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COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data.
He, Song; Song, Xinyu; Yang, Xiaoxi; Yu, Jijun; Wen, Yuqi; Wu, Lianlian; Yan, Bowei; Feng, Jiannan; Bo, Xiaochen.
Afiliação
  • He S; Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, P.R.China.
  • Song X; Key Laboratory of Biomedical Engineering and Translational Medicine, Ministry of Industry and Information Technology, Chinese PLA General Hospital, Beijing, P.R.China.
  • Yang X; Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, P.R.China.
  • Yu J; Experimental Center, Beijing Friendship Hospital, Capital Medical University, Beijing, P.R.China.
  • Wen Y; State key Laboratory of Toxicology and Medical Countermeasures, Beijing Institute of Pharmacology and Toxicology, Beijing, P.R.China.
  • Wu L; Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, P.R.China.
  • Yan B; Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, P.R.China.
  • Feng J; Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, P.R.China.
  • Bo X; State key Laboratory of Toxicology and Medical Countermeasures, Beijing Institute of Pharmacology and Toxicology, Beijing, P.R.China.
PLoS Comput Biol ; 17(3): e1008769, 2021 03.
Article em En | MEDLINE | ID: mdl-33735194
Extensive amounts of multi-omics data and multiple cancer subtyping methods have been developed rapidly, and generate discrepant clustering results, which poses challenges for cancer molecular subtype research. Thus, the development of methods for the identification of cancer consensus molecular subtypes is essential. The lack of intuitive and easy-to-use analytical tools has posed a barrier. Here, we report on the development of the COnsensus Molecular SUbtype of Cancer (COMSUC) web server. With COMSUC, users can explore consensus molecular subtypes of more than 30 cancers based on eight clustering methods, five types of omics data from public reference datasets or users' private data, and three consensus clustering methods. The web server provides interactive and modifiable visualization, and publishable output of analysis results. Researchers can also exchange consensus subtype results with collaborators via project IDs. COMSUC is now publicly and freely available with no login requirement at http://comsuc.bioinforai.tech/ (IP address: http://59.110.25.27/). For a video summary of this web server, see S1 Video and S1 File.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Biologia Computacional / Internet / Neoplasias Tipo de estudo: Diagnostic_studies / Guideline Limite: Humans Idioma: En Revista: PLoS Comput Biol Assunto da revista: BIOLOGIA / INFORMATICA MEDICA Ano de publicação: 2021 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Biologia Computacional / Internet / Neoplasias Tipo de estudo: Diagnostic_studies / Guideline Limite: Humans Idioma: En Revista: PLoS Comput Biol Assunto da revista: BIOLOGIA / INFORMATICA MEDICA Ano de publicação: 2021 Tipo de documento: Article