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1.
Curr Opin Cell Biol ; 12(3): 361-71, 2000 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10801463

RESUMO

Compositional analysis of nuclear pore complexes (NPCs) is nearing completion, and efforts are now focused on understanding how these protein machines work. Recent analysis of soluble transport factor interactions with NPC proteins reveals distinct and overlapping pathways for movement between the nucleus and cytoplasm. New fluorescence- and microscopy-based strategies have been used to monitor the pathway of NPC assembly and to reveal the dynamics of the NPC during transport.


Assuntos
Membrana Nuclear/metabolismo , Animais , Transporte Biológico Ativo , Núcleo Celular/metabolismo , Citoplasma/metabolismo , Humanos , Mitose , Membrana Nuclear/química , Proteínas Nucleares/metabolismo , Conformação Proteica , RNA Mensageiro/metabolismo , Saccharomyces cerevisiae/citologia , Saccharomyces cerevisiae/metabolismo
2.
Trends Cell Biol ; 4(10): 357-65, 1994 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-14731624

RESUMO

Nuclear pore complexes (NPCs) are enormous macromolecular structures that mediate the active exchange of proteins and RNPs between the nucleus and cytoplasm. Recent work has resulted in a windfall of identified NPC polypeptides, many with unique sequences. Several of the proteins have been shown to be part of extended cytoplasmic and nucleoplasmic NPC filaments. Biochemical, structural and genetic studies on NPC proteins are just beginning to allow an understanding of how they associate into a functional organelle.

3.
J Cell Biol ; 123(2): 275-84, 1993 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-7691829

RESUMO

NUP116 encodes a 116-kD yeast nuclear pore complex (NPC) protein that is not essential but its deletion (nup116 delta) slows cell growth at 23 degrees C and is lethal at 37 degrees C (Wente, S. R., M. P. Rout, and G. Blobel. 1992. J. Cell Biol. 119:705-723). Electron microscopic analysis of nup116 delta cells shifted to growth at 37 degrees C revealed striking perturbations of the nuclear envelope: a double membrane seal that was continuous with the inner and outer nuclear membranes had formed over the cytoplasmic face of the NPCs. Electron-dense material was observed accumulating between the cytoplasmic face of these NPCs and the membrane seal, resulting in "herniations" of the nuclear envelope around individual NPCs. In situ hybridization with poly(dT) probes showed the accumulation of polyadenylated RNA in the nuclei of arrested nup116 delta cells, sometimes in the form of punctate patches at the nuclear periphery. This is consistent with the electron microscopically observed accumulation of electron-dense material within the nuclear envelope herniations. We propose that nup116 delta NPCs remain competent for export, but that the formation of the membrane seals over the NPCs blocks nucleocytoplasmic traffic.


Assuntos
Citoplasma/fisiologia , Proteínas de Membrana/genética , Mutação , Membrana Nuclear/fisiologia , Membrana Nuclear/ultraestrutura , Complexo de Proteínas Formadoras de Poros Nucleares , Proteínas Nucleares/genética , Proteínas de Saccharomyces cerevisiae , Temperatura , Animais , Sobrevivência Celular/fisiologia , Citoplasma/ultraestrutura , Deleção de Genes , Hibridização In Situ , Proteínas de Membrana/fisiologia , Microscopia Eletrônica , Membrana Nuclear/química , Proteínas Nucleares/fisiologia , RNA/análise , RNA/genética , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/ultraestrutura
4.
J Cell Biol ; 125(5): 955-69, 1994 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-8195299

RESUMO

We have isolated and characterized the gene encoding a fourth yeast glycine-leucine-phenylalanine-glycine (GLFG) repeat nucleoporin with a calculated molecular mass of 145.3 kD, and therefore termed NUP145. The amino-terminal half of Nup145p is similar to two previously identified GLFG nucleoporins, Nup116p and Nup100p (Wente, S. R., M. P. Rout, and G. Blobel. 1992. J. Cell Biol. 119:705-723). A deletion/disruption in the amino-terminal half of NUP145 (nup145 delta N) had only a slight effect on cell growth at temperatures between 17 and 37 degrees C. However, immunofluorescence microscopy of nup145 delta N cells with antinucleoporin antibodies showed that the characteristic punctate nuclear staining normally seen in wild-type yeast cells was reduced, with the majority of the signal located in one or two intense spots at the nuclear periphery. Thin section electron microscopy analysis revealed the presence of what appeared to be successive herniations of the nuclear envelope forming grape-like structures at primarily one site on the nup145 delta N nuclei. These successive herniations contained numerous NPC-like structures, correlating to the limited bright patches of anti-nucleoporin immunofluorescence signal. In some cases the successive herniations were small. Occasionally, however, multi-lobulated nuclei were seen. We suggest that the ultrastructural phenotype of nup145 delta N cells is due to a defective interaction of nup145 delta N NPCs with the surrounding pore membrane domain of the nuclear envelope. We have also analyzed the synthetic lethal phenotypes among GLFG nucleoporin mutant alleles, and found that strains harboring nup116 and either nup100 or nup145 mutations were not viable. This, in combination with the morphological analysis, may reflect overlapping yet distinct roles for these three GLFG nucleoporins in NPC-nuclear envelope interactions.


Assuntos
Genes Fúngicos , Glicoproteínas de Membrana/química , Membrana Nuclear/química , Membrana Nuclear/ultraestrutura , Sequência de Aminoácidos , Sequência de Bases , Genes Letais , Dados de Sequência Molecular , Mutagênese Insercional , Complexo de Proteínas Formadoras de Poros Nucleares , Saccharomyces cerevisiae
5.
J Cell Biol ; 136(6): 1185-99, 1997 Mar 24.
Artigo em Inglês | MEDLINE | ID: mdl-9087436

RESUMO

While much is known about the role of nuclear pore complexes (NPCs) in nucleocytoplasmic transport, the mechanism of NPC assembly into pores formed through the double lipid bilayer of the nuclear envelope is not well defined. To investigate the dynamics of NPCs, we developed a live-cell assay in the yeast Saccharomyces cerevisiae. The nucleoporin Nup49p was fused to the green fluorescent protein (GFP) of Aequorea victoria and expressed in nup49 null haploid yeast cells. When the GFP-Nup49p donor cell was mated with a recipient cell harboring only unlabeled Nup49p, the nuclei fused as a consequence of the normal mating process. By monitoring the distribution of the GFP-Nup49p, we could assess whether NPCs were able to move from the donor section of the nuclear envelope to that of the recipient nucleus. We observed that fluorescent NPCs moved and encircled the entire nucleus within 25 min after fusion. When assays were done in mutant kar1-1 strains, where nuclear fusion does not occur, GFP-Nup49p appearance in the recipient nucleus occurred at a very slow rate, presumably due to new NPC biogenesis or to exchange of GFP-Nup49p into existing recipient NPCs. Interestingly, in a number of existing mutant strains, NPCs are clustered together at permissive growth temperatures. This has been explained with two different hypotheses: by movement of NPCs through the double nuclear membranes with subsequent clustering at a central location; or, alternatively, by assembly of all NPCs at a central location (such as the spindle pole body) with NPCs in mutant cells unable to move away from this point. Using the GFP-Nup49p system with a mutant in the NPC-associated factor Gle2p that exhibits formation of NPC clusters only at 37 degrees C, it was possible to distinguish between these two models for NPC dynamics. GFP-Nup49p-labeled NPCs, assembled at 23 degrees C, moved into clusters when the cells were shifted to growth at 37 degrees C. These results indicate that NPCs can move through the double nuclear membranes and, moreover, can do so to form NPC clusters in mutant strains. Such clusters may result by releasing NPCs from a nuclear tether, or by disappearance of a protein that normally prevents pore aggregation. This system represents a novel approach for identifying regulators of NPC assembly and movement in the future.


Assuntos
Saccharomyces cerevisiae/metabolismo , Transporte Biológico , Proteínas Fúngicas/metabolismo , Proteínas de Fluorescência Verde , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Substâncias Macromoleculares , Fusão de Membrana , Movimento , Membrana Nuclear/metabolismo , Proteínas Nucleares/metabolismo , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Reprodução , Saccharomyces cerevisiae/citologia
6.
J Cell Biol ; 119(4): 705-23, 1992 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-1385442

RESUMO

We have identified a novel family of yeast nuclear pore complex proteins. Three individual members of this family, NUP49, NUP100, and NUP116, have been isolated and then characterized by a combination of molecular genetics and immunolocalization. Employing immunoelectron and immunofluorescence microscopy on yeast cells, we found that the binding of a polyspecific monoclonal antibody recognizing this family was predominantly at the nuclear pore complexes. Furthermore, the tagging of NUP49 with a unique epitope enabled the immunolocalization of this protein to the nuclear pore complex by both fluorescence and electron microscopy. DNA sequence analysis has shown that the amino-terminal regions of NUP49, NUP100, and NUP116 share repeated "GLFG" motifs separated from each other by glutamine, asparagine, serine and threonine rich spacers. All three proteins lack a repetitive domain found in the two precisely described yeast nuclear pore complex proteins. Only NUP49 is essential for cell viability. NUP116-deficient cells grow very slowly and are temperature sensitive, whereas the lack of NUP100 has no detectable phenotype. NUP100 and NUP116 are homologous over their entire lengths. Interestingly, NUP100 and NUP116 are both flanked by a histidine tRNA gene and a transposon element suggesting that they may have arisen by gene duplication. We propose that subfamilies of pore complex proteins can be defined by their characteristic combinations of different modular domains.


Assuntos
Proteínas Fúngicas/química , Proteínas de Membrana/química , Complexo de Proteínas Formadoras de Poros Nucleares , Proteínas Nucleares/química , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/química , Sequência de Aminoácidos , Anticorpos Monoclonais , Sequência de Bases , Elementos de DNA Transponíveis , DNA Fúngico/química , DNA Fúngico/genética , Epitopos , Proteínas Fúngicas/genética , Proteínas Fúngicas/isolamento & purificação , Genes Fúngicos , Proteínas de Membrana/genética , Proteínas de Membrana/isolamento & purificação , Microscopia de Fluorescência , Microscopia Imunoeletrônica , Dados de Sequência Molecular , Membrana Nuclear/química , Proteínas Nucleares/genética , Proteínas Nucleares/isolamento & purificação , Estrutura Secundária de Proteína , RNA de Transferência de Histidina/genética , Saccharomyces cerevisiae/genética
7.
J Cell Biol ; 137(4): 797-811, 1997 May 19.
Artigo em Inglês | MEDLINE | ID: mdl-9151683

RESUMO

During nuclear import, cytosolic transport factors move through the nuclear pore complex (NPC) to the nuclear compartment. Kap95p is required during import for docking the nuclear localization signal-receptor and ligand to the NPC. Recycling of this factor back to the cytoplasm is necessary for continued rounds of import; however, the mechanism for Kap95p recycling is unknown. We have determined that recycling of Kap95p requires a nuclear export signal (NES). A region containing the NES in Kap95p was sufficient to mediate active nuclear export in a microinjection assay. Moreover, the NES was necessary for function. Mutation of the NES in Kap95p resulted in a temperaturesensitive import mutant, and immunofluorescence microscopy experiments showed that the mutated Kap95p was not recycled but instead localized in the nucleus and at the nuclear envelope. Srp1p, the yeast nuclear localization signal-receptor, also accumulated in the nuclei of the arrested kap95 mutant cells. Wild-type and NES-mutated Kap95p both bound Gsp1p (the yeast Ran/TC4 homologue), Srp1p, and the FXFG repeat region of the nucleoporin Nup1p. In contrast, the NES mutation abolished Kap95p interaction with the GLFG repeat regions from the nucleoporins Nup116p and Nup100p. In vivo interaction was demonstrated by isolation of Kap95p from yeast nuclear lysates in either protein A-tagged Nup116p or protein A-tagged Nup100p complexes. The protein A-tagged Nup116p complex also specifically contained Gle2p. These results support a model in which a step in the recycling of Kap95p is mediated by interaction of an NES with GLFG regions. Analysis of genetic interactions suggests Nup116p has a primary role in Kap95p recycling, with Nup100p compensating in the absence of Nup116p. This finding highlights an important role for a subfamily of GLFG nucleoporins in nuclear export processes.


Assuntos
Complexo de Proteínas Formadoras de Poros Nucleares , Proteínas Nucleares/metabolismo , Proteínas de Saccharomyces cerevisiae , Sequência de Aminoácidos , Transporte Biológico , Núcleo Celular/metabolismo , Proteínas Fúngicas/metabolismo , Proteínas de Membrana/metabolismo , Microscopia Confocal , Ligação Proteica , Saccharomyces cerevisiae , Relação Estrutura-Atividade , beta Carioferinas
8.
J Cell Biol ; 131(6 Pt 2): 1699-713, 1995 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-8557738

RESUMO

Nup116p is a member of a family of five yeast nuclear pore complex (NPC) proteins that share an amino terminal region of repetitive tetrapeptide "GLFG" motifs. Previous experiments characterized the unique morphological perturbations that occur in a nup116 null mutant: temperature-sensitive formation of nuclear envelope seals over the cytoplasmic face of the NPC (Wente, S. R., and G. Blobel. 1993. J. Cell Biol. 123:275-284). Three approaches have been taken to dissect the structural basis for Nup116p's role in NPC function. First, deletion mutagenesis analysis of NUP116 revealed that the GLFG region was required for NPC function. This was not true for the other four yeast GLFG family members (Nup49p, Nup57p, Nup100p, and Nup145p). Moreover, deletion of either half of Nup116p's GLFG repeats or replacement of Nup116p's GLFG region with either Nup100p's GLFG region or Nsp1p's FXFG repetitive region abolishes the function of Nup116p. At a semipermissive growth temperature, the cells lacking Nup116p's GLFG region displayed a diminished capacity for nuclear import. Second, overexpression of Nup116p's GLFG region severely inhibited cell growth, rapidly blocked polyadenylated-RNA export, and fragmented the nucleolus. Although it inhibited nuclear export, the overexpressed GLFG region appeared predominantly localized in the cytoplasm and NPC/nuclear envelope structure was not perturbed in thin section electron micrographs. Finally, using biochemical and two-hybrid analysis, an interaction was characterized between Nup116p's GLFG region and Kap95p, an essential yeast homologue of the vertebrate nuclear import factor p97/Imp90/karopherin beta. These data show that Nup116p's GLFG region has an essential role in mediating nuclear transport.


Assuntos
Proteínas Fúngicas/metabolismo , Proteínas de Membrana/metabolismo , Complexo de Proteínas Formadoras de Poros Nucleares , Proteínas Nucleares/metabolismo , Proteínas de Saccharomyces cerevisiae , Leveduras/metabolismo , Sequência de Aminoácidos , Sequência de Bases , Transporte Biológico/genética , Divisão Celular/fisiologia , Núcleo Celular/genética , Núcleo Celular/metabolismo , Sobrevivência Celular/genética , Proteínas Fúngicas/genética , Galactose/farmacologia , Deleção de Genes , Expressão Gênica/fisiologia , Proteínas de Membrana/genética , Microscopia Eletrônica , Dados de Sequência Molecular , Proteínas Nucleares/genética , Fenótipo , RNA Mensageiro/metabolismo , Rafinose/farmacologia , Sequências Repetitivas de Ácido Nucleico/genética , Leveduras/citologia , Leveduras/ultraestrutura
9.
Science ; 288(5470): 1374-7, 2000 May 26.
Artigo em Inglês | MEDLINE | ID: mdl-10827939

RESUMO

Nuclear pore complexes (NPCs) form the site for entry and exit from the nucleus. A convergence of studies have defined the physical framework for the nuclear transport mechanism. This includes definition of the soluble transport machinery required for protein and RNA movement, x-ray structure analysis of transport factors, definitive compositional analysis of yeast NPCs, and documentation of the relative steady state arrangement of NPC components within the portal. With this information, researchers are now in the exciting position to examine the dynamic interplay between shuttling transport factors and the static pore complex.


Assuntos
Núcleo Celular/metabolismo , Membrana Nuclear/química , Membrana Nuclear/metabolismo , Sequência de Aminoácidos , Transporte Biológico Ativo , Proteínas de Transporte/química , Proteínas de Transporte/metabolismo , Núcleo Celular/química , Núcleo Celular/ultraestrutura , Citoplasma/metabolismo , Proteínas de Membrana/química , Proteínas de Membrana/metabolismo , Modelos Biológicos , Membrana Nuclear/ultraestrutura , Sinais de Localização Nuclear , Proteínas Nucleares/química , Proteínas Nucleares/metabolismo , Proteínas/metabolismo , RNA/metabolismo , Saccharomyces cerevisiae/química , Saccharomyces cerevisiae/metabolismo
10.
Science ; 287(5460): 2026-9, 2000 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-10720331

RESUMO

Phospholipase C and two inositol polyphosphate (IP) kinases constitute a signaling pathway that regulates nuclear messenger RNA export through production of inositol hexakisphosphate (IP6). The inositol 1,4,5-trisphosphate kinase of this pathway in Saccharomyces cerevisiae, designated Ipk2, was found to be identical to Arg82, a regulator of the transcriptional complex ArgR-Mcm1. Synthesis of inositol 1,4,5,6-tetrakisphosphate, but not IP6, was required for gene regulation through ArgR-Mcm1. Thus, the phospholipase C pathway produces multiple IP messengers that modulate distinct nuclear processes. The results reveal a direct mechanism by which activation of IP signaling may control gene expression.


Assuntos
Núcleo Celular/metabolismo , Regulação Fúngica da Expressão Gênica , Fosfatos de Inositol/metabolismo , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , Saccharomyces cerevisiae/genética , Transcrição Gênica , Sequência de Aminoácidos , Arginina/metabolismo , Núcleo Celular/enzimologia , Proteínas de Ligação a DNA/metabolismo , Inositol 1,4,5-Trifosfato/metabolismo , Proteína 1 de Manutenção de Minicromossomo , Dados de Sequência Molecular , Monoéster Fosfórico Hidrolases/metabolismo , Fosforilação , Fosfotransferases (Aceptor do Grupo Álcool)/química , Ácido Fítico/metabolismo , Saccharomyces cerevisiae/enzimologia , Transdução de Sinais , Fatores de Transcrição/metabolismo , Fosfolipases Tipo C/metabolismo
11.
Science ; 285(5424): 96-100, 1999 Jul 02.
Artigo em Inglês | MEDLINE | ID: mdl-10390371

RESUMO

In order to identify additional factors required for nuclear export of messenger RNA, a genetic screen was conducted with a yeast mutant deficient in a factor Gle1p, which associates with the nuclear pore complex (NPC). The three genes identified encode phospholipase C and two potential inositol polyphosphate kinases. Together, these constitute a signaling pathway from phosphatidylinositol 4, 5-bisphosphate to inositol hexakisphosphate (IP6). The common downstream effects of mutations in each component were deficiencies in IP6 synthesis and messenger RNA export, indicating a role for IP6 in GLE1 function and messenger RNA export.


Assuntos
Proteínas de Transporte/metabolismo , Membrana Nuclear/metabolismo , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , RNA Mensageiro/metabolismo , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/metabolismo , Fosfolipases Tipo C/metabolismo , Transporte Biológico , Proteínas de Transporte/genética , Genes Fúngicos , Teste de Complementação Genética , Fosfatos de Inositol/metabolismo , Mutação , Complexo de Proteínas Formadoras de Poros Nucleares , Fosfotransferases (Aceptor do Grupo Álcool)/genética , Ácido Fítico/metabolismo , RNA Fúngico/metabolismo , Saccharomyces cerevisiae/genética , Transdução de Sinais
12.
Mol Cell Biol ; 20(15): 5736-48, 2000 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-10891509

RESUMO

The yeast Saccharomyces cerevisiae nucleoporin Nup116p serves as a docking site for both nuclear import and export factors. However, the mechanism for assembling Nup116p into the nuclear pore complex (NPC) has not been resolved. By conducting a two-hybrid screen with the carboxy (C)-terminal Nup116p region as bait, we identified Nup82p. The predicted coiled-coil region of Nup82p was not required for Nup116p interaction, making the binding requirements distinct from those for the Nsp1p-Nup82p-Nup159p subcomplex (N. Belgareh, C. Snay-Hodge, F. Pasteau, S. Dagher, C. N. Cole, and V. Doye, Mol. Biol. Cell 9:3475-3492, 1998). Immunoprecipitation experiments using yeast cell lysates resulted in the coisolation of a Nup116p-Nup82p subcomplex. Although the absence of Nup116p had no effect on the NPC localization of Nup82p, overexpression of C-terminal Nup116p in a nup116 null mutant resulted in Nup82p mislocalization. Moreover, NPC localization of Nup116p was specifically diminished in a nup82-Delta108 mutant after growth at 37 degrees C. Immunoelectron microscopy analysis showed Nup116p was localized on both the cytoplasmic and nuclear NPC faces. Its distribution was asymmetric with the majority at the cytoplasmic face. Taken together, these results suggest that Nup82p and Nup116p interact at the cytoplasmic NPC face, with nucleoplasmic Nup116p localization utilizing novel binding partners.


Assuntos
Núcleo Celular/metabolismo , Proteínas Fúngicas/metabolismo , Proteínas de Membrana/metabolismo , Complexo de Proteínas Formadoras de Poros Nucleares , Proteínas Nucleares/metabolismo , Proteínas de Saccharomyces cerevisiae , Núcleo Celular/ultraestrutura , Citoplasma/metabolismo , Imunofluorescência , Proteínas de Fluorescência Verde , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Proteínas de Membrana/genética , Mutação , Proteínas Nucleares/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Temperatura , Técnicas do Sistema de Duplo-Híbrido
13.
Mol Biol Cell ; 9(9): 2439-61, 1998 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-9725905

RESUMO

Nuclear pore complexes (NPCs) are large proteinaceous portals for exchanging macromolecules between the nucleus and the cytoplasm. Revealing how this transport apparatus is assembled will be critical for understanding the nuclear transport mechanism. To address this issue and to identify factors that regulate NPC formation and dynamics, a novel fluorescence-based strategy was used. This approach is based on the functional tagging of NPC proteins with the green fluorescent protein (GFP), and the hypothesis that NPC assembly mutants will have distinct GFP-NPC signals as compared with wild-type (wt) cells. By fluorescence-activated cell sorting for cells with low GFP signal from a population of mutagenized cells expressing GFP-Nup49p, three complementation groups were identified: two correspond to mutant nup120 and gle2 alleles that result in clusters of NPCs. Interestingly, a third group was a novel temperature-sensitive allele of nup57. The lowered GFP-Nup49p incorporation in the nup57-E17 cells resulted in a decreased fluorescence level, which was due in part to a sharply diminished interaction between the carboxy-terminal truncated nup57pE17 and wt Nup49p. Interestingly, the nup57-E17 mutant also affected the incorporation of a specific subset of other nucleoporins into the NPC. Decreased levels of NPC-associated Nsp1p and Nup116p were observed. In contrast, the localizations of Nic96p, Nup82p, Nup159p, Nup145p, and Pom152p were not markedly diminished. Coincidentally, nuclear import capacity was inhibited. Taken together, the identification of such mutants with specific perturbations of NPC structure validates this fluorescence-based strategy as a powerful approach for providing insight into the mechanism of NPC biogenesis.


Assuntos
Proteínas Luminescentes , Mutação , Complexo de Proteínas Formadoras de Poros Nucleares , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Alelos , Fluorescência , Proteínas de Fluorescência Verde , Proteínas de Membrana/metabolismo , Membrana Nuclear/fisiologia , Proteínas Nucleares/metabolismo , Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/fisiologia
14.
Mol Biol Cell ; 7(12): 1921-37, 1996 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-8970155

RESUMO

To identify and characterize novel factors required for nuclear transport, a genetic screen was conducted in the yeast Saccharomyces cerevisiae. Mutations that were lethal in combination with a null allele of the gene encoding the nucleoporin Nup100p were isolated using a colony-sectoring assay. Three complementation groups of gle (for GLFG lethal) mutants were identified. In this report, the characterization of GLE2 is detailed. GLE2 encodes a 40.5-kDa polypeptide with striking similarity to that of Schizosaccharomyces pombe RAE1. In indirect immunofluorescence and nuclear pore complex fractionation experiments, Gle2p was associated with nuclear pore complexes. Mutated alleles of GLE2 displayed blockage of polyadenylated RNA export; however, nuclear protein import was not apparently diminished. Immunofluorescence and thin-section electron microscopic analysis revealed that the nuclear pore complex and nuclear envelope structure was grossly perturbed in gle2 mutants. Because the clusters of herniated pore complexes appeared subsequent to the export block, the structural perturbations were likely indirect consequences of the export phenotype. Interestingly, a two-hybrid interaction was detected between Gle2p and Srp1p, the nuclear localization signal receptor, as well as Rip1p, a nuclear export signal-interacting protein. We propose that Gle2p has a novel role in mediating nuclear transport.


Assuntos
Proteínas Fúngicas/genética , Proteínas Ativadoras de GTPase , Regulação Fúngica da Expressão Gênica , Proteínas Associadas à Matriz Nuclear , Complexo de Proteínas Formadoras de Poros Nucleares , Proteínas de Transporte Nucleocitoplasmático , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/genética , Proteínas de Schizosaccharomyces pombe , Sequência de Aminoácidos , Genes Letais , Proteínas de Membrana/genética , Dados de Sequência Molecular , Mutagênese , Membrana Nuclear/metabolismo , Proteínas Nucleares/genética , Peptídeos/genética , Poli A/metabolismo , Proteínas/genética , Proteínas de Ligação a RNA/genética , Schizosaccharomyces/metabolismo , Homologia de Sequência de Aminoácidos , alfa Carioferinas
15.
Mol Biol Cell ; 9(2): 355-73, 1998 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-9450961

RESUMO

Integral membrane proteins are predicted to play key roles in the biogenesis and function of nuclear pore complexes (NPCs). Revealing how the transport apparatus is assembled will be critical for understanding the mechanism of nucleocytoplasmic transport. We observed that expression of the carboxyl-terminal 200 amino acids of the nucleoporin Nup116p had no effect on wild-type yeast cells, but it rendered the nup116 null strain inviable at all temperatures and coincidentally resulted in the formation of nuclear membrane herniations at 23 degrees C. To identify factors related to NPC function, a genetic screen for high-copy suppressors of this lethal nup116-C phenotype was conducted. One gene (designated SNL1 for suppressor of nup116-C lethal) was identified whose expression was necessary and sufficient for rescuing growth. Snl1p has a predicted molecular mass of 18.3 kDa, a putative transmembrane domain, and limited sequence similarity to Pom152p, the only previously identified yeast NPC-associated integral membrane protein. By both indirect immunofluorescence microscopy and subcellular fractionation studies, Snl1p was localized to both the nuclear envelope and the endoplasmic reticulum. Membrane extraction and topology assays suggested that Snl1p was an integral membrane protein, with its carboxyl-terminal region exposed to the cytosol. With regard to genetic specificity, the nup116-C lethality was also suppressed by high-copy GLE2 and NIC96. Moreover, high-copy SNL1 suppressed the temperature sensitivity of gle2-1 and nic96-G3 mutant cells. The nic96-G3 allele was identified in a synthetic lethal genetic screen with a null allele of the closely related nucleoporin nup100. Gle2p physically associated with Nup116p in vitro, and the interaction required the N-terminal region of Nup116p. Therefore, genetic links between the role of Snl1p and at least three NPC-associated proteins were established. We suggest that Snl1p plays a stabilizing role in NPC structure and function.


Assuntos
Proteínas de Membrana/genética , Proteínas de Membrana/fisiologia , Complexo de Proteínas Formadoras de Poros Nucleares , Proteínas Nucleares/genética , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/citologia , Sequência de Aminoácidos , Clonagem Molecular , Retículo Endoplasmático/química , Proteínas Fúngicas/metabolismo , Genes Fúngicos/genética , Genes Letais/genética , Genes Supressores/genética , Glicoproteínas de Membrana/análise , Glicoproteínas de Membrana/genética , Proteínas de Membrana/análise , Proteínas de Membrana/metabolismo , Chaperonas Moleculares , Dados de Sequência Molecular , Membrana Nuclear/química , Membrana Nuclear/ultraestrutura , Poro Nuclear , Proteínas Nucleares/análise , Proteínas Nucleares/metabolismo , Fenótipo , Saccharomyces cerevisiae/genética , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos
16.
Essays Biochem ; 36: 89-103, 2000.
Artigo em Inglês | MEDLINE | ID: mdl-12471905

RESUMO

Proteins transported into and out of the nucleus require amino acid motifs called NLSs and NESs, respectively. The amino acid sequences of these signals vary considerably. A superfamily of transport receptors has been identified and each member contains three transport-related domains. Transport receptors bind to the signal sequences, either directly or through adapter proteins, to promote nucleocytoplasmic transport. The diversity of signals, receptors and adapter proteins suggests that there are many pathways for nuclear entry or exit. The direction of transport (into or out of the nucleus) is regulated in part by the small GTPase Ran as well as by intrinsic substrate motifs.


Assuntos
Núcleo Celular/metabolismo , Receptores Citoplasmáticos e Nucleares/metabolismo , Transdução de Sinais/fisiologia , Transporte Ativo do Núcleo Celular , Animais , Citoplasma/metabolismo , GTP Fosfo-Hidrolases/metabolismo , Guanosina Trifosfato/metabolismo , Humanos
17.
Diabetes Care ; 13(3): 280-7, 1990 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-2155093

RESUMO

Protein tyrosine kinase activity found in the beta-subunit of the insulin receptor provides a mechanism by which insulin binding on the outside of the cell transmits its signal across the plasma membrane into the cytosol. The autophosphorylation of the insulin receptor on tyrosyl residues activates the intrinsic tyrosine kinase of the receptor, rendering its ligand independent. Evidence suggests that phosphorylation of tyrosyl residues 1146, 1150, and 1151 in the kinase domain of the beta-subunit play a role in activation. Point mutations in the cytoplasmic portion of the beta-subunit confirm the above suggestions and indicate that additional sites are important for receptor function. We present methodology for overproducing the cytoplasmic domain of the receptor in the Baculovirus expression system. The protein, produced in insect cells and larvae, is soluble and fully active on autophosphorylation. Like the intact receptor, its autophosphorylation is intramolecular. Because greater than or equal to 10 mg of pure protein can be isolated from 10(10) insect cells infected with the recombinant Baculovirus encoding the human insulin-receptor kinase domain, sufficient enzyme is available for various studies, including physicochemical analysis. Isolation of beta-subunit defects found in the receptors of patients with various forms of diabetes mellitus also implicates the insulin-receptor kinase in insulin action. Finally, a potential model system for the genetic analysis of the insulin-insulin-receptor system with Drosophila melanogaster is noted. Conservation of the deduced amino acid sequence for both alpha- and beta-subunit sequences between humans and insects highlights the significance of this manner of signal transduction throughout nearly 1 billion years of evolution.


Assuntos
Proteínas Tirosina Quinases/metabolismo , Receptor de Insulina/metabolismo , Sequência de Aminoácidos , Animais , Humanos , Insulina/fisiologia , Dados de Sequência Molecular , Proteínas Tirosina Quinases/genética , Receptor de Insulina/genética
18.
J Biol Chem ; 266(31): 20833-9, 1991 Nov 05.
Artigo em Inglês | MEDLINE | ID: mdl-1939134

RESUMO

Site-directed mutagenesis was used to determine how the allosteric properties of aspartate transcarbamoylase (ATCase) are affected by amino acid replacements in the nucleotide binding region of the regulatory polypeptide chains. Amino acid substitutions were made for both Lys-60 and Lys-94 in the regulatory chain since those residues have been implicated by x-ray diffraction studies, chemical modification experiments, and site-directed mutagenesis as playing a role in binding CTP and ATP. Lys-60 was replaced by His, Arg, Gln, and Ala, and Lys-94 was changed to His. These mutant forms of ATCase exhibit bewildering changes in the allosteric properties compared to the wild-type enzyme as well as altered affinities for the nucleotide effectors. The enzyme containing His-60 lacks both homotropic and heterotropic effects and exhibits no detectable binding of nucleotides. In contrast, the holoenzymes containing either Gln-60 or Arg-60 retain both homotropic and heterotropic effects. Replacement of Lys-60 by Ala yields a derivative exhibiting altered heterotropic effects involving insensitivity to CTP and activation by ATP. The mutant enzyme containing His-94 in place of Lys exhibits cooperativity with reduced affinity for nucleotides. The multiple substitutions at Lys-60 in the nucleotide binding region of the regulatory chains of ATCase demonstrate that different amino acids in the same location can alter indirectly the delicate balance of interactions responsible for the allosteric properties of ATCase. The studies show that it is hazardous and frequently unwarranted from single amino acid replacements of a specific residue to attribute to that residue the properties observed for the wild-type enzyme.


Assuntos
Aspartato Carbamoiltransferase/metabolismo , Trifosfato de Adenosina/metabolismo , Regulação Alostérica , Aspartato Carbamoiltransferase/química , Ácido Aspártico/análogos & derivados , Ácido Aspártico/metabolismo , Ácido Aspártico/farmacologia , Sítios de Ligação , Carbamoil-Fosfato/metabolismo , Citidina Trifosfato/metabolismo , Análise Mutacional de DNA , Histidina/metabolismo , Lisina/metabolismo , Ácido Fosfonoacéticos/análogos & derivados , Ácido Fosfonoacéticos/farmacologia , Relação Estrutura-Atividade
19.
Proc Natl Acad Sci U S A ; 84(1): 31-5, 1987 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-3540957

RESUMO

Many oligomeric enzymes are functional only in the assembled form, and it is often difficult to determine unambiguously why monomers are inactive. In some cases individual monomers cannot fold into stable correct ("native") conformations without contributions from interchain interactions. For other oligomers, catalysis requires the contributions of amino acid residues at the interface between adjacent polypeptide chains, and monomers are inactive because they cannot form complete active sites. A test for the presence of shared sites was devised that is based on the formation of active hybrid oligomers from appropriate inactive parental mutants produced by site-directed mutagenesis. This approach was applied in a study of the catalytic trimer of aspartate transcarbamoylase (aspartate carbamoyltransferase, EC 2.1.3.2) from Escherichia coli, using three mutants, in which Ser-52 was replaced by His, Lys-84 by Gln, or His-134 by Ala. Hybrid trimers formed from the virtually inactive Ser and Lys mutants were 10(5) more active than the parental proteins, and the specific activities of each hybrid were about 33% that of the wild-type trimer, as expected for the scheme based on shared sites. Hybrids from the His and Lys mutants had comparable specific activities. Moreover, one hybrid with approximately 33% activity had one high-affinity binding site for a bisubstrate analog as compared to about three for wild-type trimer. As a further test, hybrids were also formed from wild-type and double-mutant (Lys-84----Gln and His-134----Ala) trimers. The hybrid containing two chains with the double mutation and one wild-type chain had very little activity, and that composed of one double mutant and two wild-type chains had 32% the specific activity of wild-type trimers. This negative complementation experiment is in quantitative accord with the scheme based on shared sites at or near the interfaces between adjacent chains. The techniques used to demonstrate shared active sites in the catalytic subunits of aspartate transcarbamoylase can be applied generally to various types of oligomers (dimers, tetramers, etc.) to determine whether the participation of amino acid residues from adjoining chains is essential for forming active sites in oligomeric enzymes.


Assuntos
Aspartato Carbamoiltransferase/metabolismo , Enzimas/metabolismo , Alelos , Aspartato Carbamoiltransferase/genética , Sítios de Ligação , Genes , Genes Bacterianos , Cinética , Substâncias Macromoleculares , Modelos Moleculares , Mutação , Conformação Proteica , Salmonella typhimurium/enzimologia , Salmonella typhimurium/genética
20.
Nature ; 383(6598): 357-60, 1996 Sep 26.
Artigo em Inglês | MEDLINE | ID: mdl-8848052

RESUMO

The Rev protein of human immunodeficiency virus type 1 (HIV-1) mediates the translocation of viral messenger RNAs from the nucleus to the cytoplasm. In yeast, Rev can mediate the nuclear export of Rev response-element-containing RNAs. The export of Rev itself proceeds through the nuclear pore complex and requires a nuclear export signal (NES) and interaction with a cellular cofactor, the protein Rip1. Endogenous RNA export mediators that interact with Rip1 and harbour NESs are thought to exist but have yet to be identified. Here we report the characterization of a new and essential yeast protein, Gle1, which contains an NES and has a relative molecular mass of 62,000. Mutation of the NES in Gle1 prevents export of polyadenylated RNA from the nucleus. Gle1 interacts with Rip1 and the nucleoporin Nup100 and is localized predominantly at nuclear pore complexes. These properties indicate that Gle1 is an RNA-export factor and that Rev may mediate viral RNA export by mimicking the function of Gle1.


Assuntos
Proteínas de Transporte/metabolismo , Núcleo Celular/metabolismo , Proteínas Fúngicas/metabolismo , Complexo de Proteínas Formadoras de Poros Nucleares , Sinais Direcionadores de Proteínas/metabolismo , RNA Fúngico/metabolismo , Proteínas de Ligação a RNA , Proteínas de Saccharomyces cerevisiae , Sequência de Aminoácidos , Sequência de Bases , Transporte Biológico , Proteínas de Transporte/genética , Linhagem Celular , Clonagem Molecular , Humanos , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Membrana Nuclear/metabolismo , Proteínas Nucleares/genética , Proteínas Nucleares/metabolismo , Oligodesoxirribonucleotídeos , RNA Mensageiro/metabolismo , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo
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