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Genome-wide meta-analysis identifies novel loci associated with age-related macular degeneration.
Han, Xikun; Gharahkhani, Puya; Mitchell, Paul; Liew, Gerald; Hewitt, Alex W; MacGregor, Stuart.
Afiliação
  • Han X; Statistical Genetics, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia. Xikun.Han@qimrberghofer.edu.au.
  • Gharahkhani P; School of Medicine, University of Queensland, Brisbane, QLD, Australia. Xikun.Han@qimrberghofer.edu.au.
  • Mitchell P; Statistical Genetics, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.
  • Liew G; Department of Ophthalmology, Centre for Vision Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, NSW, Australia.
  • Hewitt AW; Department of Ophthalmology, Centre for Vision Research, The Westmead Institute for Medical Research, The University of Sydney, Sydney, NSW, Australia.
  • MacGregor S; Menzies Institute for Medical Research, University of Tasmania, Hobart, TAS, Australia.
J Hum Genet ; 65(8): 657-665, 2020 Aug.
Article em En | MEDLINE | ID: mdl-32277175
Age-related macular degeneration (AMD) is the leading cause of irreversible blindness among the elderly population. To accelerate the understanding of the genetics of AMD, we conducted a meta-analysis of genome-wide association studies (GWAS) combining data from the International AMD Genomics Consortium AMD-2016 GWAS (16,144 advanced AMD cases and 17,832 controls), AMD-2013 GWAS (17,181 cases and 60,074 controls), and new data on 4017 AMD cases and 14,984 controls from Genetic Epidemiology Research on Aging study. We identified 12 novel AMD loci near or within C4BPA-CD55, ZNF385B, ZBTB38, NFKB1, LINC00461, ADAM19, CPN1, ACSL5, CSK, RLBP1, CLUL1, and LBP. We then replicated the associations of the novel loci in independent cohorts, UK Biobank (5860 cases and 126,726 controls) and FinnGen (1266 cases and 47,560 control). In general, the concordance in effect sizes was very high (correlation in effect size estimates 0.89), 11 of 12 novel loci were in the expected direction, 5 were associated with AMD at a nominal significance level, and rs3825991 (near gene RLBP1) after Bonferroni correction. We identified an additional 21 novel genes using a gene-based test. Most of the novel genes are expressed in retinal tissue and could be involved in the pathogenesis of AMD (i.e., complement, inflammation, and lipid pathways). These findings enhance our understanding of the genetic architecture of AMD and shed light on the biological process underlying AMD pathogenesis.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Degeneração Macular Tipo de estudo: Prognostic_studies / Risk_factors_studies / Systematic_reviews Limite: Humans Idioma: En Revista: J Hum Genet Assunto da revista: GENETICA MEDICA Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Austrália

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Degeneração Macular Tipo de estudo: Prognostic_studies / Risk_factors_studies / Systematic_reviews Limite: Humans Idioma: En Revista: J Hum Genet Assunto da revista: GENETICA MEDICA Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Austrália