Vivaldi: visualization and validation of biomacromolecular NMR structures from the PDB.
Proteins
; 81(4): 583-91, 2013 Apr.
Article
em En
| MEDLINE
| ID: mdl-23180575
ABSTRACT
We describe Vivaldi (VIsualization and VALidation DIsplay; http//pdbe.org/vivaldi), a web-based service for the analysis, visualization, and validation of NMR structures in the Protein Data Bank (PDB). Vivaldi provides access to model coordinates and several types of experimental NMR data using interactive visualization tools, augmented with structural annotations and model-validation information. The service presents information about the modeled NMR ensemble, validation of experimental chemical shifts, residual dipolar couplings, distance and dihedral angle constraints, as well as validation scores based on empirical knowledge and databases. Vivaldi was designed for both expert NMR spectroscopists and casual non-expert users who wish to obtain a better grasp of the information content and quality of NMR structures in the public archive.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Pseudomonas aeruginosa
/
Proteínas de Bactérias
/
Software
/
Helicobacter pylori
/
Ressonância Magnética Nuclear Biomolecular
/
Bases de Dados de Proteínas
Tipo de estudo:
Prognostic_studies
Idioma:
En
Revista:
Proteins
Assunto da revista:
BIOQUIMICA
Ano de publicação:
2013
Tipo de documento:
Article
País de afiliação:
Reino Unido