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Phosphomatics: interactive interrogation of substrate-kinase networks in global phosphoproteomics datasets.
Leeming, Michael G; O'Callaghan, Sean; Licata, Luana; Iannuccelli, Marta; Lo Surdo, Prisca; Micarelli, Elisa; Ang, Ching-Seng; Nie, Shuai; Varshney, Swati; Ameen, Sadia; Cheng, Heung-Chin; Williamson, Nicholas A.
Afiliação
  • Leeming MG; Melbourne Mass Spectrometry and Proteomics Facility, Bio21 Molecular Science & Biotechnology Institute, The University of Melbourne, Melbourne, VIC 3010, Australia.
  • O'Callaghan S; Nuritas Limited, Dublin D02 RY95, Ireland.
  • Licata L; Department of Biology, University of Rome Tor Vergata, Rome 00133, Italy.
  • Iannuccelli M; Department of Biochemistry and Molecular Biology, The University of Melbourne, Melbourne, VIC 3010, Australia.
  • Lo Surdo P; Department of Biology, University of Rome Tor Vergata, Rome 00133, Italy.
  • Micarelli E; Department of Biology, University of Rome Tor Vergata, Rome 00133, Italy.
  • Ang CS; Melbourne Mass Spectrometry and Proteomics Facility, Bio21 Molecular Science & Biotechnology Institute, The University of Melbourne, Melbourne, VIC 3010, Australia.
  • Nie S; Melbourne Mass Spectrometry and Proteomics Facility, Bio21 Molecular Science & Biotechnology Institute, The University of Melbourne, Melbourne, VIC 3010, Australia.
  • Varshney S; Melbourne Mass Spectrometry and Proteomics Facility, Bio21 Molecular Science & Biotechnology Institute, The University of Melbourne, Melbourne, VIC 3010, Australia.
  • Ameen S; Department of Biochemistry and Molecular Biology, The University of Melbourne, Melbourne, VIC 3010, Australia.
  • Cheng HC; Department of Biochemistry and Molecular Biology, The University of Melbourne, Melbourne, VIC 3010, Australia.
  • Williamson NA; Melbourne Mass Spectrometry and Proteomics Facility, Bio21 Molecular Science & Biotechnology Institute, The University of Melbourne, Melbourne, VIC 3010, Australia.
Bioinformatics ; 37(11): 1635-1636, 2021 07 12.
Article em En | MEDLINE | ID: mdl-33119075
ABSTRACT
MOTIVATION Mass spectrometry-based phosphoproteomics can routinely identify and quantify thousands of phosphorylated peptides from a single experiment. However interrogating possible upstream kinases and identifying key literature for phosphorylation sites is laborious and time-consuming.

RESULTS:

Here, we present Phosphomatics-a publicly available web resource for interrogating phosphoproteomics data. Phosphomatics allows researchers to upload phosphoproteomics data and interrogate possible relationships from a substrate-, kinase- or pathway-centric viewpoint. AVAILABILITY AND IMPLEMENTATION Phosphomatics is freely available via the internet at https//phosphomatics.com. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Fosfotransferases / Proteômica Idioma: En Revista: Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Austrália
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Fosfotransferases / Proteômica Idioma: En Revista: Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Austrália