Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 33
Filtrar
Mais filtros

Base de dados
Tipo de documento
Intervalo de ano de publicação
1.
J Invertebr Pathol ; 169: 107274, 2020 01.
Artigo em Inglês | MEDLINE | ID: mdl-31682798

RESUMO

The pathogenic oomycete Aphanomyces astaci, transmitted mainly by invasive North American crayfish, causes the crayfish plague, a disease mostly lethal for native European crayfish. Due to its decimating effects on native crayfish populations in the last century, A. astaci has been listed among the 100 worst invasive species. Importantly, detecting the pathogen in endangered native crayfish populations before a disease outbreak would provide a starting point in the development of effective control measures. However, current A. astaci-detection protocols either rely on degradation-prone eDNA isolated from large volumes of water or, if focused on individual animals, include killing the crayfish. We developed a non-destructive method that detects A. astaci DNA in the microbial biofilm associated with the cuticle of individual crayfish, without the need for destructive sampling. Efficiency of the new method was confirmed by PCR and qPCR and the obtained results were congruent with the traditional destructive sampling method. Additionally, we demonstrated the applicability of the method for A. astaci monitoring in natural populations. We propose that the new method should be used in future monitoring of A. astaci presence in endangered European native crayfish individuals as an alternative to eDNA-based monitoring.


Assuntos
Aphanomyces/isolamento & purificação , Astacoidea/parasitologia , Conservação dos Recursos Naturais/métodos , Interações Hospedeiro-Parasita , Parasitologia/métodos , Animais , DNA de Protozoário/análise , Espécies Introduzidas
2.
Parasitology ; 146(8): 1022-1029, 2019 07.
Artigo em Inglês | MEDLINE | ID: mdl-30975238

RESUMO

Aphanomyces astaci causes crayfish plague, which is a devastating disease of European freshwater crayfish. The likely first introduction of A. astaci into Europe was in the mid-19th century in Italy, presumably with the introduction of North American crayfish. These crayfish can carry A. astaci in their cuticle as a benign infection. Aphanomyces astaci rapidly spread across Europe causing the decline of the highly susceptible indigenous crayfish species. Random amplified polymorphic DNA-PCR analysis of A. astaci pure cultures characterized five genotype groups (A, B, C, D and E). Current A. astaci genotyping techniques (microsatellites and genotype-specific regions, both targeting nuclear DNA) can be applied directly to DNA extracted from infected cuticles but require high infection levels. Therefore, they are not suitable for genotyping benign infections in North American crayfish (carriers). In the present study, we combine bioinformatics and molecular biology techniques to develop A. astaci genotyping molecular markers that target the mitochondrial DNA, increasing the sensitivity of the genotyping tools. The assays were validated on DNA extracts of A. astaci pure cultures, crayfish tissue extractions from crayfish plague outbreaks and tissue extractions from North American carriers. We demonstrate the presence of A. astaci genotype groups A and B in UK waters.


Assuntos
Aphanomyces/isolamento & purificação , Astacoidea/microbiologia , DNA Fúngico/análise , DNA Mitocondrial/análise , Genótipo , Técnicas de Genotipagem/métodos , Animais , Aphanomyces/genética
3.
Parasitology ; 144(4): 411-418, 2017 04.
Artigo em Inglês | MEDLINE | ID: mdl-28077183

RESUMO

The crayfish plague agent, Aphanomyces astaci, has spread throughout Europe, causing a significant decline in native European crayfish. The introduction and dissemination of this pathogen is attributed to the spread of invasive North American crayfish, which can act as carriers for A. astaci. As native European crayfish often succumb to infection with A. astaci, determining the prevalence of this pathogen in non-native crayfish is vital to prioritize native crayfish populations for managed translocation. In the current study, 23 populations of invasive signal crayfish (Pacifastacus leniusculus) from the UK were tested for A. astaci presence using quantitative PCR. Altogether, 13 out of 23 (56·5%) populations were found to be infected, and pathogen prevalence within infected sites varied from 3 to 80%. Microsatellite pathogen genotyping revealed that at least one UK signal crayfish population was infected with the A. astaci genotype group B, known to include virulent strains. Based on recent crayfish distribution records and the average rate of signal crayfish population dispersal, we identified one native white-clawed crayfish (Austropotamobius pallipes) population predicted to come into contact with infected signal crayfish within 5 years. This population should be considered as a priority for translocation.


Assuntos
Aphanomyces/isolamento & purificação , Astacoidea/parasitologia , Conservação dos Recursos Naturais , Animais , Interações Hospedeiro-Parasita , Espécies Introduzidas , Prevalência , Reino Unido
4.
Phytopathology ; 107(3): 280-292, 2017 03.
Artigo em Inglês | MEDLINE | ID: mdl-27801078

RESUMO

Oomycete pathogens are commonly associated with soybean root rot and have been estimated to reduce soybean yields in the United States by 1.5 million tons on an annual basis. Limited information exists regarding the frequency and diversity of oomycete species across the major soybean-producing regions in North America. A survey was conducted across 11 major soybean-producing states in the United States and the province of Ontario, Canada. In 2011, 2,378 oomycete cultures were isolated from soybean seedling roots on a semiselective medium (CMA-PARPB) and were identified by sequencing of the internal transcribed spacer region of rDNA. Sequence results distinguished a total of 51 Pythium spp., three Phytophthora spp., three Phytopythium spp., and one Aphanomyces sp. in 2011, with Pythium sylvaticum (16%) and P. oopapillum (13%) being the most prevalent. In 2012, the survey was repeated, but, due to drought conditions across the sampling area, fewer total isolates (n = 1,038) were collected. Additionally, in 2012, a second semiselective medium (V8-RPBH) was included, which increased the Phytophthora spp. isolated from 0.7 to 7% of the total isolates. In 2012, 54 Pythium spp., seven Phytophthora spp., six Phytopythium spp., and one Pythiogeton sp. were recovered, with P. sylvaticum (14%) and P. heterothallicum (12%) being recovered most frequently. Pathogenicity and virulence were evaluated with representative isolates of each of the 84 species on soybean cv. Sloan. A seed-rot assay identified 13 and 11 pathogenic species, respectively, at 13 and 20°C. A seedling-root assay conducted at 20°C identified 43 species as pathogenic, having a significantly detrimental effect on the seedling roots as compared with the noninoculated control. A total of 15 species were pathogenic in both the seed and seedling assays. This study provides a comprehensive characterization of oomycete species present in soybean seedling roots in the major production areas in the United States and Ontario, Canada and provides a basis for disease management and breeding programs.


Assuntos
Glycine max/parasitologia , Oomicetos/isolamento & purificação , Doenças das Plantas/parasitologia , Aphanomyces/classificação , Aphanomyces/isolamento & purificação , Aphanomyces/patogenicidade , Geografia , Oomicetos/classificação , Oomicetos/patogenicidade , Filogenia , Phytophthora/classificação , Phytophthora/isolamento & purificação , Phytophthora/patogenicidade , Doenças das Plantas/prevenção & controle , Raízes de Plantas/parasitologia , Pythium/classificação , Pythium/isolamento & purificação , Pythium/patogenicidade , Plântula/parasitologia , Sementes/parasitologia , Virulência
5.
Phytopathology ; 107(3): 293-304, 2017 03.
Artigo em Inglês | MEDLINE | ID: mdl-27841963

RESUMO

Soybean (Glycine max (L.) Merr.) is produced across a vast swath of North America, with the greatest concentration in the Midwest. Root rot diseases and damping-off are a major concern for production, and the primary causal agents include oomycetes and fungi. In this study, we focused on examination of oomycete species distribution in this soybean production system and how environmental and soil (edaphic) factors correlate with oomycete community composition at early plant growth stages. Using a culture-based approach, 3,418 oomycete isolates were collected from 11 major soybean-producing states and most were identified to genus and species using the internal transcribed spacer region of the ribosomal DNA. Pythium was the predominant genus isolated and investigated in this study. An ecology approach was taken to understand the diversity and distribution of oomycete species across geographical locations of soybean production. Metadata associated with field sample locations were collected using geographical information systems. Operational taxonomic units (OTU) were used in this study to investigate diversity by location, with OTU being defined as isolate sequences with 97% identity to one another. The mean number of OTU ranged from 2.5 to 14 per field at the state level. Most OTU in this study, classified as Pythium clades, were present in each field in every state; however, major differences were observed in the relative abundance of each clade, which resulted in clustering of states in close proximity. Because there was similar community composition (presence or absence) but differences in OTU abundance by state, the ordination analysis did not show strong patterns of aggregation. Incorporation of 37 environmental and edaphic factors using vector-fitting and Mantel tests identified 15 factors that correlate with the community composition in this survey. Further investigation using redundancy analysis identified latitude, longitude, precipitation, and temperature as factors that contribute to the variability observed in community composition. Soil parameters such as clay content and electrical conductivity also affected distribution of oomycete species. The present study suggests that oomycete species composition across geographical locations of soybean production is affected by a combination of environmental and edaphic conditions. This knowledge provides the basis to understand the ecology and distribution of oomycete species, especially those able to cause diseases in soybean, providing cues to develop management strategies.


Assuntos
Variação Genética , Glycine max/parasitologia , Oomicetos/isolamento & purificação , Doenças das Plantas/parasitologia , Aphanomyces/classificação , Aphanomyces/isolamento & purificação , Aphanomyces/patogenicidade , Ecologia , Meio Ambiente , Sequenciamento de Nucleotídeos em Larga Escala , Oomicetos/classificação , Oomicetos/patogenicidade , Phytophthora/classificação , Phytophthora/isolamento & purificação , Phytophthora/patogenicidade , Doenças das Plantas/prevenção & controle , Raízes de Plantas/parasitologia , Pythium/classificação , Pythium/isolamento & purificação , Pythium/patogenicidade , Plântula/parasitologia , Sementes/parasitologia , Análise de Sequência de DNA , Virulência
6.
Can J Microbiol ; 63(9): 769-779, 2017 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-28576113

RESUMO

Metagenomic analysis of oomycetes through deep amplicon sequencing has been conducted primarily using the ITS6-ITS7 primer set that targets the ITS1 region. While this primer set shows a perfect match to most oomycete taxa, ITS7 contains 3 mismatches to the corresponding binding site of plant pathogens within the genus Aphanomyces. Polymerase chain reaction (PCR) efficiency differs for taxa with uneven primer matching characteristics, which may explain why previous studies have detected this genus at low abundance. To overcome the impact of these mismatches on PCR sensitivity, the mismatched nucleotides were replaced with degenerate nucleotides. Oomycete communities from 35 soil samples collected from asymptomatic and root rot diseased sites in pea fields across Alberta were analyzed simultaneously using ITS6-ITS7 and ITS6-ITS7-a.e. (modified version of ITS7) primer sets on 1 Illumina MiSeq run. The number of high-quality reads obtained by ITS6-ITS7-a.e. was more than twice that of ITS6-ITS7. The relative abundance of Pythium spp. was reduced and Aphanomyces spp. increased. Aphanomyces cf. cladogamus and Aphanomyces euteiches were the second and third most abundant species, respectively, in the pea rhizosphere using the ITS7-a.e. primer, but were rare using the ITS7 primer. These results indicate that use of ITS7-a.e. provides a more accurate picture of oomycete communities than ITS7 by enhancing PCR sensitivity to Aphanomyces.


Assuntos
Aphanomyces/genética , Primers do DNA/genética , Pisum sativum/parasitologia , Doenças das Plantas/parasitologia , Pythium/isolamento & purificação , Aphanomyces/classificação , Aphanomyces/isolamento & purificação , Sequenciamento de Nucleotídeos em Larga Escala , Raízes de Plantas/parasitologia , Reação em Cadeia da Polimerase , Pythium/classificação , Pythium/genética
7.
J Invertebr Pathol ; 149: 15-20, 2017 10.
Artigo em Inglês | MEDLINE | ID: mdl-28716442

RESUMO

Aphanomyces astaci infection is the cause of crayfish plague in European crayfish. Here the virulence of an A. astaci As strain isolated from apparently healthy stone crayfish (Austropotamobius torrentium) from Slovenia was compared to that of the Psl-Puujärvi A. astaci isolate in 3 crayfish species: noble crayfish (Astacus astacus), signal crayfish (Pacifastacus leniusculus) from Finland and stone crayfish from Slovenia. All 3 crayfish species were challenged with PsI-Puujärvi A. astaci and succumbed to crayfish plague, with both noble crayfish and stone crayfish showing 100% mortality, while 25% of the signal crayfish died during the challenge. In comparison, the As-Slovenia A. astaci isolate was pathogenic for noble crayfish but not for signal crayfish or stone crayfish. This finding suggests that A. astaci virulence could be species specific and a strain from latent A. astaci infection in one native European crayfish species could be detrimental to other native European crayfish species.


Assuntos
Aphanomyces/isolamento & purificação , Aphanomyces/patogenicidade , Astacoidea/microbiologia , Infecções/microbiologia , Animais , Virulência
9.
Phytopathology ; 104(10): 1138-47, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-24835221

RESUMO

Aphanomyces euteiches is a widespread oomycete pathogen causing root rot in a wide range of leguminous crops. Losses can reach up to 100% for pea culture and there is currently no registered pesticide for its control. Crop management remains the most efficient tool to control root rot, and avoidance of infested soil seems to be the optimal solution. A test was developed to identify fields suitable for pea crops, consisting of the determination of the inoculum potential of soil using baiting plants. A new rapid, specific, and sensitive molecular method is described allowing the quantification of less than 10 oospores per gram of soil. This challenge is achieved by a real-time polymerase chain reaction procedure targeting internal transcribed spacer 1 from the ribosomal DNA operons. A preliminary study based on typical soils from northwestern France demonstrated that the A. euteiches oospore density in soil is related to the inoculum potential. Furthermore, this method has proved sensitive enough to accurately study the influence of biotic factors that may govern the actual emergence of root rot.


Assuntos
Aphanomyces/isolamento & purificação , Pisum sativum/parasitologia , Doenças das Plantas/parasitologia , Microbiologia do Solo , Aphanomyces/genética , DNA Espaçador Ribossômico/genética , França , Raízes de Plantas/parasitologia , Reação em Cadeia da Polimerase em Tempo Real , Reprodutibilidade dos Testes
10.
Parasitology ; 140(6): 792-801, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23425502

RESUMO

The crayfish plague pathogen, Aphanomyces astaci, is one of the most serious threats to indigenous European crayfish species. The North American invasive spiny-cheek crayfish, Orconectes limosus, is an important source of this pathogen in central and western Europe. We evaluated potential changes in A. astaci spore release rate from infected individuals of this species by experiments investigating the pathogen transmission to susceptible noble crayfish, Astacus astacus. We filtered defined volumes of water regularly to quantify spore concentration, and sampled crayfish tissues at the end of the experiment. The filters and tissues were then tested for the presence of A. astaci DNA by species-specific quantitative PCR. Additionally, we tested the efficiency of horizontal transmission to apparently uninfected O. limosus. The experiments confirmed that A. astaci can be transmitted to susceptible crayfish during intermoult periods, and that the pathogen was more frequently detected in noble crayfish recipients than in American ones. The pathogen spore concentrations substantially varied in time, and significantly increased during moulting of infected hosts. Our study strengthens the evidence that although the likelihood of crayfish plague transmission by water transfer from localities with infected American crayfish might increase when these are moulting or dying, no time-periods can be proclaimed safe.


Assuntos
Aphanomyces/fisiologia , Astacoidea/parasitologia , Animais , Aphanomyces/genética , Aphanomyces/isolamento & purificação , Reação em Cadeia da Polimerase em Tempo Real , Especificidade da Espécie , Esporos
11.
Dis Aquat Organ ; 98(1): 85-94, 2012 Feb 17.
Artigo em Inglês | MEDLINE | ID: mdl-22422132

RESUMO

Native European crayfish, such as Astacus leptodactylus, are threatened, among other factors, by the crayfish plague agent Aphanomyces astaci, dispersed by invasive North American crayfish. Two of these invaders, Pacifastacus leniusculus and Orconectes limosus, have extended their distribution in the River Danube catchment; the latter was detected for the first time in Romania in 2008. We monitored, at monthly intervals for over 2 yr, occurrence of native A. leptodactylus and invasive O. limosus at 6 sites on the Romanian Danube and checked for the invasive species in 4 of its tributaries. Between January 2009 and March 2011, the relative abundances of O. limosus steadily increased with time, while the native A. leptodactylus dramatically decreased in abundance. O. limosus expanded downstream at a rate of ca. 15 km yr-1; in August 2011, it was already present in the upper 105 km of the Romanian Danube. An agent-specific real-time PCR analyses demonstrated the presence of A. astaci DNA in at least 32% of the analysed invasive (n = 71) and 41% of the native (n = 49) crayfish coexisting in the Danube. Furthermore, A. astaci was also detected in A. leptodactylus captured about 70 km downstream of the O. limosus invasion front (at the time of sampling). Assuming a steady rate of expansion, O. limosus may invade the sensitive Danube delta area in the mid-2060s, even without long-distance dispersal. The crayfish plague agent, however, may reach the delta substantially earlier, through dispersal downstream among populations of native crayfish.


Assuntos
Aphanomyces/isolamento & purificação , Astacoidea/microbiologia , Rios , Animais , Romênia
12.
Dis Aquat Organ ; 97(2): 113-25, 2011 Dec 06.
Artigo em Inglês | MEDLINE | ID: mdl-22303628

RESUMO

We applied quantitative TaqMan minor groove binder real-time polymerase chain reaction (PCR) on DNA isolates from soft abdominal cuticle of 460 North American crayfish Orconectes limosus and Pacifastacus leniusculus, previously tested for Aphanomyces astaci presence by conventional semi-nested PCR. Both approaches target the internal transcribed spacers of the pathogen nuclear ribosomal DNA, but apply different specific sequence motifs and technologies. The real-time PCR approach seems to provide higher sensitivity; the number of crayfish that tested positive increased from 23 to 32%, and 10 additional crayfish populations were indicated as hosting the disease agent. However, the vast majority of newly recorded positives contained very low agent levels, from 5 to 50 PCR-forming units. An isolate producing a false positive result by the semi-nested PCR (apparently undescribed Aphanomyces related to A. astaci) remained negative using the real-time PCR. The present study shows that previous results based on the semi-nested PCR were not substantially influenced by false positives but might have suffered from some false negatives at low agent levels. Combining alternative methods may therefore provide more reliable conclusions on the pathogen's presence. Further, we found positive correlation between the prevalence of infection carriers in American crayfish populations and the average amounts of A. astaci DNA detected in infected local crayfish individuals.


Assuntos
Aphanomyces/fisiologia , Astacoidea/parasitologia , Reação em Cadeia da Polimerase em Tempo Real/métodos , Animais , Aphanomyces/genética , Aphanomyces/isolamento & purificação , DNA Intergênico/genética , Europa (Continente)
13.
Dis Aquat Organ ; 88(2): 169-75, 2010 Jan 25.
Artigo em Inglês | MEDLINE | ID: mdl-20225678

RESUMO

Epizootic ulcerative syndrome (EUS) caused by the oomycete Aphanomyces invadans is an invasive, opportunistic disease of both freshwater and estuarine fishes. Originally documented as the cause of mycotic granulomatosis of ornamental fishes in Japan and as the cause of EUS of fishes in southeast Asia and Australia, this pathogen is also present in estuaries and freshwater bodies of the Atlantic and gulf coasts of the USA. We describe a mass mortality event of 343 captive juvenile bullseye snakehead Channa marulius collected from freshwater canals in Miami-Dade County, Florida. Clinical signs appeared within the first 2 d of captivity and included petechiae, ulceration, erratic swimming, and inappetence. Histological examination revealed hyphae invading from the skin lesions deep into the musculature and internal organs. Species identification was confirmed using a species-specific PCR assay. Despite therapeutic attempts, 100% mortality occurred. This represents the first documented case of EUS in bullseye snakehead fish collected from waters in the USA. Future investigation of the distribution and prevalence of A. invadans within the bullseye snakehead range in south Florida may give insight into this pathogen-host system.


Assuntos
Aphanomyces/isolamento & purificação , Dermatite/veterinária , Doenças dos Peixes/microbiologia , Infecções/veterinária , Perciformes , Animais , Anti-Infecciosos/uso terapêutico , Dermatite/tratamento farmacológico , Dermatite/epidemiologia , Dermatite/microbiologia , Doenças dos Peixes/tratamento farmacológico , Doenças dos Peixes/epidemiologia , Florida/epidemiologia , Infecções/tratamento farmacológico , Infecções/epidemiologia , Infecções/microbiologia , Úlcera Cutânea/tratamento farmacológico , Úlcera Cutânea/microbiologia , Úlcera Cutânea/veterinária
14.
Fungal Genet Biol ; 46(5): 365-76, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19236935

RESUMO

Molecular phylogenetic relationships among 12 species of Aphanomyces de Bary (Oomycetes) were analyzed based on 108 ITS sequences of nuclear rDNA. Sequences used in the analyses belonged to the major species currently available in pure culture and GenBank. Bayesian, maximum likelihood, and maximum parsimony analyses support that Aphanomyces constitutes a monophyletic group. Three independent lineages were found: (i) plant parasitic, (ii) animal parasitic, and (iii) saprotrophic or opportunistic parasitic. Sexual reproduction appeared to be critical in plant parasites for survival in soil environments while asexual reproduction seemed to be advantageous for exploiting specialization in animal parasitism. Repeated zoospore emergence seems to be an advantageous property for both plant and animal parasitic modes of life. Growth in unspecific media was generally faster in saprotrophs compared with parasitic species. A number of strains and GenBank sequences were found to be misidentified. It was confirmed molecularly that Aphanomyces piscicida and Aphanomyces invadans appear to be conspecific, and found that Aphanomyces iridis and Aphanomyces euteiches are closely related, if not the same, species. This study has shown a clear evolutionary separation between Aphanomyces species that are plant parasites and those that parasitize animals. Saprotrophic or opportunistic species formed a separate evolutionary lineage except Aphanomyces stellatus whose evolutionary position has not yet been resolved.


Assuntos
Aphanomyces/classificação , Aphanomyces/isolamento & purificação , Animais , Aphanomyces/genética , Aphanomyces/crescimento & desenvolvimento , Análise por Conglomerados , DNA Fúngico/química , DNA Fúngico/genética , DNA Espaçador Ribossômico/química , DNA Espaçador Ribossômico/genética , Dados de Sequência Molecular , Doenças Parasitárias em Animais/microbiologia , Filogenia , Plantas/parasitologia , Análise de Sequência de DNA , Microbiologia do Solo , Esporos Fúngicos/crescimento & desenvolvimento
15.
BMC Microbiol ; 9: 184, 2009 Aug 31.
Artigo em Inglês | MEDLINE | ID: mdl-19719847

RESUMO

BACKGROUND: The oomycete Aphanomyces astaci is regarded as the causative agent of crayfish plague and represents an evident hazard for European crayfish species. Native crayfish populations infected with this pathogen suffer up to 100% mortality. The existence of multiple transmission paths necessitates the development of a reliable, robust and efficient test to detect the pathogen. Currently, A. astaci is diagnosed by a PCR-based assay that suffers from cross-reactivity to other species. We developed an alternative closed-tube assay for A. astaci, which achieves robustness through simultaneous amplification of multiple functionally constrained genes. RESULTS: Two novel constitutively expressed members of the glycosyl hydrolase (GH18) gene family of chitinases were isolated from the A. astaci strain Gb04. The primary amino acid sequence of these chitinase genes, termed CHI2 and CHI3, is composed of an N-terminal signal peptide directing the post-translational transport of the protein into the extracellular space, the catalytic GH18 domain, a proline-, serine-, and threonine-rich domain and a C-terminal cysteine-rich putative chitin-binding site. The A. astaci mycelium grown in a pepton-glucose medium showed significant temporal changes in steady-state CHI2 and CHI3 mRNA amounts indicating functional constraint. Their different temporal occurrence with maxima at 48 and 24 hours of incubation for CHI2 and CHI3, respectively, is in accordance with the multifunctionality of GH18 family members. To identify A. astaci-specific primer target sites in these novel genes, we determined the partial sequence homologs in the related oomycetes A. frigidophilus, A. invadans, A. helicoides, A. laevis, A. repetans, Achlya racemosa, Leptolegnia caudata, and Saprolegnia parasitica, as well as in the relevant fungi Fusarium solani and Trichosporon cutaneum. An A. astaci-specific primer pair targeting the novel genes CHI2 and CHI3 as well as CHI1 - a third GH18 family member - was multiplexed with primers targeting the 5.8S rRNA used as an endogenous control. A species was typed unambiguously as A. astaci if two peaks were concomitantly detected by melting curve analysis (MCA). For sensitive detection of the pathogen, but also for quantification of agent levels in susceptible crayfish and carrier crayfish, a TaqMan-probe based real-time PCR (qPCR) assay was developed. It targets the same chitinase genes and allows quantification down to 25 target sequences. CONCLUSION: The simultaneous qualitative detection of multiple sequences by qPCR/MCA represents a promising approach to detect species with elevated levels of genetic variation and/or limited available sequence information. The homogenous closed-tube format, reduced detection time, higher specificity, and the considerably reduced chance of false negative detection achieved by targeting multiple genes (CHI1, CHI2, CHI3, and the endogenous control) at least two of which are subject to high functional constraint, are the major advantages of this multiplex assay compared to other diagnostic methods. Sensitive quantification achieved with TaqMan qPCR facilitates to monitor infection status and pathogen distribution in different tissues and can help prevent disease transmission.


Assuntos
Proteínas de Algas/genética , Aphanomyces/genética , Aphanomyces/isolamento & purificação , Astacoidea/microbiologia , Quitinases/genética , Proteínas de Algas/metabolismo , Sequência de Aminoácidos , Animais , Aphanomyces/classificação , Aphanomyces/enzimologia , Quitinases/metabolismo , DNA de Algas/genética , DNA Espaçador Ribossômico/genética , Dados de Sequência Molecular , Filogenia , Reação em Cadeia da Polimerase/métodos , Análise de Sequência de DNA , Fatores de Tempo
16.
Conserv Biol ; 23(5): 1204-13, 2009 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-19459897

RESUMO

In Central Europe invasive North American crayfishes are carriers of the oomycete Aphanomyces astaci, which causes crayfish plague. This lethal disease currently represents one of the major threats to native European crayfishes. We used molecular methods-species--specific amplification and sequencing of the pathogen DNA--to investigate the prevalence of individuals latently infected with A. astaci in 28 populations of two invasive American crayfish species (6 of the signal crayfish [Pacifastacus leniusculus] and 22 of the spiny-cheek crayfish [Orconectes limosus]) in the Czech Republic. The pathogen occurred in 17 investigated populations. We recorded a high variation in positive reactions, ranging from 0% to 100%, in populations of O. limosus. In P. leniusculus, however, only one individual out of 124 tested positive for the pathogen. There was a clear relationship between the water body type and pathogen prevalence in O. limosus. Infection ratios in isolated standing waters were usually low, whereas in running waters, pathogen prevalence often exceeded 50%. Other evaluated characteristics of potential plague pathogen carriers (size, sex, and the presence of melanized spots in the cuticle) seemed to be unrelated to infection. Our data suggest that in contrast to other European countries, O. limosus seems to be the primary reservoir of crayfish plague in the Czech Republic. Although all populations of alien American crayfishes may be potential sources of infections and should be managed as such, knowledge on the prevalence of the plague pathogen at various localities may allow managers to focus conservation efforts on the most directly endangered populations of native crayfishes.


Assuntos
Aphanomyces/isolamento & purificação , Astacoidea/parasitologia , Interações Hospedeiro-Parasita , Animais , Sequência de Bases , República Tcheca , Primers do DNA , Ecossistema , Reação em Cadeia da Polimerase
17.
Vet Microbiol ; 137(1-2): 146-55, 2009 May 28.
Artigo em Inglês | MEDLINE | ID: mdl-19201113

RESUMO

Here we present the development and first validation of a TaqMan minor groove binder (MGB) real-time polymerase chain reaction (RT-PCR) method for quantitative and highly specific detection of Aphanomyces astaci, the causative agent of crayfish plague. The assay specificity was experimentally assessed by testing against DNA representative of closely related oomycetes, and theoretically assessed by additional sequence similarity analyses comparing the primers and probe sequences to available sequences in EMBL/GenBank. The target of the assay is a 59 bp unique sequence motif of A. astaci found in the internal transcribed spacer 1 of the nuclear ribosomal gene cluster. A standard curve for quantification was established by setting up a four-fold dilution series with genomic A. astaci DNA. The absolute limit of detection (LOD(abs)), defined as the lowest concentration yielding a false negative probability<5% was found to be approximately 5 PCR forming units (PFU

Assuntos
Aphanomyces/isolamento & purificação , Astacoidea/microbiologia , Reação em Cadeia da Polimerase/métodos , Animais , Aphanomyces/genética , DNA/genética , DNA Espaçador Ribossômico/genética , Reprodutibilidade dos Testes , Sensibilidade e Especificidade
18.
Bull Environ Contam Toxicol ; 83(4): 474-8, 2009 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-19565173

RESUMO

This study was conducted to determine environmental and climatic factors associated with Epizootic Ulcerative Syndrome (EUS) in fish in the Zambezi floodplains. EUS is a fish disease that causes economic loses to the fishing industry. Streambed colour in affected water was rusty-, reddish- or yellowish- brown and pH 4.5-6.0 while pH of non affected water was 7.2. The rusty-brown precipitate on fish gills was positive for Prussian blue iron stain. Therefore, predisposing factors for EUS in the Zambezi floodplains were the acidification of ground water during drought years and eventual contamination of surface water during the floods of 2006/2007.


Assuntos
Clima , Doenças dos Peixes/etiologia , Peixes , Úlcera Cutânea/veterinária , Aeromonas/isolamento & purificação , Animais , Aphanomyces/isolamento & purificação , Surtos de Doenças/veterinária , Meio Ambiente , Monitoramento Ambiental , Inundações , Brânquias/patologia , Infecções por Bactérias Gram-Negativas/etiologia , Infecções por Bactérias Gram-Negativas/veterinária , Concentração de Íons de Hidrogênio , Infecções/etiologia , Infecções/veterinária , Úlcera Cutânea/etiologia , Úlcera Cutânea/microbiologia , Síndrome , Zâmbia
19.
Vet Rec ; 163(21): 629-31, 2008 Nov 22.
Artigo em Inglês | MEDLINE | ID: mdl-19029110

RESUMO

In late 2006, diseased fish of a variety of species began to appear in the Chobe and upper Zambezi rivers in southern Africa. In April 2007, investigations showed that the levels of pesticides and heavy metals in the tissues of the fish were very low, discounting pollution as an underlying cause for the disease. However, histological evidence showed that the disease closely resembled the epizootic ulcerative syndrome caused by the oomycete Aphanomyces invadans, a serious aquatic pathogen that has been isolated from freshwater and estuarine fish in Japan, south-east Asia, Australia and the usa since the 1970s, but not previously recorded in Africa.


Assuntos
Aphanomyces/isolamento & purificação , Doenças dos Peixes/epidemiologia , Infecções/veterinária , Dermatopatias/veterinária , África , Animais , Peixes , Infecções/epidemiologia , Rios , Dermatopatias/microbiologia
20.
Transbound Emerg Dis ; 65(6): 1648-1656, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-29877061

RESUMO

The first outbreak on the African continent of infection with Aphanomyces invadans (the causative agent of epizootic ulcerative syndrome) in fish was confirmed in the Chobe-Zambezi rivers in 2007. The emergence of massive outbreaks of infection with A. invadans in multiple fish species exposed serious aquatic biosecurity challenges in the Southern African region. This study investigated the incursion of infection with A. invadans in fish from the main aquatic ecosystems of Zimbabwe from 2012 to 2015 using data obtained from the Department of Livestock and Veterinary Services, Zimbabwe. In some outbreaks, fish samples were collected and tested at the University of Zambia, for confirmation by histopathology and species-specific PCR. The infection was first confirmed at Darwendale water impoundment (Mashonaland West Province) in 2012, followed by Matabeleland South Province at Mtshabezi water impoundment and Nkankezi River (both 2013). An apparent southward spread continued in 2014, with virgin outbreaks at Ntalale water impoundment (Matabeleland South Province) and Mwenezi River in Midlands Province. In 2015, inland incursion was confirmed at Dutchman's Pool in Midlands Province and further north-west at the Sanyati River Basin in Lake Kariba (Mashonaland West Province). In all outbreaks, infection with A. invadans was confirmed in seven fish species, namely the African sharptooth catfish (Clarias gariepinus, Burchell, 1822), blunt-toothed African catfish (Clarias ngamensis Castelnau, 1861), yellow belly bream (Serranochromis robustus Gunther, 1864), straight fin barb (Enteromius paludinosus Peters, 1852), dashtail barb (Enteromius poechii Steindachner, 1911), large-mouth bass (Micropterus salmoides Lac'epe'de, 1802) and the three-spot tilapia (Oreochromis andersonii Castelnau, 1861). Cases were most common in the African sharptooth catfish, with mortalities more pronounced in young fish of all species. The results suggested a gradual emergence of an intractable infection with A. invadans in fish in the main aquatic ecosystems of Zimbabwe, which may have negative impact on biodiversity conservation and aquaculture.


Assuntos
Aphanomyces/isolamento & purificação , Doenças Transmissíveis Emergentes/veterinária , Surtos de Doenças/veterinária , Doenças dos Peixes/epidemiologia , Animais , Doenças Transmissíveis Emergentes/epidemiologia , Doenças Transmissíveis Emergentes/microbiologia , Ecossistema , Doenças dos Peixes/microbiologia , Pesqueiros , Peixes , Hidrobiologia , Rios , Especificidade da Espécie , Zimbábue/epidemiologia
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA