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Freiburg RNA tools: a central online resource for RNA-focused research and teaching.
Raden, Martin; Ali, Syed M; Alkhnbashi, Omer S; Busch, Anke; Costa, Fabrizio; Davis, Jason A; Eggenhofer, Florian; Gelhausen, Rick; Georg, Jens; Heyne, Steffen; Hiller, Michael; Kundu, Kousik; Kleinkauf, Robert; Lott, Steffen C; Mohamed, Mostafa M; Mattheis, Alexander; Miladi, Milad; Richter, Andreas S; Will, Sebastian; Wolff, Joachim; Wright, Patrick R; Backofen, Rolf.
Afiliação
  • Raden M; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
  • Ali SM; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
  • Alkhnbashi OS; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
  • Busch A; Institute of Molecular Biology (IMB), Ackermannweg 4, 55128 Mainz, Germany.
  • Costa F; Department of Computer Science, University of Exeter, Exeter EX4 4QF, UK.
  • Davis JA; Coreva Scientific, Kaiser-Joseph-Str 198-200, 79098 Freiburg, Germany.
  • Eggenhofer F; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
  • Gelhausen R; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
  • Georg J; Genetics and Experimental Bioinformatics, University of Freiburg, Schänzlestraße 1, 79104 Freiburg, Germany.
  • Heyne S; Max Planck Institute of Immunobiology and Epigenetics, Stübeweg 51, 79108 Freiburg, Germany.
  • Hiller M; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
  • Kundu K; Max Planck Institute for the Physics of Complex Systems, Dresden, Germany.
  • Kleinkauf R; Department of Haematology, University of Cambridge, Cambridge Biomedical Campus, Long Road, Cambridge CB2 0PT, UK.
  • Lott SC; Department of Human Genetics, The Wellcome Trust Sanger Institute, Hinxton Cambridge CB10 1HH, UK.
  • Mohamed MM; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
  • Mattheis A; Genetics and Experimental Bioinformatics, University of Freiburg, Schänzlestraße 1, 79104 Freiburg, Germany.
  • Miladi M; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
  • Richter AS; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
  • Will S; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
  • Wolff J; Genedata AG, Margarethenstrasse 38, 4053 Basel, Switzerland.
  • Wright PR; Theoretical Biochemistry Group, University of Vienna, Währingerstraße 17, 1090 Vienna, Austria.
  • Backofen R; Bioinformatics, Computer Science, University of Freiburg, Georges-Koehler-Allee 106, 79110 Freiburg, Germany.
Nucleic Acids Res ; 46(W1): W25-W29, 2018 07 02.
Article em En | MEDLINE | ID: mdl-29788132
ABSTRACT
The Freiburg RNA tools webserver is a well established online resource for RNA-focused research. It provides a unified user interface and comprehensive result visualization for efficient command line tools. The webserver includes RNA-RNA interaction prediction (IntaRNA, CopraRNA, metaMIR), sRNA homology search (GLASSgo), sequence-structure alignments (LocARNA, MARNA, CARNA, ExpaRNA), CRISPR repeat classification (CRISPRmap), sequence design (antaRNA, INFO-RNA, SECISDesign), structure aberration evaluation of point mutations (RaSE), and RNA/protein-family models visualization (CMV), and other methods. Open education resources offer interactive visualizations of RNA structure and RNA-RNA interaction prediction as well as basic and advanced sequence alignment algorithms. The services are freely available at http//rna.informatik.uni-freiburg.de.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / RNA / Sequência de Bases / Internet Tipo de estudo: Prognostic_studies Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2018 Tipo de documento: Article País de afiliação: Alemanha
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / RNA / Sequência de Bases / Internet Tipo de estudo: Prognostic_studies Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2018 Tipo de documento: Article País de afiliação: Alemanha