Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 60
Filtrar
Mais filtros

Base de dados
País/Região como assunto
Tipo de documento
Intervalo de ano de publicação
1.
Ecotoxicol Environ Saf ; 252: 114628, 2023 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-36774796

RESUMO

Ongoing and extensive use of pesticides negatively impact the environment and human health. Microbe-based remediation bears importance as it is an eco-friendly and cost-effective technique. The present study investigated chlorpyrifos (CHL) and glyphosate (GLY) degrading potential of Bacillus cereus AKAD 3-1, isolated from the soybean rhizosphere. Optimization and validation of different process variables were carried out by response surface methodology (RSM) and artificial neural network (ANN). Critical parameters which affect the degradation process are initial pesticide concentration, pH, and inoculum size. At optimum conditions, the bacterial strain demonstrated 94.52% and 83.58% removal of chlorpyrifos and glyphosate, respectively. Both Central-composite design (CCD-RSM) and ANN approaches proved to perform well in modeling and optimizing the growth conditions. The optimum ANN-GA model resulted in R2 ≥ 0.99 for chlorpyrifos and glyphosate, while in the case of RSM, the obtained R2 value was 0.96 and 0.95, respectively. Results indicated that the process variables significantly (p < 0.05) impact chlorpyrifos and glyphosate biodegradation. Moreover, the predicted RSM model had a "lack of fit p-value" of "0.8849" and "0.2502" for chlorpyrifos and glyphosate, respectively. GC-MS analysis revealed that the strain first converted chlorpyrifos into 3,5,6-trichloro pyridin-2-ol & O, O-diethyl O-hydrogen phosphorothiate. Later, these intermediate metabolites were broken and completely mineralized into non-toxic by-products. Similarly, glyphosate was first converted into 2-(methylamino) acetic acid and amino-oxyphosphonic acid, which were further mineralized without any toxic by-products. Taken together, the results of this study clarify the biodegradation pathways and highlights the promising potential of B. cereus AKAD 3-1 in the bioremediation of chlorpyrifos and glyphosate-polluted environments.


Assuntos
Clorpirifos , Praguicidas , Aminoácidos , Biodegradação Ambiental , Clorpirifos/metabolismo , Cromatografia Gasosa-Espectrometria de Massas , Redes Neurais de Computação , Praguicidas/metabolismo , Glifosato
2.
J Biomed Inform ; 128: 104040, 2022 04.
Artigo em Inglês | MEDLINE | ID: mdl-35259544

RESUMO

Searching for health information online is becoming customary for more and more consumers every day, which makes the need for efficient and reliable question answering systems more pressing. An important contributor to the success rates of these systems is their ability to fully understand the consumers' questions. However, these questions are frequently longer than needed and mention peripheral information that is not useful in finding relevant answers. Question summarization is one of the potential solutions to simplifying long and complex consumer questions before attempting to find an answer. In this paper, we study the task of abstractive summarization for real-world consumer health questions. We develop an abstractive question summarization model that leverages the semantic interpretation of a question via recognition of medical entities, which enables generation of informative summaries. Towards this, we propose multiple Cloze tasks (i.e. the task of filing missing words in a given context) to identify the key medical entities that enforce the model to have better coverage in question-focus recognition. Additionally, we infuse the decoder inputs with question-type information to generate question-type driven summaries. When evaluated on the MeQSum benchmark corpus, our framework outperformed the state-of-the-art method by 10.2 ROUGE-L points. We also conducted a manual evaluation to assess the correctness of the generated summaries.


Assuntos
Semântica
3.
Curr Microbiol ; 79(10): 295, 2022 Aug 22.
Artigo em Inglês | MEDLINE | ID: mdl-35989412

RESUMO

Gut microbiomes, a consortium of microorganisms that live in the animal gut, are highly engineered microbial communities. It makes a major contribution to digestive health, metabolism management, and the development of a strong immune system in the host. The present study was taken up to answer the long-running question about the existence of truly indigenous microflora of the epigeic earthworm gut. This is due to the general difficulties of culturing many of the microorganisms found in soil or earthworms' gut. Keeping this fact in a view, the metagenomics approach using 16S rRNA marker gene incorporated with amplicon-based sequencing was used to explore microbiota of commercially overriding, diversely fed epigeic earthworm Eudrilus eugeniae (Kinberg) in three varied habitats viz., artificial soil (AS), organic agricultural farm soil (OAFS) and conventional agriculture farm soil (CAFS). There are predominant bacteria that belong to different phyla such as Proteobacteria (29.72-76.81%), Actinobacteria (11.06-34.42%), Firmicutes (6.02-19.81%), and Bacteroidetes (2.40-9.22%) present in the gut of E. eugeniae. The alpha diversity (Observed species, Chao1, ACE, Shannon, Simpson, and Fisher alpha) indices showed that OAFS had significantly higher alpha diversity than AS and CAFS groups. The core microbiota analysis showed that OAFS and AS groups had a relatively similar bacterial panel in comparison to the CAFS group. Various statistical tools i.e. MetagenomeSeq, LEfSe, and Random Forest analysis were performed and the findings demonstrated prevalence of the most significant bacterial genera; Aeromonas, Gaiella, and Burkholderia in CAFS group. Nonetheless, in AS and OAFS groups, the common existence of Anaerosporobacter and Aquihabitans were found respectively. Metagenomic functional prediction revealed that earthworms' gut microbial communities were actively involved in multiple organic and xenobiotics compound degradation-related pathways. This is the first research to use high-throughput 16S rRNA gene amplicon sequencing to show the gut microbiota of E. eugeniae in diverse agricultural systems. The findings suggest the configuration of the gut microbiota of earthworms and its potential role in the soil ecosystem depends on the microbial communities of the soil.


Assuntos
Actinobacteria , Microbioma Gastrointestinal , Microbiota , Oligoquetos , Actinobacteria/genética , Animais , Bactérias/genética , Microbioma Gastrointestinal/genética , Metagenômica , Oligoquetos/genética , Oligoquetos/microbiologia , RNA Ribossômico 16S/genética , Solo
4.
Wetlands (Wilmington) ; 42(8): 107, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36373131

RESUMO

Healthy pond ecosystems are critical for achieving several sustainable development goals (SDG) through numerous ecosystem services (e.g., flood control, nutrient retention, and carbon sequestration). However, the socio-economic and ecological value of ponds is often underestimated compared to the larger water bodies. Ponds are highly vulnerable to mounting land-use pressures (e.g., urban expansion, and agriculture intensification) and environmental changes, leading to degradation and loss of the pond ecosystem. The narrow utilitarian use-based conservation fails to recognize the multiple anthropogenic pressures and provides narrow solutions which are inefficient to regenerate the degraded pond ecosystem. In this paper, we holistically examined the legal challenges (policies) and key anthropogenic and environmental pressures responsible for pond degradation in India. The country is strongly dedicated to attaining SDG and circular economy (CE) through aquatic ecosystem conservation and restoration. Considerable efforts are required at the administration level to recognize the contribution of pond ecosystem services in attaining global environmental goals and targets. Worldwide restoration strategies were reviewed, and a framework for pond restoration and conservation was proposed, which includes policies and incentives, technologies such as environmental-DNA (e-DNA), life cycle assessment (LCA), and other ecohydrological measures. Nature-based solutions (NBS) offer a sustainable and cost-effective approach to restoring the pond's natural processes. Furthermore, linkage between the pond ecosystem and the CE was assessed to encourage a regenerative system for biodiversity conservation. This study informs the need for extensive actions and legislative reforms to restore and conserve the pond ecosystems. Supplementary Information: The online version contains supplementary material available at 10.1007/s13157-022-01624-9.

5.
Environ Monit Assess ; 194(9): 601, 2022 Jul 22.
Artigo em Inglês | MEDLINE | ID: mdl-35864231

RESUMO

Concentrations, sources, and atmospheric processing of water-soluble ionic species associated with PM2.5 collected from 2015 to 2017 were studied in Jammu, an urban location in the North-Western Himalayan Region (NWHR). Being ecologically sensitive and sparsely studied for dynamics in PM2.5 and associated WSIS, the present study is important for developing robust air pollution abatement strategies for the air-shed of NWHR. Twenty-four hourly PM2.5 samples were collected on weekly basis at a receptor site and analyzed for WSIS using ion chromatography system. On annual basis, total sum of WSIS (ΣWSIS) contributed about 28.5% of PM2.5, where the contribution of sulfate-nitrate-ammonium, a proxy for secondary inorganic aerosols (SIA), was found to be 18.7% of PM2.5. The ΣWSIS and PM2.5 concentration showed a seasonal cycle with the maximum concentration during winters and the minimum in summers. Mass fraction of ΣWSIS in PM2.5 showed an anti-phase seasonal pattern indicating more source activity during summers. Season-wise, dominant WSIS constituting PM2.5 were NO3-, SO42-, NH4+, and K+ during winters; whereas summer was marked with dominant contributions from SO42-, NH4+, Ca2+, and K+. Seasonal variability exhibited among SIA constituents underscored the crucial role of air temperature and relative humidity regime. It was observed that nss-K+ + NH4+ were sufficient to neutralize most of the acidic species arising from precursor gases (NOx and SOx). Using principal component analysis, five major sources and processes, viz. (a) biomass burning activities, (b) secondary inorganic aerosol formation, (c) input from re-suspended dust, (d) transported dust, and (e) fertilizer residue, were identified for the emissions of PM2.5-associated WSIS over Jammu. In future studies, impacts of dry and/or wet deposition of aerosol-associated WSIS on the crop productivity in the region should be studied.


Assuntos
Poluentes Atmosféricos , Material Particulado , Aerossóis/análise , Poluentes Atmosféricos/análise , Poeira/análise , Monitoramento Ambiental/métodos , Nitratos/análise , Tamanho da Partícula , Material Particulado/análise , Estações do Ano , Água/análise
6.
Environ Monit Assess ; 194(4): 298, 2022 Mar 26.
Artigo em Inglês | MEDLINE | ID: mdl-35347457

RESUMO

The additive time-series decomposition analysis was performed on National Oceanic and Atmospheric Administration Solar Backscatter Ultraviolet Instrument Merge satellite dataset version 8.6 for the period January 1979 to December 2019 with an objective to detect and apportion long-term trends present in the total ozone column (TOC) and the long-term trends exist in the respective ozone contents present in the vertical sub-columns constituting the TOC viz. upper, middle and lower stratosphere as well as near-surface for the tropical region. Linear regression analysis was performed on the deseasonalized monthly mean time series of TOC and corresponding ozone contents present in each partitioned layer for three different time spans, viz. 1979-2019 (complete time series), 1979-1998 (pre-inflection years), and 1999-2019 (post-inflection years), where 1998 was taken as inflection year. For the complete time-series, statistically significant negative trends were observed in TOC and corresponding ozone contents in the sub-columns over most of the tropical region. Expectedly, during pre-inflection years, strong negative trends were noted for TOC and ozone contents in the partitioned vertical layers. In contrast, during the post-inflection year time span, long-term trends in TOC were statistically insignificant over two-third of the tropical region, but one-third of the subtropical region exhibited negative trends in TOC. During this time span, positive trends were observed in the ozone contents present in the upper stratospheric sub-column. However, negative trends in ozone contents persisted in the middle and the lower stratosphere. It was interesting to note that the ozone contents confined in near-surface layer manifested strong negative trends during pre-inflection years and the same reversed into strong positive trends that in post-inflection span. The observed, contrasting, long-term trends and variability in the respective partitioned layer of the TOC confounded any clear sign of recovery in the TOC over the tropical region. The continuation of declining trends in the middle stratosphere and increasing trends in the near-surface layer of ozone contents is a matter of concern.


Assuntos
Ozônio , Monitoramento Ambiental , Ozônio/análise , Fatores de Tempo
7.
J Cell Sci ; 131(1)2018 01 08.
Artigo em Inglês | MEDLINE | ID: mdl-29180517

RESUMO

Phosphatidylinositol transfer proteins (PITPs) are essential regulators of PLC signalling. The PI transfer domain (PITPd) of multi-domain PITPs is reported to be sufficient for in vivo function, questioning the relevance of other domains in the protein. In Drosophila photoreceptors, loss of RDGBα, a multi-domain PITP localized to membrane contact sites (MCSs), results in multiple defects during PLC signalling. Here, we report that the PITPd of RDGBα does not localize to MCSs and fails to support function during strong PLC stimulation. We show that the MCS localization of RDGBα depends on the interaction of its FFAT motif with dVAP-A. Disruption of the FFAT motif (RDGBFF/AA) or downregulation of dVAP-A, both result in mis-localization of RDGBα and are associated with loss of function. Importantly, the ability of the PITPd in full-length RDGBFF/AA to rescue mutant phenotypes was significantly worse than that of the PITPd alone, indicating that an intact FFAT motif is necessary for PITPd activity in vivo Thus, the interaction between the FFAT motif and dVAP-A confers not only localization but also intramolecular regulation on lipid transfer by the PITPd of RDGBα. This article has an associated First Person interview with the first author of the paper.


Assuntos
Proteínas de Drosophila/metabolismo , Retículo Endoplasmático/metabolismo , Proteínas do Olho/metabolismo , Proteínas de Membrana/metabolismo , Proteínas de Transferência de Fosfolipídeos/metabolismo , Transdução de Sinais , Animais , Sítios de Ligação , Drosophila , Proteínas de Drosophila/genética , Proteínas do Olho/genética , Proteínas de Membrana/genética , Ligação Proteica
8.
Environ Monit Assess ; 192(8): 517, 2020 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-32666386

RESUMO

Particulate n-alkanes are major constituents of organic aerosols (OA). Being primary in origin, chemically stable and thus long-lived, n-alkanes retains source signatures and along with diagnostic parameters have extensively been used to identify source(s) of OA. Systematic, yearlong study was carried out in the Dhauladhar region of North-Western Himalaya (NWH) to investigate dynamics in the composition and concentration of aerosol-associated n-alkanes. PM10 samples were collected for 24 h, once every week, at an urban mid-altitude location (Dharamshala) and a rural low-altitude site (Pohara). Particulate bound n-alkanes were identified and quantified using thermal desorption gas chromatography mass spectrometry (TD-GCMS). Annual mean concentrations of total n-alkanes (TNA) were 211 ± 99 ng m-3 and 223 ± 83 ng m-3, while mass fractions of TNA in PM10 were 4410 ± 1759 ppm and 3622 ± 1243 ppm at Dharamshala and Pohara, respectively. At both sites, a slight dominance of odd carbon-numbered n-alkanes was noticed. The TNA concentration and associated diagnostic parameters indicated unique source profiles at rural and urban locations. Significant seasonal variations were attributed to the contrasting land-use settings and meteorological variations. Influence of petrogenic contributions at urban location and predominance of biogenic contributions at rural location were observed in spring and autumn seasons. Preliminary insights on sources of organic aerosols are presented here. The diagnostic parameters allowed apportionment of biogenic and petrogenic sources. Biogenic emissions from agricultural practices viz. harvesting and threshing were predominant in the rural settings, while tourism-led anthropogenic contributions significantly add to petrogenic contributions in urban environment of the NWH region.


Assuntos
Poluentes Atmosféricos/análise , Material Particulado/análise , Aerossóis/análise , Alcanos/análise , Monitoramento Ambiental , Estações do Ano
9.
Environ Monit Assess ; 191(10): 614, 2019 Sep 05.
Artigo em Inglês | MEDLINE | ID: mdl-31489514

RESUMO

Globally, rivers and streams are experiencing declining water quality. Anthropogenic activities largely contribute to surface water pollution. Understanding human-induced influence on river water quality remains a challenge owing to spatiotemporal variations. In this study, we assessed the influence of various land uses (LU) on 16 water quality parameters of the Mun River, a tributary of the Mekong River, at different scales. Water quality was statistically analyzed both spatially and temporally (1995-2010). Seasonal and annual effect of LU on water quality was evaluated at buffer zone scale and sub-basin scale (i.e., catchment scale) using multiple regression analysis. The result showed that urban LU extensively adds to the nutrient concentration [i.e., total phosphorus (TP), ammonia nitrogen (NH3-N)] followed by agriculture LU at the sub-basin scale. Site-specific variability of TP is explained by urban LU and biological oxygen demand (BOD) by agriculture LU at the 5-km buffer in Upper and Middle Mun whereas at Lower Mun, the 20-km buffer explains the variability of suspended solids (SS) and total suspended solids (TSS), suggesting a more localized effect on the parameters upstream. The high concentration of parameters was noted in the dry season whereas the opposite was true for fecal coliform bacteria (FCB), SS, and TP. The maximum parameter concentration of NH3-N, FCB, and total coliform bacteria exceeds the permissible surface water quality standards of the Pollution Control Department (PCD) of Thailand in all three sub-basins. The study suggests the need for multi-scale interventions and effective pollution control measures focusing on nutrient, pathogenic bacteria, and solids pollution to improve the river water quality of large river basin.


Assuntos
Agricultura , Monitoramento Ambiental , Rios , Urbanização , Qualidade da Água , Humanos , Rios/química , Rios/microbiologia , Estações do Ano , Tailândia , Clima Tropical , Poluição da Água/análise , Qualidade da Água/normas
10.
Comput Math Organ Theory ; 25(1): 48-59, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-32577089

RESUMO

As America's opioid crisis has become an "epidemic of epidemics," Ohio has been identified as one of the high burden states regarding fentanyl-related overdose mortality. This study aims to examine changes in the availability of fentanyl, fentanyl analogs, and other non-pharmaceutical opioids on cryptomarkets and assess relationship with the trends in unintentional overdoses in Ohio to provide timely information for epidemiologic surveillance. Cryptomarket data were collected at two distinct periods of time: (1) Agora data covered June 2014-September 2015 and were obtained from Grams archive; (2) Dream Market data from March-April 2018 were extracted using a dedicated crawler. A Named Entity Recognition algorithm was developed to identify and categorize the type of fentanyl and other synthetic opioids advertised on cryptomarkets. Time-lagged correlations were used to assess the relationship between the fentanyl, fentanyl analog and other synthetic opioid-related ads from cryptomarkets and overdose data from the Cincinnati Fire Department Emergency Responses and Montgomery County Coroner's Office. Analysis from the cryptomarket data reveals increases in fentanyl-like drugs and changes in the types of fentanyl analogues and other synthetic opioids advertised in 2015 and 2018 with potent substances like carfentanil available during the second period. The time-lagged correlation was the largest when comparing Agora data to Cincinnati Emergency Responses 1 month later 0.84 (95% CI 0.45, 0.96). The time-lagged correlation between Agora data and Montgomery County drug overdoses was the largest when comparing synthetic opioid-related Agora ads to Montgomery County overdose deaths 7 months later 0.78 (95% CI 0.47, 0.92). Further investigations are required to establish the relationship between cryptomarket availability and unintentional overdose trends related to specific fentanyl analogs and/or other illicit synthetic opioids.

11.
PLoS Genet ; 11(1): e1004948, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25633995

RESUMO

Multiple PIP2 dependent molecular processes including receptor activated phospholipase C activity occur at the neuronal plasma membranes, yet levels of this lipid at the plasma membrane are remarkably stable. Although the existence of unique pools of PIP2 supporting these events has been proposed, the mechanism by which they are generated is unclear. In Drosophila photoreceptors, the hydrolysis of PIP2 by G-protein coupled phospholipase C activity is essential for sensory transduction of photons. We identify dPIP5K as an enzyme essential for PIP2 re-synthesis in photoreceptors. Loss of dPIP5K causes profound defects in the electrical response to light and light-induced PIP2 dynamics at the photoreceptor membrane. Overexpression of dPIP5K was able to accelerate the rate of PIP2 synthesis following light induced PIP2 depletion. Other PIP2 dependent processes such as endocytosis and cytoskeletal function were unaffected in photoreceptors lacking dPIP5K function. These results provide evidence for the existence of a unique dPIP5K dependent pool of PIP2 required for normal Drosophila phototransduction. Our results define the existence of multiple pools of PIP2 in photoreceptors generated by distinct lipid kinases and supporting specific molecular processes at neuronal membranes.


Assuntos
Fenômenos Fisiológicos Oculares/genética , Fosfatidilinositol 4,5-Difosfato/metabolismo , Fosfoinositídeo Fosfolipase C/genética , Fosfotransferases (Aceptor do Grupo Álcool)/genética , Células Fotorreceptoras/metabolismo , Animais , Membrana Celular/genética , Membrana Celular/metabolismo , Citoesqueleto/genética , Citoesqueleto/metabolismo , Drosophila , Drosophila melanogaster , Transdução de Sinal Luminoso/genética , Proteínas de Membrana/genética , Proteínas de Membrana/metabolismo , Fosfatidilinositol 4,5-Difosfato/genética , Fosfoinositídeo Fosfolipase C/metabolismo , Fosfotransferases (Aceptor do Grupo Álcool)/metabolismo , Retina/metabolismo , Retina/fisiologia , Transdução de Sinais/genética
12.
J Cell Sci ; 128(17): 3330-44, 2015 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-26203165

RESUMO

Many membrane receptors activate phospholipase C (PLC) during signalling, triggering changes in the levels of several plasma membrane lipids including phosphatidylinositol (PtdIns), phosphatidic acid (PtdOH) and phosphatidylinositol 4,5-bisphosphate [PtdIns(4,5)P2]. It is widely believed that exchange of lipids between the plasma membrane and endoplasmic reticulum (ER) is required to restore lipid homeostasis during PLC signalling, yet the mechanism remains unresolved. RDGBα (hereafter RDGB) is a multi-domain protein with a PtdIns transfer protein (PITP) domain (RDGB-PITPd). We find that, in vitro, the RDGB-PITPd binds and transfers both PtdOH and PtdIns. In Drosophila photoreceptors, which experience high rates of PLC activity, RDGB function is essential for phototransduction. We show that binding of PtdIns to RDGB-PITPd is essential for normal phototransduction; however, this property is insufficient to explain the in vivo function because another Drosophila PITP (encoded by vib) that also binds PtdIns cannot rescue the phenotypes of RDGB deletion. In RDGB mutants, PtdIns(4,5)P2 resynthesis at the plasma membrane following PLC activation is delayed and PtdOH levels elevate. Thus RDGB couples the turnover of both PtdIns and PtdOH, key lipid intermediates during G-protein-coupled PtdIns(4,5)P2 turnover.


Assuntos
Proteínas de Drosophila/metabolismo , Proteínas do Olho/metabolismo , Transdução de Sinal Luminoso/fisiologia , Proteínas de Membrana/metabolismo , Ácidos Fosfatídicos/metabolismo , Fosfatidilinositol 4,5-Difosfato/metabolismo , Fosfolipases Tipo C/metabolismo , Animais , Proteínas de Drosophila/genética , Drosophila melanogaster , Proteínas do Olho/genética , Proteínas de Membrana/genética , Ácidos Fosfatídicos/genética , Fosfatidilinositol 4,5-Difosfato/genética , Fosfolipases Tipo C/genética
13.
Biochem Soc Trans ; 44(2): 447-51, 2016 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-27068953

RESUMO

Several recent studies have demonstrated the existence of membrane contact sites (MCS) between intracellular organelles in eukaryotic cells. Recent exciting studies have also demonstrated the existence of biomolecular interactions at these contact sites in mediating changes in the membrane composition of the cellular compartments. However, the role of such contact sites in regulating organelle function and physiological processes remains less clear. In this review we discuss the existence of a contact site between the plasma membrane (PM) and the endoplasmic reticulum (ER) inDrosophilaphotoreceptors. Further, we discuss the role of specific proteins present at this location in regulating phospholipid turnover and its impact in regulating a physiological process, namely phototransduction.


Assuntos
Modelos Biológicos , Células Fotorreceptoras de Invertebrados/metabolismo , Transdução de Sinais , Animais , Drosophila
14.
Biochem Soc Trans ; 44(1): 286-92, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26862217

RESUMO

Phosphatidylinositol (PI) is the precursor lipid for the synthesis of PI 4,5-bisphosphate [PI(4,5)P2] at the plasma membrane (PM) and is sequentially phosphorylated by the lipid kinases, PI 4-kinase and phosphatidylinositol 4-phosphate (PI4P)-5-kinase. Receptor-mediated hydrolysis of PI(4,5)P2 takes place at the PM but PI resynthesis occurs at the endoplasmic reticulum (ER). Thus PI(4,5)P2 resynthesis requires the reciprocal transport of two key intermediates, phosphatidic acid (PA) and PI between the ER and the PM. PI transfer proteins (PITPs), defined by the presence of the PITP domain, can facilitate lipid transfer between membranes; the PITP domain comprises a hydrophobic cavity with dual specificity but accommodates a single phospholipid molecule. The class II PITP, retinal degeneration type B (RdgB)α is a multi-domain protein and its PITP domain can bind and transfer PI and PA. In Drosophila photoreceptors, a well-defined G-protein-coupled phospholipase Cß (PLCß) signalling pathway, phototransduction defects resulting from loss of RdgBα can be rescued by expression of the PITP domain provided it is competent for both PI and PA transfer. We propose that RdgBα proteins maintain PI(4,5)P2 homoeostasis after PLC activation by facilitating the reciprocal transport of PA and PI at ER-PM membrane contact sites.


Assuntos
Membrana Celular/metabolismo , Proteínas de Drosophila/metabolismo , Drosophila melanogaster/metabolismo , Retículo Endoplasmático/metabolismo , Proteínas do Olho/metabolismo , Proteínas de Membrana/metabolismo , Ácidos Fosfatídicos/metabolismo , Fosfatidilinositóis/metabolismo , Células Fotorreceptoras de Invertebrados/metabolismo , Fosfolipases Tipo C/metabolismo , Animais , Caenorhabditis elegans , Homeostase , Transdução de Sinal Luminoso , Fosfatidilinositol 4,5-Difosfato/metabolismo , Transdução de Sinais
15.
Database (Oxford) ; 20242024 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-38564306

RESUMO

Inflammatory Bowel Disease (IBD) therapies are ineffective in at least 40% patients, and transcriptomic datasets have been widely used to reveal the pathogenesis and to identify the novel drug targets for these patients. Although public IBD transcriptomic datasets are available from many web-based tools/databases, due to the unstructured metadata and data description of these public datasets, most of these tools/databases do not allow querying datasets based on multiple keywords (e.g. colon and infliximab). Furthermore, few tools/databases can compare and integrate the datasets from the query results. To fill these gaps, we have developed IBDTransDB (https://abbviegrc.shinyapps.io/ibdtransdb/), a manually curated transcriptomic database for IBD. IBDTransDB includes a manually curated database with 34 transcriptomic datasets (2932 samples, 122 differential comparisons) and a query system supporting 35 keywords from 5 attributes (e.g. tissue and treatment). IBDTransDB also provides three modules for data analyses and integration. IBDExplore allows interactive visualization of differential gene list, pathway enrichment, gene signature and cell deconvolution analyses from a single dataset. IBDCompare supports comparisons of selected genes or pathways from multiple datasets across different conditions. IBDIntegrate performs meta-analysis to prioritize a list of genes/pathways based on user-selected datasets and conditions. Using two case studies related to infliximab treatment, we demonstrated that IBDTransDB provides a unique platform for biologists and clinicians to reveal IBD pathogenesis and identify the novel targets by integrating with other omics data. Database URL: https://abbviegrc.shinyapps.io/ibdtransdb/.


Assuntos
Perfilação da Expressão Gênica , Doenças Inflamatórias Intestinais , Humanos , Infliximab , Transcriptoma/genética , Bases de Dados Factuais , Doenças Inflamatórias Intestinais/genética
16.
ACS Earth Space Chem ; 8(5): 983-991, 2024 May 16.
Artigo em Inglês | MEDLINE | ID: mdl-38774361

RESUMO

Understanding the complex interactions between atmospheric aerosols and water vapor in subsaturated regions of the atmosphere is crucial for modeling and predicting aerosol-cloud-radiation-climate interactions. However, the microphysical mechanisms of these interactions for ambient aerosols remain poorly understood. For this study, size-resolved samples were collected from a high-altitude, relatively clean site situated in the Western Ghats of India during the monsoon season, in order to study background and preindustrial processes as a baseline for climate functioning within the context of the most polluted region of the world. Measurements of humidity-dependent mass-based growth factors, hygroscopicity, deliquescence behavior, and aerosol liquid water content (ALWC) were made by a novel approach using a quartz crystal microbalance based on a piezo-electric sensor. The climate-relevant fine-mode aerosols (≤2.5 µm) exhibited strong size-dependent variations in their interactions with water vapor and contributed a high fraction of ALWC. Deliquescence occurred for relatively large aerosols (diameter >180 nm) but was absent for smaller aerosols. The deliquescence relative humidity for ambient aerosols was significantly lower than that of pure inorganic salts, suggesting a strong influence of organic species. Our study establishes an improved approach for accurately measuring aerosol water uptake characteristics of ambient aerosols in the subsaturated regime, aiding in the assessment of radiative forcing effects and improving climate models.

17.
Biochim Biophys Acta ; 1821(8): 1154-65, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22487656

RESUMO

Drosophila photoreceptors are sensory neurons whose primary function is the transduction of photons into an electrical signal for forward transmission to the brain. Photoreceptors are polarized cells whose apical domain is organized into finger like projections of plasma membrane, microvilli that contain the molecular machinery required for sensory transduction. The development of this apical domain requires intense polarized membrane transport during development and it is maintained by post developmental membrane turnover. Sensory transduction in these cells involves a high rate of G-protein coupled phosphatidylinositol 4,5 bisphosphate [PI(4,5)P(2)] hydrolysis ending with the activation of ion channels that are members of the TRP superfamily. Defects in this lipid-signaling cascade often result in retinal degeneration, which is a consequence of the loss of apical membrane homeostasis. In this review we discuss the various membrane transport challenges of photoreceptors and their regulation by ongoing lipid signaling cascades in these cells. This article is part of a Special Issue entitled Lipids and Vesicular Transport.


Assuntos
Drosophila melanogaster/fisiologia , Metabolismo dos Lipídeos , Fosfatidilinositol 4,5-Difosfato/metabolismo , Células Fotorreceptoras de Invertebrados/metabolismo , Transdução de Sinais/fisiologia , Animais , Transporte Biológico , Membrana Celular/metabolismo , Proteínas de Drosophila/metabolismo , Homeostase , Células Fotorreceptoras de Invertebrados/citologia , Degeneração Retiniana/metabolismo , Canais de Potencial de Receptor Transitório/metabolismo , Vesículas Transportadoras/metabolismo
18.
J Ethnopharmacol ; 317: 116828, 2023 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-37369335

RESUMO

ETHNOPHARMACOLOGICAL RELEVANCE: Asthma is often treated and prevented using the pharmacological properties of traditional medicinal plants. These healthcare systems are among the most well-known, conveniently accessible, and economically priced in India and several other Asian countries. Traditional Indian Ayurvedic plants have the potential to be used as phyto-therapeutics, to create novel anti-asthmatic drugs, and as a cost-effective source of pharmaceuticals. Current conventional therapies have drawbacks, including serious side effects and expensive costs that interfere with treatment compliance and affect the patient's quality of life. The primary objective of the article is to comprehensively evaluate the advancement of research on the protective phytochemicals of traditional plants that target immune responses and signaling cascades in inflammatory experimental asthma models. The study would assist in paving the way for the creation of natural phytomedicines that are protective, anti-inflammatory, and immunomodulatory against asthma, which may then be used in individualized asthma therapy. AIM OF THE STUDY: The study demonstrates the mechanisms of action of phytochemicals present in traditional medicinal plants, diminish pulmonary disorder in both in vivo and in vitro models of asthma. MATERIALS AND METHODS: A comprehensive review of the literature on conventional plant-based asthma therapies was performed from 2006 to 2022. The study uses authoritative scientific sources such as PubMed, PubChem Compound, Wiley Online Library, Science Direct, Springer Link, and Google Scholar to collect information on potential phytochemicals and their mechanisms of action. World Flora Online (http://www.worldfloraonline.org) and Plants of the World Online (https://wcsp.science.kew.org) databases were used for the scientific names of medicinal plants. RESULTS: The study outlines the phytochemical mechanisms of some traditional Ayurveda botanicals used to treat asthma. Active phytochemicals including curcumin, withaferin-A, piperine, glabridin, glycyrrhizin, 18ß-glycyrrhetinic acid, trans-cinnamaldehyde, α-hederin, thymoquinone, eugenol, [6]-shogoal, and gingerol may treat asthma by controlling inflammation and airway remodeling. The study concluded that certain Ayurvedic plants' phytochemicals have the ability to reduce inflammation and modulate the immune system, that can effectively cure asthma. CONCLUSION: Plants used in traditional Ayurvedic medicine have been utilized for millennia, advocating phyto-therapy as a treatment for a variety of illnesses. A theoretical foundation for the use of cutting-edge asthma treatments has been built with the growth of experimental research on traditional phytochemicals. In-depth phytochemical research for the treatment of asthma using Indian Traditional Ayurvedic herbs is compiled in the study. The approach for preventative therapeutics and cutting-edge alternatives to battle the molecular pathways in the pathophysiology of asthma are the key themes of the study. The phytochemical mechanism of action of traditional Ayurvedic herbs is explained to get the attention of the pharmaceutical industry so they can make future anti-asthma drugs for personalized asthma care in the community. The study develops strategies for customized phyto-therapeutics, concentrating on low-cost, side-effect-free approaches that employ bioactive phytochemicals from plants as the major source of effective anti-asthmatic therapy.


Assuntos
Plantas Medicinais , Humanos , Fitoterapia , Qualidade de Vida , Medicina Tradicional , Extratos Vegetais/farmacologia , Extratos Vegetais/uso terapêutico , Compostos Fitoquímicos/farmacologia , Compostos Fitoquímicos/uso terapêutico , Etnofarmacologia
19.
Sci Data ; 10(1): 329, 2023 05 27.
Artigo em Inglês | MEDLINE | ID: mdl-37244917

RESUMO

General public, often called consumers, are increasingly seeking health information online. To be satisfactory, answers to health-related questions often have to go beyond informational needs. Automated approaches to consumer health question answering should be able to recognize the need for social and emotional support. Recently, large scale datasets have addressed the issue of medical question answering and highlighted the challenges associated with question classification from the standpoint of informational needs. However, there is a lack of annotated datasets for the non-informational needs. We introduce a new dataset for non-informational support needs, called CHQ-SocioEmo. The Dataset of Consumer Health Questions was collected from a community question answering forum and annotated with basic emotions and social support needs. This is the first publicly available resource for understanding non-informational support needs in consumer health-related questions online. We benchmark the corpus against multiple state-of-the-art classification models to demonstrate the dataset's effectiveness.

20.
J Chromatogr Sci ; 2023 Sep 06.
Artigo em Inglês | MEDLINE | ID: mdl-37674394

RESUMO

The dry powder inhalation formulation containing vilanterol trifenatate, umeclidinium bromide and fluticasone furoate intended for the therapy of bronchospasm related to chronic obstructive pulmonary disease and bronchial asthma was selected for the development and validation of a novel, selective, accurate, precise, quick and cost-efficient reversed-phase, high-performance liquid chromatography method. Neither an official monograph nor a single method has yet been published for the simultaneous estimation of these three compounds, which makes this method novel. The stationary phase of an ACE-C18-PFP column (250 mm × 4.6 mm, 5 µ) was used with a mobile phase of 25-mM sodium perchlorate buffer (pH 2.5 adjusted with ortho-phosphoric acid) and acetonitrile (40:60% v/v) at a flow rate of 1 mL/min to optimize chromatographic variables. The column temperature was kept at 40°C, and detection was at 224 nm, which was the isosbestic point of these three drugs. Well-resolved good peak symmetry was obtained for all three molecules by isocratic elution in less than 10 min, and the retention times of vilanterol trifenatate, umeclidinium bromide and fluticasone furoate were found to be 3.7, 5.4 and 8.3 min, respectively. The proposed method was validated as per ICH Q2 (R1) guidelines, and the calibration curves were linear in concentration ranges of 5-35 µg/mL for vilanterol trifenatate, 5-80 µg/mL for umeclidinium bromide and 5-150 µg/mL for fluticasone furoate, with mean % recoveries of 99-100%. The limits of detection and quantitation are 0.15 and 0.45 µg/mL for vilanterol trifenatate, 0.58 and 1.77 µg/mL for umeclidinium bromide and 0.32 and 0.96 µg/mL for fluticasone furoate, respectively. Hence, the proposed RP-HPLC technique was successfully used to quantify the inhalation formulation containing all three compounds.

SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA