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Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains.
Bartas, Martin; Goswami, Pratik; Lexa, Matej; Cerven, Jirí; Volná, Adriana; Fojta, Miroslav; Brázda, Václav; Pecinka, Petr.
Afiliação
  • Bartas M; Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
  • Goswami P; Department of Biophysical Chemistry and Molecular Oncology, Institute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
  • Lexa M; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic.
  • Cerven J; Faculty of Informatics, Masaryk University, Brno, Czech Republic.
  • Volná A; Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
  • Fojta M; Department of Physics, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
  • Brázda V; Department of Biophysical Chemistry and Molecular Oncology, Institute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
  • Pecinka P; Department of Biophysical Chemistry and Molecular Oncology, Institute of Biophysics of the Czech Academy of Sciences, Brno, Czech Republic.
Brief Bioinform ; 22(5)2021 09 02.
Article em En | MEDLINE | ID: mdl-33837760
ABSTRACT
In a recently published paper, we have found that SARS-CoV-2 hot-spot mutations are significantly associated with inverted repeat loci and CG dinucleotides. However, fast-spreading strains with new mutations (so-called mink farm mutations, England mutations and Japan mutations) have been recently described. We used the new datasets to check the positioning of mutation sites in genomes of the new SARS-CoV-2 strains. Using an open-access Palindrome analyzer tool, we found mutations in these new strains to be significantly enriched in inverted repeat loci.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: SARS-CoV-2 / Mutação Limite: Humans Idioma: En Revista: Brief Bioinform Assunto da revista: BIOLOGIA / INFORMATICA MEDICA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: República Tcheca

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: SARS-CoV-2 / Mutação Limite: Humans Idioma: En Revista: Brief Bioinform Assunto da revista: BIOLOGIA / INFORMATICA MEDICA Ano de publicação: 2021 Tipo de documento: Article País de afiliação: República Tcheca