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New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.
Luo, Yunhai; Hitz, Benjamin C; Gabdank, Idan; Hilton, Jason A; Kagda, Meenakshi S; Lam, Bonita; Myers, Zachary; Sud, Paul; Jou, Jennifer; Lin, Khine; Baymuradov, Ulugbek K; Graham, Keenan; Litton, Casey; Miyasato, Stuart R; Strattan, J Seth; Jolanki, Otto; Lee, Jin-Wook; Tanaka, Forrest Y; Adenekan, Philip; O'Neill, Emma; Cherry, J Michael.
Afiliação
  • Luo Y; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Hitz BC; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Gabdank I; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Hilton JA; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Kagda MS; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Lam B; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Myers Z; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Sud P; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Jou J; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Lin K; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Baymuradov UK; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Graham K; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Litton C; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Miyasato SR; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Strattan JS; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Jolanki O; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Lee JW; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Tanaka FY; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Adenekan P; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • O'Neill E; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
  • Cherry JM; Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA.
Nucleic Acids Res ; 48(D1): D882-D889, 2020 01 08.
Article em En | MEDLINE | ID: mdl-31713622
ABSTRACT
The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative research project aimed at identifying all the functional elements in the human and mouse genomes. Data generated by the ENCODE consortium are freely accessible at the ENCODE portal (https//www.encodeproject.org/), which is developed and maintained by the ENCODE Data Coordinating Center (DCC). Since the initial portal release in 2013, the ENCODE DCC has updated the portal to make ENCODE data more findable, accessible, interoperable and reusable. Here, we report on recent updates, including new ENCODE data and assays, ENCODE uniform data processing pipelines, new visualization tools, a dataset cart feature, unrestricted public access to ENCODE data on the cloud (Amazon Web Services open data registry, https//registry.opendata.aws/encode-project/) and more comprehensive tutorials and documentation.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / DNA / Genoma Humano / Bases de Dados Genéticas Limite: Animals / Humans Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Estados Unidos
Texto completo
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XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / DNA / Genoma Humano / Bases de Dados Genéticas Limite: Animals / Humans Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Estados Unidos