMO

OBJECTIVE: The characteristics of bone metabolism in T2DM are still controversial. This study aims to recognize bone turnover features in patients with newly diagnosed T2DM who have never been treated with anti-diabetic drugs and further explore the possible factors contributing to their impaired bone turnover. MATERIALS AND METHODS: An analytic sample of 88 patients with newly diagnosed T2DM and 152 non-diabetic control individuals were studied. All the participants were postmenopausal women. Demographics variables and clinical history were recorded. We measured lipid profile, glucose metabolism, bone turnover markers indices as well as their related hormones, serum calcium and phosphorus. Bone mineral density was detected by dual-energy X-ray absorptiometry. We compared the differences in bone turnover markers and their regulating hormones between two groups and further analysed the factors related to bone turnover in T2DM. RESULTS: Compared with the control group, patients with T2DM had a higher level of bone alkaline phosphatase (BALP), lower levels of procollagen type I intact N-terminal (P1NP), osteocalcin (OC) and parathyroid hormone (PTH). Multiple linear regression analysis showed that in patients with T2DM, HbA1c was negatively correlated with P1NP and OC. For patients without diabetes, HbA1c was negatively related to BALP and OC. CONCLUSIONS: Patients with newly diagnosed T2DM may have impaired osteoblastic maturation and bone formation, which may be mainly attributed to hyperglycaemia.


Assuntos
Diabetes Mellitus Tipo 2 , Pós-Menopausa , Biomarcadores , Densidade Óssea , Remodelação Óssea , Feminino , Humanos , Osteocalcina
9.
Chemistry ; 27(37): 9686-9693, 2021 Jul 02.
Artigo em Inglês | MEDLINE | ID: mdl-33871112

RESUMO

Single Mn atom on nitrogen-doped graphene (MnN4 -G) has exhibited good structural stability and high activity for the adsorption and dissociation of an O2 molecule, becoming a promising single-atom catalyst (SAC) candidate for oxygen reduction reaction (ORR). However, the catalytic activity of MnN4 -G for the ORR and the optimal reaction pathway remain obscure. In this work, density-functional theory calculations were employed to comprehensively investigate all the possible pathways and intermediate reactions of the ORR on MnN4 -G. The feasible active sites and the most stable adsorption configurations of the intermediates and transition states during the ORR were identified. Screened from all the possibilities, three optimal four-electron O2 hydrogenation pathways with an ultralow energy barrier of 0.13 eV were discovered that are energetically more favorable than direct O2 dissociation pathways. Analysis of the free energy diagram further verified the thermodynamical feasibility of the three pathways. Thus, MnN4 -G possesses superior ORR activity. This study provides a fundamental understanding of the design of highly efficient SACs for the ORR.

10.
Phys Chem Chem Phys ; 23(32): 17323-17328, 2021 Aug 28.
Artigo em Inglês | MEDLINE | ID: mdl-34346442

RESUMO

High-index faceted Pt nanoparticles with excellent electrocatalytic performances are promising to efficiently accelerate the oxygen reduction reactions in fuel cells. By adopting the hybrid grand canonical Monte Carlo reactive molecular dynamics (GCMC/RMD) simulations, we examined the oxygen adsorption on three 24-facet nanoparticles respectively enclosed by {310}, {311}, and {331} high-index facets. The site-dependent adsorption energies on each open-structure surface are calculated. Meanwhile, the adsorption ratios under various pressures and temperatures are presented. It is revealed that the adsorption capacity of these high-index faceted nanoparticles is considerably higher than that of the ones terminated by low-index facets. Moreover, oxygen adsorption exerts a significant impact on their thermodynamic behaviors.

11.
Angew Chem Int Ed Engl ; 60(6): 3268-3276, 2021 02 08.
Artigo em Inglês | MEDLINE | ID: mdl-33103824

RESUMO

Catalytic kinetic resolution (KR) and dynamic kinetic asymmetric transformation (DyKAT) are alternative and complementary avenues to access chiral stereoisomers of both starting materials and reaction products. The development of highly efficient chiral catalytic systems for kinetically controlled processes has therefore been one of the linchpins in asymmetric synthesis. N-heterocyclic carbene (NHC)/copper cooperative catalysis has enabled highly efficient KR and DyKAT of racemic N-tosylaziridines by [3+3] annulation with isatin-derived enals, leading to highly enantioenriched N-tosylaziridine derivatives (up to >99 % ee) and a large library of spirooxindole derivatives with high structural diversity and stereoselectivity (up to >95:5 d.r., >99 % ee). Mechanistic studies suggest that the NHC can bind reversibly to the copper catalyst without compromising its catalytic activity and regulate the catalytic activity of the copper complex to switch the chemoselection between KR and DyKAT.


Assuntos
Aziridinas/química , Cobre/química , Metano/análogos & derivados , Catálise , Reação de Cicloadição , Compostos Heterocíclicos/química , Isatina/química , Cinética , Metano/química , Oxindóis/química , Compostos de Espiro/síntese química , Compostos de Espiro/química , Estereoisomerismo
12.
Ann Surg Oncol ; 27(13): 5183-5190, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32418078

RESUMO

BACKGROUND: Microvascular invasion (MVI) is a risk factor for tumor recurrence after hepatectomy in hepatocellular carcinoma (HCC) patients. OBJECTIVE: This study aimed to investigate the efficacy and safety of postoperative adjuvant transarterial infusion chemotherapy (TAI) with the FOLFOX regimen for HCC patients with MVI. METHODS: In this prospective, phase III, randomized, open-label, controlled clinical trial, HCC patients with histologically confirmed MVI were randomly assigned (1:1) after hepatectomy to receive either one to two cycles of adjuvant TAI (AT group) or follow-up without any adjuvant treatment (FU group). The primary endpoint was disease-free survival (DFS), while secondary endpoints were overall survival (OS) and safety. RESULTS: Between June 2016 and April 2019, 127 patients were randomly assigned to the AT group (n = 63) or FU group (n = 64). Clinicopathological characteristics of the two groups were well-balanced. The 6-, 12-, and 18-month OS rates for the AT group were 100.0%, 97.7%, and 97.7%, respectively, and 94.5%, 89.6%, and 78.5% for the FU group, respectively. The 6-, 12-, and 18-month DFS rates for the AT and FU groups were 84.7%, 61.8%, and 58.7%, and 62.9%, 48.1%, and 38.6%, respectively. OS and DFS were significantly better in the AT group than in the FU group (p = 0.037 and 0.023, respectively). No patients in the AT group experienced grade 3 or more severe adverse events. CONCLUSIONS: Adjuvant TAI after hepatectomy may bring survival benefits to HCC patients with MVI. TRIAL REGISTRATION: Trial number: NCT03192618.


Assuntos
Carcinoma Hepatocelular , Neoplasias Hepáticas , Carcinoma Hepatocelular/tratamento farmacológico , Carcinoma Hepatocelular/cirurgia , Quimioterapia Adjuvante , Intervalo Livre de Doença , Hepatectomia , Humanos , Neoplasias Hepáticas/tratamento farmacológico , Neoplasias Hepáticas/cirurgia , Recidiva Local de Neoplasia/tratamento farmacológico , Estudos Prospectivos
13.
J Chem Inf Model ; 60(4): 2219-2228, 2020 04 27.
Artigo em Inglês | MEDLINE | ID: mdl-32203652

RESUMO

In general, searching the lowest-energy structures is considerably more time-consuming for bimetallic clusters than for monometallic ones because of the presence of an increasing number of homotops and geometrical isomers. In this article, a basin hopping genetic algorithm (BHGA), in which the genetic algorithm is implanted into the basin hopping (BH) method, is proposed to search the lowest-energy structures of 13-, 38-, and 55-atom PtCo bimetallic clusters. The results reveal that the proposed BHGA, as compared with the standard BH method, can markedly improve the convergent speed for global optimization and the possibility for finding the global minima on the potential energy surface. Meanwhile, referencing the monometallic structures in initializations may further raise the searching efficiency. For all the optimized clusters, both the excess energy and the second difference of the energy are calculated to examine their relative stabilities at different atomic ratios. The bond order parameter, the similarity function, and the shape factor are also adopted to quantitatively characterize the cluster structures. The results indicate that the 13- and the 55-atom systems tend to be icosahedral despite different degrees of lattice distortions. In contrast, for the 38-atom system, Pt10Co28, Pt11Co27, Pt17Co21, Pt19Co19, Pt20Co18, and Pt30Co8 tend to be disordered, while Pt21Co17 presents a defected face-centered cubic (fcc) structure, and the remaining clusters are perfect fcc. The methodology and results of this work have referential significance to the exploration of other alloy clusters.


Assuntos
Algoritmos , Isomerismo , Platina
14.
J Am Chem Soc ; 141(24): 9731-9738, 2019 06 19.
Artigo em Inglês | MEDLINE | ID: mdl-31136166

RESUMO

Highly functionalized 4-aminoindoles were synthesized via the three-component cross-coupling of o-iodoaniline, N-benzoyloxyamines, and norbornadiene. The Catellani and retro-Diels-Alder strategy was used in this domino process. o-Iodoaniline, with electron-donating and sterically hindered protecting groups, made the reaction selective toward o-C-H amination. On the basis of density functional theory calculations, the intramolecular Buchwald coupling of this reaction underwent a dearomatization and a 1,3-palladium migration process. The reasons for the control of the chemical selectivity by the protecting groups are given. Moreover, synthetic applications toward 4-piperazinylindole and a GOT1 inhibitor were realized.

15.
Cell Physiol Biochem ; 41(2): 742-754, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28214842

RESUMO

BACKGROUND/AIM: Accumulation of advanced glycation end products (AGEs) is a major cause of diabetes mellitus (DM) skin complications. Methylglyoxal (MGO), a reactive dicarbonyl compound, is a crucial intermediate of AGEs generation. N-acetyl-L-cysteine (NAC), an active ingredient of some medicines, can induce endogenous GSH and hydrogen sulfide generation, and set off a condensation reaction with MGO. However, there is rare evidence to show NAC can alleviate DM-induced skin injury through inhibition of AGEs generation or toxicity. The present study aimed to observe the effects of NAC on MGO-induced inflammatory injury and investigate the roles of AGEs and its receptor (RAGE) in NAC's dermal protection in human HaCaT keratinocytes. METHODS: The cells were exposed to MGO to simulate a high MGO status in diabetic blood or tissues. The content of AGEs in serum or cell medium was measured with ELISA. The protective effects of NAC against MGO-induce injury were evaluated by administration before MGO one hour, in virtue of cell viability, mitochondrial membrane potential, inflammation reaction, nuclear factor (NF)-κB activation, matrix metalloproteinase (MMP)-9 expression, as well as cellular behavioral function. RESULTS: We found the AGEs levels of patients with DM were elevated comparing with healthy volunteers. The in vitro AGEs generation was also able to be enhanced by the exposure of HaCaT cells to MGO, which reduced dose-dependently cellular viability, damaged mitochondrial function, triggered secretion of interleukin (IL)-6 and IL-8, activated NF-κB and upregulated MMP-9 expression. Furthermore, the exposure caused cellular adhesion and migration dysfunction, as well as collagen type I inhibition. Importantly, before the exposure to MGO, the preconditioning with NAC significantly attenuated MGO-induced AGEs generation, improved cellular viability and mitochondrial function, partially reversed the overexpression of proinflammatory factors and MMP-9, as well as the activation of NF-κB. Lastly, NAC blocked MGO-induced RAGE upregulation, and inhibition of RAGE with its neutralizing antibody significantly alleviated MGO-induced NF-κB activation, MMP-9 upregulation and inflammatory injury in HaCaT cells. CONCLUSION: The present work indicates the administration of NAC can prevent MGO-induced dermal inflammatory injury through inhibition of AGEs/RAGE signal, which may provide a basal support for the treatment of diabetic skin complications with NAC-containing medicines in the future.


Assuntos
Acetilcisteína/farmacologia , Produtos Finais de Glicação Avançada/análise , Substâncias Protetoras/farmacologia , Aldeído Pirúvico/farmacologia , Receptor para Produtos Finais de Glicação Avançada/análise , Regulação para Cima/efeitos dos fármacos , Idoso , Estudos de Casos e Controles , Adesão Celular/efeitos dos fármacos , Linhagem Celular , Movimento Celular/efeitos dos fármacos , Sobrevivência Celular/efeitos dos fármacos , Diabetes Mellitus Tipo 2/metabolismo , Diabetes Mellitus Tipo 2/patologia , Feminino , Produtos Finais de Glicação Avançada/sangue , Humanos , Interleucina-6/análise , Interleucina-8/análise , Masculino , Metaloproteinase 9 da Matriz/metabolismo , Potencial da Membrana Mitocondrial/efeitos dos fármacos , Pessoa de Meia-Idade , Mitocôndrias/efeitos dos fármacos , Mitocôndrias/metabolismo , Receptor para Produtos Finais de Glicação Avançada/sangue
16.
Phys Chem Chem Phys ; 19(47): 31796-31803, 2017 Dec 06.
Artigo em Inglês | MEDLINE | ID: mdl-29170767

RESUMO

A traditional doping technique plays an important role in the band structure engineering of two-dimensional nanostructures. Since electron interaction is changed by doping, the optical and electrochemical properties could also be significantly tuned. In this study, density functional theory calculations have been employed to explore the structural stability, and electronic and optical properties of B-doped phosphorene. The results show that all B-doped phosphorenes are stable with a relatively low binding energy. Of particular interest is that these B-doped systems exhibit an indirect band gap, which is distinct from the direct one of pure phosphorene. Despite the different concentrations and configurations of B dopants, such indirect band gaps are robust. The screened hybrid density functional HSE06 predicts that the band gap of B-doped phosphorene is slightly smaller than that of pure phosphorene. Spatial charge distributions at the valence band maximum (VBM) and the conduction band minimum (CBM) are analyzed to understand the features of an indirect band gap. By comparison with pure phosphorene, B-doped phosphorenes exhibit strong anisotropy and intensity of optical absorption. Moreover, B dopants could enhance the stability of Li adsorption on phosphorene with less sacrifice of the Li diffusion rate. Our results suggest that B-doping is an effective way of tuning the band gap, enhancing the intensity of optical absorption and improving the performances of Li adsorption, which could promote potential applications in novel optical devices and lithium-ion batteries.

17.
J Chem Phys ; 147(15): 152717, 2017 Oct 21.
Artigo em Inglês | MEDLINE | ID: mdl-29055341

RESUMO

Modern molecular-dynamics-based techniques are extremely powerful to investigate the dynamical evolution of materials. With the increase in sophistication of the simulation techniques and the ubiquity of massively parallel computing platforms, atomistic simulations now generate very large amounts of data, which have to be carefully analyzed in order to reveal key features of the underlying trajectories, including the nature and characteristics of the relevant reaction pathways. We show that clustering algorithms, such as the Perron Cluster Cluster Analysis, can provide reduced representations that greatly facilitate the interpretation of complex trajectories. To illustrate this point, clustering tools are used to identify the key kinetic steps in complex accelerated molecular dynamics trajectories exhibiting shape fluctuations in Pt nanoclusters. This analysis provides an easily interpretable coarse representation of the reaction pathways in terms of a handful of clusters, in contrast to the raw trajectory that contains thousands of unique states and tens of thousands of transitions.

19.
Phys Chem Chem Phys ; 18(14): 9847-54, 2016 Apr 14.
Artigo em Inglês | MEDLINE | ID: mdl-27003035

RESUMO

Atomic-scale understanding of structures and thermodynamic stability of core-shell nanoparticles is important for both their synthesis and application. In this study, we systematically investigated the structural stability and thermodynamic evolution of core-shell structured Pd-Ni nanoparticles by molecular dynamics simulations. It has been revealed that dislocations and stacking faults occur in the shell and their amounts are strongly dependent on the core/shell ratio. The presence of these defects lowers the structural and thermal stability of these nanoparticles, resulting in even lower melting points than both Pd and Ni monometallic nanoparticles. Furthermore, different melting behaviors have been disclosed in Pd-core/Ni-shell and Ni-core/Pd-shell nanoparticles. These diverse behaviors cause different relationships between the melting temperature and the amount of stacking faults. Our results display direct evidence for the tunable stability of bimetallic nanoparticles. This study provides a fundamental perspective on core-shell structured nanoparticles and has important implications for further tailoring their structural and thermodynamic stability by core/shell ratio or composition controlling.

20.
Phys Chem Chem Phys ; 18(4): 3097-102, 2016 Jan 28.
Artigo em Inglês | MEDLINE | ID: mdl-26741266

RESUMO

ZnO/GaN alloys have exceptional photocatalytic applications owing to their suitable band gaps corresponding to the range of visible light wavelength and thus have attracted extensive attention over the past few years. In this study, the structural stabilities and electronic properties of core/shell, biaxial, and super-lattice ZnO/GaN heterostructured nanowires have been investigated by means of first-principles calculations based on the density functional theory. The effects of the nanowire size, the GaN ratio, and strain have been explored. It is found that all studied heterostructured nanowires are less stable than pure ZnO nanowires, exhibiting larger sized wires with better structural stabilities and inversely proportional relationship between structural stability and the GaN ratio. Electronic band structures imply that all heterostructured nanowires are semiconductors with the band gaps strongly depending on the GaN ratios as well as mechanical strain. Particularly, for the biaxial and the super-lattice nanowires, their band gaps decrease firstly and then increase with the increasing GaN ratios. Electronic contributions to the valence band maximum (VBM) and the conduction band minimum (CBM) are discussed for exploiting the potential photocatalytic applications.

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