ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2.
Bioinformatics
; 38(15): 3844-3846, 2022 08 02.
Article
em En
| MEDLINE
| ID: mdl-35751589
ABSTRACT
MOTIVATION The advent of long-read sequencing technologies has increased demand for the visualization and interpretation of transcripts. However, tools that perform such visualizations remain inflexible and lack the ability to easily identify differences between transcript structures. Here, we introduce ggtranscript, an R package that provides a fast and flexible method to visualize and compare transcripts. As a ggplot2 extension, ggtranscript inherits the functionality and familiarity of ggplot2 making it easy to use. AVAILABILITY AND IMPLEMENTATION ggtranscript is an R package available at https//github.com/dzhang32/ggtranscript (DOI https//doi.org/10.5281/zenodo.6374061) via an open-source MIT licence. Further documentation is available at https//dzhang32.github.io/ggtranscript/.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Software
Idioma:
En
Revista:
Bioinformatics
Assunto da revista:
INFORMATICA MEDICA
Ano de publicação:
2022
Tipo de documento:
Article
País de afiliação:
Reino Unido