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Evolthon: A community endeavor to evolve lab evolution.
Kaminski Strauss, Sivan; Schirman, Dvir; Jona, Ghil; Brooks, Aaron N; Kunjapur, Aditya M; Nguyen Ba, Alex N; Flint, Alice; Solt, Andras; Mershin, Andreas; Dixit, Atray; Yona, Avihu H; Csörgo, Bálint; Busby, Bede Phillip; Hennig, Bianca P; Pál, Csaba; Schraivogel, Daniel; Schultz, Daniel; Wernick, David G; Agashe, Deepa; Levi, Dikla; Zabezhinsky, Dmitry; Russ, Dor; Sass, Ehud; Tamar, Einat; Herz, Elad; Levy, Emmanuel D; Church, George M; Yelin, Idan; Nachman, Iftach; Gerst, Jeffrey E; Georgeson, Joseph M; Adamala, Katarzyna P; Steinmetz, Lars M; Rübsam, Marc; Ralser, Markus; Klutstein, Michael; Desai, Michael M; Walunjkar, Nilima; Yin, Ning; Aharon Hefetz, Noa; Jakimo, Noah; Snitser, Olga; Adini, Omri; Kumar, Prashant; Soo Hoo Smith, Rachel; Zeidan, Razi; Hazan, Ronen; Rak, Roni; Kishony, Roy; Johnson, Shannon.
Afiliação
  • Kaminski Strauss S; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
  • Schirman D; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
  • Jona G; Department of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.
  • Brooks AN; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.
  • Kunjapur AM; Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.
  • Nguyen Ba AN; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America.
  • Flint A; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
  • Solt A; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
  • Mershin A; Massachusetts Institute of Technology, Center for Bits and Atoms, Cambridge, Massachusetts, United States of America.
  • Dixit A; Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.
  • Yona AH; Harvard-MIT Division of Health Sciences and Technology, Cambridge, Massachusetts, United States of America.
  • Csörgo B; Physics of Living Systems, Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America.
  • Busby BP; Institute of Biochemistry, Biological Research Centre of the Hungarian Academy of Sciences, Szeged, Hungary.
  • Hennig BP; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.
  • Pál C; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge, United Kingdom.
  • Schraivogel D; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.
  • Schultz D; Institute of Biochemistry, Biological Research Centre of the Hungarian Academy of Sciences, Szeged, Hungary.
  • Wernick DG; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.
  • Agashe D; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, United States of America.
  • Levi D; Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.
  • Zabezhinsky D; National Centre for Biological Sciences, Bangalore, India.
  • Russ D; Department of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.
  • Sass E; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
  • Tamar E; Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
  • Herz E; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
  • Levy ED; Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
  • Church GM; Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.
  • Yelin I; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
  • Nachman I; Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America.
  • Gerst JE; Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
  • Georgeson JM; Department of Biochemistry and Molecular Biology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel.
  • Adamala KP; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
  • Steinmetz LM; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.
  • Rübsam M; University of Minnesota, Minneapolis, Minnesota, United States of America.
  • Ralser M; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.
  • Klutstein M; Stanford Genome Technology Center, Stanford University, Palo Alto, California, United States of America.
  • Desai MM; Department of Genetics, Stanford University School of Medicine, Stanford, California, United States of America.
  • Walunjkar N; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.
  • Yin N; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
  • Aharon Hefetz N; The Molecular Biology of Metabolism laboratory, The Francis Crick Institute, London, United Kingdom.
  • Jakimo N; Department of Biochemistry, Charitè University Medicine, Berlin, Germany.
  • Snitser O; Faculty of Dental Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel.
  • Adini O; Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America.
  • Kumar P; Department of Physics, Harvard University, Cambridge, Massachusetts, United States of America.
  • Soo Hoo Smith R; National Centre for Biological Sciences, Bangalore, India.
  • Zeidan R; Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
  • Hazan R; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
  • Rak R; Massachusetts Institute of Technology, Center for Bits and Atoms, Cambridge, Massachusetts, United States of America.
  • Kishony R; Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel.
  • Johnson S; Faculty of Dental Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel.
PLoS Biol ; 17(3): e3000182, 2019 03.
Article em En | MEDLINE | ID: mdl-30925180
ABSTRACT
In experimental evolution, scientists evolve organisms in the lab, typically by challenging them to new environmental conditions. How best to evolve a desired trait? Should the challenge be applied abruptly, gradually, periodically, sporadically? Should one apply chemical mutagenesis, and do strains with high innate mutation rate evolve faster? What are ideal population sizes of evolving populations? There are endless strategies, beyond those that can be exposed by individual labs. We therefore arranged a community challenge, Evolthon, in which students and scientists from different labs were asked to evolve Escherichia coli or Saccharomyces cerevisiae for an abiotic stress-low temperature. About 30 participants from around the world explored diverse environmental and genetic regimes of evolution. After a period of evolution in each lab, all strains of each species were competed with one another. In yeast, the most successful strategies were those that used mating, underscoring the importance of sex in evolution. In bacteria, the fittest strain used a strategy based on exploration of different mutation rates. Different strategies displayed variable levels of performance and stability across additional challenges and conditions. This study therefore uncovers principles of effective experimental evolutionary regimens and might prove useful also for biotechnological developments of new strains and for understanding natural strategies in evolutionary arms races between species. Evolthon constitutes a model for community-based scientific exploration that encourages creativity and cooperation.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Evolução Biológica Tipo de estudo: Prognostic_studies Limite: Humans Idioma: En Revista: PLoS Biol Assunto da revista: BIOLOGIA Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Israel

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Evolução Biológica Tipo de estudo: Prognostic_studies Limite: Humans Idioma: En Revista: PLoS Biol Assunto da revista: BIOLOGIA Ano de publicação: 2019 Tipo de documento: Article País de afiliação: Israel