Detalhe da pesquisa
1.
SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories.
Nucleic Acids Res
; 2024 May 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-38738621
2.
RNA tertiary structure prediction in CASP15 by the GeneSilico group: Folding simulations based on statistical potentials and spatial restraints.
Proteins
; 91(12): 1800-1810, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-37622458
3.
RNAProbe: a web server for normalization and analysis of RNA structure probing data.
Nucleic Acids Res
; 48(W1): W292-W299, 2020 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-32504492
4.
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements.
Nucleic Acids Res
; 48(22): 12436-12452, 2020 12 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-33166999
5.
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models.
Int J Mol Sci
; 23(17)2022 Aug 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-36077037
6.
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information.
Nucleic Acids Res
; 46(D1): D202-D205, 2018 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-29069520
7.
MODOMICS: a database of RNA modification pathways. 2017 update.
Nucleic Acids Res
; 46(D1): D303-D307, 2018 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-29106616
8.
Lessons from application of the UNRES force field to predictions of structures of CASP10 targets.
Proc Natl Acad Sci U S A
; 110(37): 14936-41, 2013 Sep 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-23980156
9.
A Maximum-Likelihood Approach to Force-Field Calibration.
J Chem Inf Model
; 55(9): 2050-70, 2015 Sep 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-26263302
10.
WeFold: a coopetition for protein structure prediction.
Proteins
; 82(9): 1850-68, 2014 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-24677212
11.
Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field.
Methods Mol Biol
; 2376: 399-416, 2022.
Artigo
em Inglês
| MEDLINE | ID: mdl-34845623
12.
Modeling of Three-Dimensional RNA Structures Using SimRNA.
Methods Mol Biol
; 2165: 103-125, 2020.
Artigo
em Inglês
| MEDLINE | ID: mdl-32621221
13.
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12.
Sci Rep
; 8(1): 9939, 2018 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-29967418
14.
A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions.
J Mol Model
; 20(8): 2306, 2014 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-25024008