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Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative's Workshop and Follow-On Activities.
Vangay, Pajau; Burgin, Josephine; Johnston, Anjanette; Beck, Kristen L; Berrios, Daniel C; Blumberg, Kai; Canon, Shane; Chain, Patrick; Chandonia, John-Marc; Christianson, Danielle; Costes, Sylvain V; Damerow, Joan; Duncan, William D; Dundore-Arias, Jose Pablo; Fagnan, Kjiersten; Galazka, Jonathan M; Gibbons, Sean M; Hays, David; Hervey, Judson; Hu, Bin; Hurwitz, Bonnie L; Jaiswal, Pankaj; Joachimiak, Marcin P; Kinkel, Linda; Ladau, Joshua; Martin, Stanton L; McCue, Lee Ann; Miller, Kayd; Mouncey, Nigel; Mungall, Chris; Pafilis, Evangelos; Reddy, T B K; Richardson, Lorna; Roux, Simon; Schriml, Lynn M.; Shaffer, Justin P; Sundaramurthi, Jagadish Chandrabose; Thompson, Luke R; Timme, Ruth E; Zheng, Jie; Wood-Charlson, Elisha M; Eloe-Fadrosh, Emiley A.
Afiliação
  • Vangay P; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Burgin J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
  • Johnston A; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
  • Beck KL; IBM Almaden Research Center, San Jose, California, USA.
  • Berrios DC; NASA Ames Research Center, Moffett Field, California, USA.
  • Blumberg K; Biosystems Engineering Department, University of Arizona, Tucson, Arizona, USA.
  • Canon S; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Chain P; Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
  • Chandonia JM; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Christianson D; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Costes SV; NASA Ames Research Center, Moffett Field, California, USA.
  • Damerow J; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Duncan WD; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Dundore-Arias JP; California State University, Monterey Bay, California, USA.
  • Fagnan K; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Galazka JM; NASA Ames Research Center, Moffett Field, California, USA.
  • Gibbons SM; Institute for Systems Biology, Seattle, Washington, USA.
  • Hays D; Department of Bioengineering, University of Washington, Seattle, Washington, USA.
  • Hervey J; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Hu B; Center for Bio/Molecular Science & Engineering, Naval Research Laboratory, Washington, DC, USA.
  • Hurwitz BL; Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
  • Jaiswal P; Biosystems Engineering Department, University of Arizona, Tucson, Arizona, USA.
  • Joachimiak MP; Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA.
  • Kinkel L; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Ladau J; Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota, USA.
  • Martin SL; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • McCue LA; Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
  • Miller K; Pacific Northwest National Laboratory, Richland, Washington, USA.
  • Mouncey N; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Mungall C; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Pafilis E; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Reddy TBK; Institute of Marine Biology Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Crete, Greece.
  • Richardson L; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Roux S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
  • Schriml LM; Department of Energy Joint Genome Institute, Berkeley, California, USA.
  • Shaffer JP; University of Maryland School of Medicine, Institute for Genome Sciences, Baltimore, Maryland, USA
  • Sundaramurthi JC; Department of Pediatrics, School of Medicine, University of California, San Diego, California, USA.
  • Thompson LR; Lawrence Berkeley National Laboratory, Berkeley, California, USA.
  • Timme RE; Northern Gulf Institute, Mississippi State University, Mississippi State, Mississippi, USA.
  • Zheng J; Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, Miami, Florida, USA.
  • Wood-Charlson EM; US Food and Drug Administration, Center for Food Safety and Applied Nutrition, College Park, Maryland, USA.
  • Eloe-Fadrosh EA; Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
mSystems ; 6(1)2021 02 23.
Article em En | MEDLINE | ID: mdl-33622857
Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critical. Important contributions have been made in the development of community-driven metadata standards; however, these standards have not been uniformly embraced by the microbiome research community. To understand how these standards are being adopted, or the barriers to adoption, across research domains, institutions, and funding agencies, the National Microbiome Data Collaborative (NMDC) hosted a workshop in October 2019. This report provides a summary of discussions that took place throughout the workshop, as well as outcomes of the working groups initiated at the workshop.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: MSystems Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Estados Unidos
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: MSystems Ano de publicação: 2021 Tipo de documento: Article País de afiliação: Estados Unidos