Two Methods for Mapping and Visualizing Associated Data on Phylogeny Using Ggtree.
Mol Biol Evol
; 35(12): 3041-3043, 2018 12 01.
Article
em En
| MEDLINE
| ID: mdl-30351396
ABSTRACT
Ggtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after reordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context. Ggtree is available from http//www.bioconductor.org/packages/ggtree.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Filogenia
/
Software
/
Técnicas Genéticas
Tipo de estudo:
Evaluation_studies
/
Risk_factors_studies
Idioma:
En
Revista:
Mol Biol Evol
Assunto da revista:
BIOLOGIA MOLECULAR
Ano de publicação:
2018
Tipo de documento:
Article
País de afiliação:
China