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Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples.
Zhang, Yifan; Blomquist, Thomas M; Kusko, Rebecca; Stetson, Daniel; Zhang, Zhihong; Yin, Lihui; Sebra, Robert; Gong, Binsheng; Lococo, Jennifer S; Mittal, Vinay K; Novoradovskaya, Natalia; Yeo, Ji-Youn; Dominiak, Nicole; Hipp, Jennifer; Raymond, Amelia; Qiu, Fujun; Arib, Hanane; Smith, Melissa L; Brock, Jay E; Farkas, Daniel H; Craig, Daniel J; Crawford, Erin L; Li, Dan; Morrison, Tom; Tom, Nikola; Xiao, Wenzhong; Yang, Mary; Mason, Christopher E; Richmond, Todd A; Jones, Wendell; Johann, Donald J; Shi, Leming; Tong, Weida; Willey, James C; Xu, Joshua.
Afiliação
  • Zhang Y; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, 72079, USA.
  • Blomquist TM; (Formerly) Department of Pathology, College of Medicine and Life Sciences, The University of Toledo, Toledo, OH, 43614, USA.
  • Kusko R; Lucas County Coroner's Office, 2595 Arlington Ave, Toledo, OH, 43614, USA.
  • Stetson D; Immuneering Corporation, 245 Main St, Cambridge, MA, 02142, USA.
  • Zhang Z; Astrazeneca Pharmaceuticals, 35 Gatehouse Dr, Waltham, MA, 02451, USA.
  • Yin L; Research and Development, Burning Rock Biotech, Shanghai, 201114, China.
  • Sebra R; (Formerly) Pathology and Laboratory Medicine Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA.
  • Gong B; Icahn Institute and Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai, 1425 Madison Ave, New York, NY, 10029, USA.
  • Lococo JS; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, 72079, USA.
  • Mittal VK; Illumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
  • Novoradovskaya N; Thermo Fisher Scientific, 110 Miller Ave, Ann Arbor, MI, 48104, USA.
  • Yeo JY; Agilent Technologies, 11011 N Torrey Pines Rd, La Jolla, CA, 92037, USA.
  • Dominiak N; Department of Pathology, University of Toledo, 3000 Arlington Ave, Toledo, OH, 43614, USA.
  • Hipp J; Department of Pathology, University of Toledo, 3000 Arlington Ave, Toledo, OH, 43614, USA.
  • Raymond A; Department of Pathology, Strata Oncology, Inc., Ann Arbor, MI, 48103, USA.
  • Qiu F; Astrazeneca Pharmaceuticals, 35 Gatehouse Dr, Waltham, MA, 02451, USA.
  • Arib H; Research and Development, Burning Rock Biotech, Shanghai, 201114, China.
  • Smith ML; Icahn Institute and Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai, 1425 Madison Ave, New York, NY, 10029, USA.
  • Brock JE; Icahn Institute and Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai, 1425 Madison Ave, New York, NY, 10029, USA.
  • Farkas DH; Pathology and Laboratory Medicine Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA.
  • Craig DJ; Pathology and Laboratory Medicine Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH, 44195, USA.
  • Crawford EL; Department of Medicine, College of Medicine and Life Sciences, The University of Toledo, Toledo, OH, 43614, USA.
  • Li D; Department of Medicine, College of Medicine and Life Sciences, The University of Toledo, Toledo, OH, 43614, USA.
  • Morrison T; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, 72079, USA.
  • Tom N; Accugenomics, Inc., 1410 Commonwealth Drive, Suite 105, Wilmington, NC, 20403, USA.
  • Xiao W; Center of Molecular Medicine, Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic.
  • Yang M; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081 HZ, Amsterdam, The Netherlands.
  • Mason CE; Massachusetts General Hospital, Harvard Medical School, Boston, MA, 02114, USA.
  • Richmond TA; Stanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, USA.
  • Jones W; Department of Information Science, University of Arkansas at Little Rock, 2801 S. Univ. Ave, Little Rock, AR, 72204, USA.
  • Johann DJ; Department of Physiology and Biophysics, Weill Cornell Medicine, Cornell University, New York, NY, 10065, USA.
  • Shi L; Market & Application Development Bioinformatics, Roche Sequencing Solutions Inc., 4300 Hacienda Dr, Pleasanton, CA, 94588, USA.
  • Tong W; Q2 Solutions - EA Genomics, 5927 S Miami Blvd, Morrisville, NC, 27560, USA.
  • Willey JC; Winthrop P Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, 4301 W Markham St, Little Rock, AR, 72205, USA.
  • Xu J; State Key Laboratory of Genetic Engineering, School of Life Sciences and Shanghai Cancer Hospital/Cancer Institute, Fudan University, Shanghai, 200438, China.
Genome Biol ; 23(1): 141, 2022 06 29.
Article em En | MEDLINE | ID: mdl-35768876
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Sequenciamento de Nucleotídeos em Larga Escala / Formaldeído Limite: Humans Idioma: En Revista: Genome Biol Assunto da revista: BIOLOGIA MOLECULAR / GENETICA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Sequenciamento de Nucleotídeos em Larga Escala / Formaldeído Limite: Humans Idioma: En Revista: Genome Biol Assunto da revista: BIOLOGIA MOLECULAR / GENETICA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos