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1.
Proc Natl Acad Sci U S A ; 119(7)2022 02 15.
Artigo em Inglês | MEDLINE | ID: mdl-35145031

RESUMO

Bacteria are efficient colonizers of a wide range of secluded microhabitats, such as soil pores, skin follicles, or intestinal crypts. How the structural diversity of these habitats modulates microbial self-organization remains poorly understood, in part because of the difficulty to precisely manipulate the physical structure of microbial environments. Using a microfluidic device to grow bacteria in crypt-like incubation chambers of systematically varied lengths, we show that small variations in the physical structure of the microhabitat can drastically alter bacterial colonization success and resistance against invaders. Small crypts are uncolonizable; intermediately sized crypts can stably support dilute populations, while beyond a second critical length scale, populations phase separate into a dilute region and a jammed region. The jammed state is characterized by extreme colonization resistance, even if the resident strain is suppressed by an antibiotic. Combined with a flexible biophysical model, we demonstrate that colonization resistance and associated priority effects can be explained by a crowding-induced phase transition, which results from a competition between proliferation and density-dependent cell leakage. The emerging sensitivity to scale underscores the need to control for scale in microbial ecology experiments. Systematic flow-adjustable length-scale variations may serve as a promising strategy to elucidate further scale-sensitive tipping points and to rationally modulate the stability and resilience of microbial colonizers.


Assuntos
Acetobacter/fisiologia , Dispositivos Lab-On-A-Chip , Acetobacter/efeitos dos fármacos , Antibacterianos/farmacologia , Técnicas Bacteriológicas , Farmacorresistência Bacteriana , Tetraciclina/farmacologia
2.
Development ; 148(15)2021 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-34323271

RESUMO

Perturbations to animal-associated microbial communities (the microbiota) have deleterious effects on various aspects of host fitness, but the molecular processes underlying these impacts are poorly understood. Here, we identify a connection between the microbiota and the neuronal factor Arc1 that affects growth and metabolism in Drosophila. We find that Arc1 exhibits tissue-specific microbiota-dependent expression changes, and that germ-free flies bearing a null mutation of Arc1 exhibit delayed and stunted larval growth, along with a variety of molecular, cellular and organismal traits indicative of metabolic dysregulation. Remarkably, we show that the majority of these phenotypes can be fully suppressed by mono-association with a single Acetobacter sp. isolate, through mechanisms involving both bacterial diet modification and live bacteria. Additionally, we provide evidence that Arc1 function in key neuroendocrine cells of the larval brain modulates growth and metabolic homeostasis under germ-free conditions. Our results reveal a role for Arc1 in modulating physiological responses to the microbial environment, and highlight how host-microbe interactions can profoundly impact the phenotypic consequences of genetic mutations in an animal host.


Assuntos
Proteínas do Citoesqueleto/metabolismo , Drosophila/metabolismo , Drosophila/fisiologia , Microbiota/fisiologia , Proteínas do Tecido Nervoso/metabolismo , Acetobacter/fisiologia , Animais , Encéfalo/metabolismo , Encéfalo/fisiologia , Homeostase/fisiologia , Larva/metabolismo , Larva/fisiologia , Mutação/fisiologia , Neurônios/metabolismo , Neurônios/fisiologia , Fenótipo
3.
PLoS Biol ; 18(3): e3000681, 2020 03.
Artigo em Inglês | MEDLINE | ID: mdl-32196485

RESUMO

The interplay between nutrition and the microbial communities colonizing the gastrointestinal tract (i.e., gut microbiota) determines juvenile growth trajectory. Nutritional deficiencies trigger developmental delays, and an immature gut microbiota is a hallmark of pathologies related to childhood undernutrition. However, how host-associated bacteria modulate the impact of nutrition on juvenile growth remains elusive. Here, using gnotobiotic Drosophila melanogaster larvae independently associated with Acetobacter pomorumWJL (ApWJL) and Lactobacillus plantarumNC8 (LpNC8), 2 model Drosophila-associated bacteria, we performed a large-scale, systematic nutritional screen based on larval growth in 40 different and precisely controlled nutritional environments. We combined these results with genome-based metabolic network reconstruction to define the biosynthetic capacities of Drosophila germ-free (GF) larvae and its 2 bacterial partners. We first established that ApWJL and LpNC8 differentially fulfill the nutritional requirements of the ex-GF larvae and parsed such difference down to individual amino acids, vitamins, other micronutrients, and trace metals. We found that Drosophila-associated bacteria not only fortify the host's diet with essential nutrients but, in specific instances, functionally compensate for host auxotrophies by either providing a metabolic intermediate or nutrient derivative to the host or by uptaking, concentrating, and delivering contaminant traces of micronutrients. Our systematic work reveals that beyond the molecular dialogue engaged between the host and its bacterial partners, Drosophila and its associated bacteria establish an integrated nutritional network relying on nutrient provision and utilization.


Assuntos
Acetobacter/fisiologia , Drosophila melanogaster/microbiologia , Drosophila melanogaster/fisiologia , Lactobacillus/fisiologia , Necessidades Nutricionais/fisiologia , Acetobacter/genética , Acetobacter/metabolismo , Aminoácidos/metabolismo , Fenômenos Fisiológicos da Nutrição Animal , Animais , Drosophila melanogaster/crescimento & desenvolvimento , Drosophila melanogaster/metabolismo , Microbioma Gastrointestinal , Interações entre Hospedeiro e Microrganismos , Lactobacillus/genética , Lactobacillus/metabolismo , Larva/crescimento & desenvolvimento , Larva/metabolismo , Larva/microbiologia , Larva/fisiologia , Redes e Vias Metabólicas , Micronutrientes/metabolismo , Especificidade da Espécie
4.
J Bacteriol ; 202(8)2020 03 26.
Artigo em Inglês | MEDLINE | ID: mdl-32015144

RESUMO

Acetobacter pasteurianus is an industrial strain used for the vinegar production. Many A. pasteurianus strains with different phenotypic characteristics have been isolated so far. To understand the genetic background underpinning these phenotypes, a comparative genomic analysis of A. pasteurianus strains was conducted. Based on bioinformatics and experimental results, we report the following. (i) The gene repertoire related to the respiratory chains showed that several horizontal gene transfer events occurred after the divergence of these strains, indicating that the respiratory chain in A. pasteurianus has the diversity to adapt to its environment. (ii) There is a clear difference in thermotolerance even between 12 closely related strains. NBRC 3279, NBRC 3284, and NBRC 3283, in particular, which have only 55 mutations in total, showed differences in thermotolerance. The Na+/H+ antiporter gene nhaK2 was mutated in the thermosensitive NBRC 3279 and NBRC 3284 strains and not in the thermotolerant NBRC 3283 strain. The Na+/H+ antiporter activity of the three strains and expression of nhaK2 gene from NBRC 3283 in the two thermosensitive strains showed that these mutations are critical for thermotolerance. These results suggested that horizontal gene transfer events and several mutations have affected the phenotypes of these closely related strains.IMPORTANCEAcetobacter pasteurianus, an industrial vinegar-producing strain, exhibits diverse phenotypic differences such as respiratory activity related to acetic acid production, acetic acid resistance, or thermotolerance. In this study, we investigated the correlations between genome sequences and phenotypes among closely related A. pasteurianus strains. The gene repertoire related to the respiratory chains showed that the respiratory components of A. pasteurianus has a diversity caused by several horizontal gene transfers and mutations. In three closely related strains with clear differences in their thermotolerances, we found that the insertion or deletion that occurred in the Na+/H+ antiporter gene nhaK2 is directly related to their thermotolerance. Our study suggests that a relatively quick mutation has occurred in the closely related A. pasteurianus due to its genetic instability and that this has largely affected its phenotype.


Assuntos
Acetobacter/genética , Genoma Bacteriano , Acetobacter/classificação , Acetobacter/fisiologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Transferência Genética Horizontal , Temperatura Alta , Fenótipo
5.
PLoS Biol ; 15(4): e2000862, 2017 04.
Artigo em Inglês | MEDLINE | ID: mdl-28441450

RESUMO

Choosing the right nutrients to consume is essential to health and wellbeing across species. However, the factors that influence these decisions are poorly understood. This is particularly true for dietary proteins, which are important determinants of lifespan and reproduction. We show that in Drosophila melanogaster, essential amino acids (eAAs) and the concerted action of the commensal bacteria Acetobacter pomorum and Lactobacilli are critical modulators of food choice. Using a chemically defined diet, we show that the absence of any single eAA from the diet is sufficient to elicit specific appetites for amino acid (AA)-rich food. Furthermore, commensal bacteria buffer the animal from the lack of dietary eAAs: both increased yeast appetite and decreased reproduction induced by eAA deprivation are rescued by the presence of commensals. Surprisingly, these effects do not seem to be due to changes in AA titers, suggesting that gut bacteria act through a different mechanism to change behavior and reproduction. Thus, eAAs and commensal bacteria are potent modulators of feeding decisions and reproductive output. This demonstrates how the interaction of specific nutrients with the microbiome can shape behavioral decisions and life history traits.


Assuntos
Acetobacter/fisiologia , Aminoácidos Essenciais/metabolismo , Drosophila melanogaster/microbiologia , Comportamento Alimentar , Microbioma Gastrointestinal , Lactobacillus/fisiologia , Simbiose , Acetobacter/genética , Acetobacter/crescimento & desenvolvimento , Acetobacteraceae/genética , Acetobacteraceae/crescimento & desenvolvimento , Acetobacteraceae/fisiologia , Aminoácidos Essenciais/administração & dosagem , Aminoácidos Essenciais/análise , Aminoácidos Essenciais/deficiência , Animais , Animais Geneticamente Modificados , Regulação do Apetite , Comportamento Animal , Misturas Complexas/administração & dosagem , Misturas Complexas/química , Proteínas de Drosophila/antagonistas & inibidores , Proteínas de Drosophila/genética , Proteínas de Drosophila/metabolismo , Drosophila melanogaster/genética , Drosophila melanogaster/fisiologia , Enterococcus faecalis/genética , Enterococcus faecalis/crescimento & desenvolvimento , Enterococcus faecalis/fisiologia , Feminino , Preferências Alimentares , Técnicas de Inativação de Genes , Interações Hospedeiro-Parasita , Lactobacillus/genética , Lactobacillus/crescimento & desenvolvimento , Oviposição , Especificidade da Espécie , Fermento Seco/química
6.
Biosci Biotechnol Biochem ; 84(4): 832-841, 2020 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-31851582

RESUMO

Thermotolerant strains are critical for low-cost high temperature fermentation. In this study, we carried out the thermal adaptation of A. pasteurianus IFO 3283-32 under acetic acid fermentation conditions using an experimental evolution approach from 37ºC to 40ºC. The adapted strain exhibited an increased growth and acetic acid fermentation ability at high temperatures, however, with the trade-off response of the opposite phenotype at low temperatures. Genome analysis followed by PCR sequencing showed that the most adapted strain had 11 mutations, a single 64-kb large deletion, and a single plasmid loss. Comparative phenotypic analysis showed that at least the large deletion (containing many ribosomal RNAs and tRNAs genes) and a mutation of DNA polymerase (one of the 11 mutations) critically contributed to this thermotolerance. The relationship between the phenotypic changes and the gene mutations are discussed, comparing with another thermally adapted A. pasteurianus strains obtained previously.


Assuntos
Acetobacter/fisiologia , Evolução Molecular , Genoma Bacteriano , Termotolerância , Ácido Acético/metabolismo , Acetobacter/genética , Acetobacter/metabolismo , Fermentação , Mutação
7.
Food Microbiol ; 92: 103597, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32950138

RESUMO

Acetobacter pasteurianus 386B has been selected as a candidate functional starter culture to better control the cocoa fermentation process. Previously, its genome has been sequenced and a genome-scale metabolic model (GEM) has been reconstructed. To understand its metabolic adaptation to cocoa fermentation conditions, different flux balance analysis (FBA) simulations were performed and compared with experimental data. In particular, metabolic flux distributions were simulated for two phases that characterize the growth of A. pasteurianus 386B under cocoa fermentation conditions, predicting a switch in respiratory chain usage in between these phases. The possible influence on the resulting energy production was shown using a reduced version of the GEM. FBA simulations revealed the importance of the compartmentalization of the ethanol oxidation reactions, namely in the periplasm or in the cytoplasm, and highlighted the potential role of ethanol as a source of carbon, energy, and NADPH. Regarding the latter, the physiological function of a proton-translocating NAD(P)+ transhydrogenase was further investigated in silico. This study revealed the potential of using a GEM to simulate the metabolism of A. pasteurianus 386B, and may provide a general framework toward a better physiological understanding of functional starter cultures in food fermentation processes.


Assuntos
Acetobacter/fisiologia , Cacau/microbiologia , Genoma Bacteriano , Acetobacter/genética , Adaptação Fisiológica , Proteínas de Bactérias/genética , Etanol/metabolismo , Fermentação , Microbiologia de Alimentos , NADP/metabolismo , Sementes/microbiologia
8.
J Exp Biol ; 222(Pt 5)2019 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-30679242

RESUMO

It has been shown that gut microbes are very important for the behavior and development of Drosophila, as the beneficial microbes are involved in the identification of suitable feeding and egg-laying locations. However, in what way these associated gut microbes influence the fitness-related behaviors of Drosophila melanogaster remains unclear. Here, we show that D. melanogaster exhibits different behavioral preferences towards gut microbes. Both adults and larvae were attracted by the volatile compounds of Saccharomyces cerevisiae and Lactobacillus plantarum, but were repelled by Acetobacter malorum in behavioral assays, indicating that an olfactory mechanism is involved in these preference behaviors. While the attraction to yeast was governed by olfactory sensory neurons expressing the odorant co-receptor Orco, the observed behaviors towards the other microbes were retained in flies lacking this co-receptor. By experimentally manipulating the microbiota of the flies, we found that flies did not strive for a diverse microbiome by increasing their preference towards gut microbes that they had not experienced previously. Instead, in some cases, the flies even increased preference for the microbes on which they were reared. Furthermore, exposing Drosophila larvae to all three microbes promoted Drosophila development, while exposure to only S. cerevisiae and A. malorum resulted in the development of larger ovaries and in increased egg numbers in an oviposition assay. Thus, our study provides a better understanding of how gut microbes affect insect behavior and development, and offers an ecological rationale for preferences of flies for different microbes in their natural environment.


Assuntos
Quimiotaxia , Drosophila melanogaster/fisiologia , Microbioma Gastrointestinal/fisiologia , Olfato , Compostos Orgânicos Voláteis/metabolismo , Acetobacter/fisiologia , Animais , Drosophila melanogaster/crescimento & desenvolvimento , Drosophila melanogaster/microbiologia , Feminino , Lactobacillus plantarum/fisiologia , Larva/crescimento & desenvolvimento , Larva/microbiologia , Larva/fisiologia , Masculino , Saccharomyces cerevisiae/fisiologia
9.
J Appl Microbiol ; 127(4): 1101-1112, 2019 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-31283860

RESUMO

AIMS: The formation of metabolically inactive and nongrowing cells is an inevitable by-product of intensive fermentation. This study investigated whether co-feeding can be used to resuscitate nongrowing Acetobacter senegalensis cells to enable them to produce gluconic acid in successive fermentation runs at 38°C. METHODS AND RESULTS: In the first fermentation cycle, 75 g l-1 of glucose were converted to gluconic acid. Subsequently, however, stationary-phase cells were unable to initiate a new fermentation cycle. The majority of stationary-phase cells (97%) were nonculturable on glucose at 38°C. In addition, 54 and 41% of cells contained non-active cellular dehydrogenases and a compromised cell envelope respectively. Co-feeding stationary-phase cells with a mixture of ethanol, glucose and acetic acid for 7 h enabled these cells to grow on 75 g l-1 of glucose and produce gluconic acid. Additionally, 74% of cells contained active forms of cellular dehydrogenases after 7 h of co-feeding. However, co-feeding did not improve cell envelope integrity. Quantification of cellular NAD content showed that stationary-phase cells contained moderately reduced levels of total NAD (NADt) as compared with exponential-phase cells. Interestingly, the analysis of stationary-phase cells showed that co-feeding resulted in higher levels of NADt and NADH, suggesting that the regeneration of NADH is one of the limiting factors of glucose consumption. Expression of catalase and superoxide dismutase was increased in stationary-phase cells, but analysis of protein carbonylation and lipid peroxidation did not confirm an extensive oxidative stress. CONCLUSIONS: Co-feeding with favourable nutrients may enable resuscitation of cells and utilization of less-favourable carbon sources in successive cycles. SIGNIFICANCE AND IMPACT OF THE STUDY: This study proposed a unique method for resuscitation of nongrowing cells during high-temperature fermentation. By applying this method, cells can be used for consecutive fermentation cycles.


Assuntos
Acetobacter , Fermentação/fisiologia , Gluconatos , Temperatura Alta , Acetobacter/metabolismo , Acetobacter/fisiologia , Biotecnologia , Meios de Cultura/química , Meios de Cultura/metabolismo , Gluconatos/análise , Gluconatos/metabolismo
10.
Biosci Biotechnol Biochem ; 80(4): 655-68, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-26566045

RESUMO

Environmental adaptation is considered as one of the most challenging subjects in biology to understand evolutionary or ecological diversification processes and in biotechnology to obtain useful microbial strains. Temperature is one of the important environmental stresses; however, microbial adaptation to higher temperatures has not been studied extensively. For industrial purposes, the use of thermally adapted strains is important, not only to reduce the cooling expenses of the fermentation system, but also to protect fermentation production from accidental failure of thermal management. Recent progress in next-generation sequencing provides a powerful tool to track the genomic changes of the adapted strains and allows us to compare genomic DNA sequences of conventional strains with those of their closely related thermotolerant strains. In this article, we have attempted to summarize our recent approaches to produce thermotolerant strains by thermal adaptation and comparative genomic analyses of Acetobacter pasteurianus for high-temperature acetic acid fermentations, and Zymomonas mobilis and Kluyveromyces marxianus for high-temperature ethanol fermentations. Genomic analysis of the adapted strains has found a large number of mutations and/or disruptions in highly diversified genes, which could be categorized into groups related to cell surface functions, ion or amino acid transporters, and some transcriptional factors. Furthermore, several phenotypic and genetic analyses revealed that the thermal adaptation could lead to decreased ROS generation in cells that produce higher ROS levels at higher temperatures. Thus, it is suggested that the thermally adapted cells could become robust and resistant to many stressors, and thus could be useful for high-temperature fermentations.


Assuntos
Adaptação Fisiológica , Fermentação , Genoma Bacteriano , Genoma Fúngico , Temperatura Alta , Ácido Acético/metabolismo , Acetobacter/genética , Acetobacter/metabolismo , Acetobacter/fisiologia , Elementos de DNA Transponíveis , Kluyveromyces/genética , Kluyveromyces/metabolismo , Kluyveromyces/fisiologia
11.
Food Microbiol ; 58: 68-78, 2016 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-27217361

RESUMO

Acetobacter ghanensis LMG 23848(T) and Acetobacter senegalensis 108B are acetic acid bacteria that originate from a spontaneous cocoa bean heap fermentation process and that have been characterised as strains with interesting functionalities through metabolic and kinetic studies. As there is currently little genetic information available for these species, whole-genome sequencing of A. ghanensis LMG 23848(T) and A. senegalensis 108B and subsequent data analysis was performed. This approach not only revealed characteristics such as the metabolic potential and genomic architecture, but also allowed to indicate the genetic adaptations related to the cocoa bean fermentation process. Indeed, evidence was found that both species possessed the genetic ability to be involved in citrate assimilation and displayed adaptations in their respiratory chain that might improve their competitiveness during the cocoa bean fermentation process. In contrast, other properties such as the dependence on glycerol or mannitol and lactate as energy sources or a less efficient acid stress response may explain their low competitiveness. The presence of a gene coding for a proton-translocating transhydrogenase in A. ghanensis LMG 23848(T) and the genes involved in two aromatic compound degradation pathways in A. senegalensis 108B indicate that these strains have an extended functionality compared to Acetobacter species isolated from other ecosystems.


Assuntos
Acetobacter/genética , Cacau/microbiologia , Microbiologia de Alimentos , Genoma Bacteriano/genética , Genômica , Ácido Acético/metabolismo , Acetobacter/enzimologia , Acetobacter/fisiologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Cacau/metabolismo , Fermentação , Ácido Láctico/metabolismo , NADP Trans-Hidrogenases/genética , NADP Trans-Hidrogenases/metabolismo , Filogenia , Sementes/enzimologia , Sementes/metabolismo , Sementes/microbiologia , Sementes/fisiologia , Análise de Sequência de DNA
12.
Curr Microbiol ; 70(5): 724-9, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-25648427

RESUMO

Acetobacter pasteurianus plays an important role in the process of traditional vinegar production and is also essential for the fermentation of Zhenjiang aromatic vinegar. In this study, we utilized the proteomic approach to analyze the proteomic profile of A. pasteurianus HSZ3-21, and 258 proteins were successfully identified by MALDI-TOF-MS and database search. The hydropathy and GO analyse combined with COG results of the identified proteins revealed the molecular biological characteristics of A. pasteurianus proteins, that is, most proteins of A. pasteurianus were related to metabolic process, binding, catalytic or cellular response. Meanwhile, our results also showed that some proteins of A. pasteurianus may be responsible for acetic acid tolerance, thermotolerance, and stress response. Therefore, the identification of 258 proteins not only deciphers protein composition and functional classification of A. pasteurianus, but also provides useful information for improving quality of Zhenjiang aromatic vinegar.


Assuntos
Acetobacter/química , Proteínas de Bactérias/análise , Proteoma/análise , Ácido Acético/metabolismo , Ácido Acético/toxicidade , Acetobacter/metabolismo , Acetobacter/fisiologia , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Estresse Fisiológico
13.
Commun Agric Appl Biol Sci ; 80(1): 37-43, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26630753

RESUMO

Six strains of acetic acid bacteria were isolated from Moroccan local products and their potential as industrial strains was evaluated in lab-bioreactor. Three of them, namely TAV01, AF01 and CV01, isolated from traditional apple vinegar, apple and cactus fruit, respectively were selected and their responses to high temperature were assessed. Morphological and biochemical identification confirmed that these strains belong to Acetobacter species. Their growth and acetic acid production were compared with the thermoresistant reference strain, Acetobacter senegalensis and mesophilic strains of Acetobacter pasteurianus. The two strains AF01 and CV01 showed abundant growth and noticeable acetic acid production ability at high temperatures (38 to 41°C). A thermophilic character was observed for AF01 strain. Indeed, this bacterium grew better at 38 than 30°C.


Assuntos
Acetobacter/classificação , Acetobacter/fisiologia , Microbiologia de Alimentos , Frutas/microbiologia , Temperatura Alta , Fermentação , Marrocos
14.
Appl Environ Microbiol ; 80(6): 1848-57, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24413595

RESUMO

Four cocoa-specific acetic acid bacterium (AAB) strains, namely, Acetobacter pasteurianus 386B, Acetobacter ghanensis LMG 23848(T), Acetobacter fabarum LMG 24244(T), and Acetobacter senegalensis 108B, were analyzed kinetically and metabolically during monoculture laboratory fermentations. A cocoa pulp simulation medium (CPSM) for AAB, containing ethanol, lactic acid, and mannitol, was used. All AAB strains differed in their ethanol and lactic acid oxidation kinetics, whereby only A. pasteurianus 386B performed a fast oxidation of ethanol and lactic acid into acetic acid and acetoin, respectively. Only A. pasteurianus 386B and A. ghanensis LMG 23848(T) oxidized mannitol into fructose. Coculture fermentations with A. pasteurianus 386B or A. ghanensis LMG 23848(T) and Lactobacillus fermentum 222 in CPSM for lactic acid bacteria (LAB) containing glucose, fructose, and citric acid revealed oxidation of lactic acid produced by the LAB strain into acetic acid and acetoin that was faster in the case of A. pasteurianus 386B. A triculture fermentation with Saccharomyces cerevisiae H5S5K23, L. fermentum 222, and A. pasteurianus 386B, using CPSM for LAB, showed oxidation of ethanol and lactic acid produced by the yeast and LAB strain, respectively, into acetic acid and acetoin. Hence, acetic acid and acetoin are the major end metabolites of cocoa bean fermentation. All data highlight that A. pasteurianus 386B displayed beneficial functional roles to be used as a starter culture, namely, a fast oxidation of ethanol and lactic acid, and that these metabolites play a key role as substrates for A. pasteurianus in its indispensable cross-feeding interactions with yeast and LAB during cocoa bean fermentation.


Assuntos
Acetobacter/fisiologia , Cacau/metabolismo , Microbiologia de Alimentos , Interações Microbianas , Acetobacter/crescimento & desenvolvimento , Acetobacter/metabolismo , Técnicas de Cocultura , Meios de Cultura/química , Etanol/metabolismo , Fermentação , Ácido Láctico/metabolismo , Limosilactobacillus fermentum/crescimento & desenvolvimento , Limosilactobacillus fermentum/metabolismo , Manitol/metabolismo , Oxirredução , Saccharomyces cerevisiae/crescimento & desenvolvimento , Saccharomyces cerevisiae/metabolismo
15.
BMC Genomics ; 14: 526, 2013 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-23902333

RESUMO

BACKGROUND: Acetobacter pasteurianus 386B, an acetic acid bacterium originating from a spontaneous cocoa bean heap fermentation, proved to be an ideal functional starter culture for coca bean fermentations. It is able to dominate the fermentation process, thereby resisting high acetic acid concentrations and temperatures. However, the molecular mechanisms underlying its metabolic capabilities and niche adaptations are unknown. In this study, whole-genome sequencing and comparative genome analysis was used to investigate this strain's mechanisms to dominate the cocoa bean fermentation process. RESULTS: The genome sequence of A. pasteurianus 386B is composed of a 2.8-Mb chromosome and seven plasmids. The annotation of 2875 protein-coding sequences revealed important characteristics, including several metabolic pathways, the occurrence of strain-specific genes such as an endopolygalacturonase, and the presence of mechanisms involved in tolerance towards various stress conditions. Furthermore, the low number of transposases in the genome and the absence of complete phage genomes indicate that this strain might be more genetically stable compared with other A. pasteurianus strains, which is an important advantage for the use of this strain as a functional starter culture. Comparative genome analysis with other members of the Acetobacteraceae confirmed the functional properties of A. pasteurianus 386B, such as its thermotolerant nature and unique genetic composition. CONCLUSIONS: Genome analysis of A. pasteurianus 386B provided detailed insights into the underlying mechanisms of its metabolic features, niche adaptations, and tolerance towards stress conditions. Combination of these data with previous experimental knowledge enabled an integrated, global overview of the functional characteristics of this strain. This knowledge will enable improved fermentation strategies and selection of appropriate acetic acid bacteria strains as functional starter culture for cocoa bean fermentation processes.


Assuntos
Acetobacter/genética , Acetobacter/fisiologia , Adaptação Fisiológica/genética , Cacau/microbiologia , Ecossistema , Fermentação , Genômica , Acetobacter/citologia , Acetobacter/metabolismo , Metabolismo dos Carboidratos/genética , Membrana Celular/metabolismo , Transporte de Elétrons/genética , Genoma Bacteriano/genética , Concentração de Íons de Hidrogênio , Espaço Intracelular/metabolismo , Anotação de Sequência Molecular , Oxirredutases/genética , Filogenia , Análise de Sequência , Temperatura
16.
Curr Microbiol ; 64(6): 576-80, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22441885

RESUMO

Acetobacter species are members of the α-subclass of Proteobacteria, which harbors a large number of bacteria recalcitrant to cultivation. Strain AB0220 was isolated from a superficial acetification system and preserved for 9 years by short and long time methods. Under short time preservation it was estimated that 540.54 number of generations occurred, whereas in long time preservation conditions the number of generations was 17.40. Ethanol oxidation to acetic acid was stable and confirmed, as well as acetate assimilation during long time preservation. Cultivability checks showed persistence of phenotypic traits (growth on ethanol and methanol, growth on different carbon sources and cellulose production) over the extended preservation time. 16S rRNA gene sequences analysis showed 100 % of similarity with A. pasteurianus (Accession number GQ240636). Stability of subcultures related to the culture age and subcultures frequency, tested by ERIC/PCR, confirmed the suitability of long term preservation at least over a period of 9 years.


Assuntos
Acetobacter/fisiologia , Preservação Biológica , Ácido Acético/metabolismo , Acetobacter/genética , Acetobacter/crescimento & desenvolvimento , Acetobacter/metabolismo , Carbono/metabolismo , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Etanol/metabolismo , Dados de Sequência Molecular , Oxirredução , Fenótipo , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
17.
Biochem Biophys Res Commun ; 409(1): 120-4, 2011 May 27.
Artigo em Inglês | MEDLINE | ID: mdl-21554859

RESUMO

Thermotolerant acetic acid bacteria (AAB), Acetobacter tropicalis SKU1100, can grow above 40°C. To investigate the basis of its thermotolerance, we compared the genome of A. tropicalis SKU1100 with that of mesophilic AAB strain Acetobacter pasteurianus IFO3283-01. The comparative genomic study showed that amino acid substitutions from large to small residue and Lys to Arg occur in many orthologous genes. Furthermore, comparative modeling study was carried out with the orthologous proteins between SKU1100 and IFO3283-01 strains, indicating that the number of Arg-based salt bridges increased in protein models. Since it has been reported that Arg-based salt bridges are important factor for thermo-stability of protein structure, our results strongly suggest that the increased number of Arg-based salt bridges may contributes to the thermotolerance of A. tropicalis SKU1100 (the thermo-stability of proteins in A. tropicalis SKU1100).


Assuntos
Acetobacter/fisiologia , Substituição de Aminoácidos , Arginina/química , Proteínas de Bactérias/química , Temperatura Alta , Acetobacter/genética , Sequência de Aminoácidos , Arginina/genética , Proteínas de Bactérias/genética , Genoma Bacteriano , Lisina/química , Lisina/genética , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Estabilidade Proteica
18.
Biosci Biotechnol Biochem ; 75(10): 1921-8, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21979075

RESUMO

Acetobacter tropicalis SKU1100 is a thermotolerant acetic acid bacterium that grows even at 42 °C, a much higher temperature than the limit for the growth of mesophilic strains. To elucidate the mechanism underlying the thermotolerance of this strain, we attempted to identify the genes essential for growth at high temperature by transposon (Tn10) mutagenesis followed by gene or genome analysis. Among the 4,000 Tn10-inserted mutants obtained, 32 exhibited a growth phenotype comparable to that of the parent strain at 30 °C but not at higher temperatures. We identified the insertion site of Tn10 on the chromosomes of all the mutant strains by TAIL (Thermal Asymmetric Interlaced)-PCR, and found 24 genes responsible for thermotolerance. The results also revealed a partial overlap between the genes required for thermotolerance and those required for acetic acid resistance. In addition, the origin and role of these thermotolerant genes are discussed.


Assuntos
Acetobacter/genética , Acetobacter/fisiologia , Adaptação Biológica/genética , Genes Bacterianos/genética , Genômica , Temperatura , Acetobacter/crescimento & desenvolvimento , Elementos de DNA Transponíveis/genética , Mutação , Análise de Sequência
19.
Appl Environ Microbiol ; 75(10): 3281-8, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19304818

RESUMO

Following cultivation-dependent and -independent techniques, we investigated the microbiota associated with Bactrocera oleae, one of the major agricultural pests in olive-producing countries. Bacterial 16S rRNA gene libraries and ultrastructural analyses revealed the presence of several bacterial taxa associated with this insect, among which Acetobacter tropicalis was predominant. The recent increased detection of acetic acid bacteria as symbionts of other insect model organisms, such as Anopheles stephensi (G. Favia et al., Proc. Natl. Acad. Sci. USA 104:9047-9051, 2007) or Drosophila melanogaster (C. R. Cox and M. S. Gilmore, Infect. Immun. 75:1565-1576, 2007), prompted us to investigate the association established between A. tropicalis and B. oleae. Using an A. tropicalis-specific PCR assay, the symbiont was detected in all insects tested originating from laboratory stocks or field-collected from different locations in Greece. This acetic acid bacterium was successfully established in cell-free medium, and typing analyses, carried out on a collection of isolates, revealed that different A. tropicalis strains are present in fly populations. The capability to colonize and lodge in the digestive system of both larvae and adults and in Malpighian tubules of adults was demonstrated by using a strain labeled with a green fluorescent protein.


Assuntos
Acetobacter/isolamento & purificação , Acetobacter/fisiologia , Trato Gastrointestinal/microbiologia , Simbiose , Tephritidae/microbiologia , Acetobacter/classificação , Acetobacter/genética , Animais , Técnicas de Tipagem Bacteriana , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Proteínas de Drosophila , Grécia , Larva/microbiologia , Túbulos de Malpighi/microbiologia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Homologia de Sequência
20.
Sci Total Environ ; 690: 956-964, 2019 Nov 10.
Artigo em Inglês | MEDLINE | ID: mdl-31302559

RESUMO

In present study, a potential bacterial isolate Acetobacter pasteurianus SKYAA25 was found to be very effective in the bioconversion of apple pomace to acetic acid. The isolated strain was tolerant to high ethanol concentrations of upto 14% and temperature of 42 °C. Fermentation of apple pomace alone in presence of brewing yeast produced 7.3% of bio-ethanol which was further used for acetic acid production. Apple pomace in combination with cane molasses produced 14% of bio-ethanol. The fermented bio-ethanol was used as medium for acetic acid production which yielded 52.4 g of acetic acid/100 g of DM (Dry Matter) of apple pomace. Hence, an ecofriendly process has been developed that is entirely based on microbial processing of apple pomace to produce acetic acid without involving commercial enzymes. The present bio-conversion will prove to be beneficial for utilizing food and beverage industrial waste in the production of acetic acid.


Assuntos
Ácido Acético/metabolismo , Acetobacter/fisiologia , Adaptação Fisiológica/fisiologia , Etanol/metabolismo , Fermentação , Malus/microbiologia , Saccharomyces cerevisiae , Água/metabolismo
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