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Federated learning enables big data for rare cancer boundary detection.
Pati, Sarthak; Baid, Ujjwal; Edwards, Brandon; Sheller, Micah; Wang, Shih-Han; Reina, G Anthony; Foley, Patrick; Gruzdev, Alexey; Karkada, Deepthi; Davatzikos, Christos; Sako, Chiharu; Ghodasara, Satyam; Bilello, Michel; Mohan, Suyash; Vollmuth, Philipp; Brugnara, Gianluca; Preetha, Chandrakanth J; Sahm, Felix; Maier-Hein, Klaus; Zenk, Maximilian; Bendszus, Martin; Wick, Wolfgang; Calabrese, Evan; Rudie, Jeffrey; Villanueva-Meyer, Javier; Cha, Soonmee; Ingalhalikar, Madhura; Jadhav, Manali; Pandey, Umang; Saini, Jitender; Garrett, John; Larson, Matthew; Jeraj, Robert; Currie, Stuart; Frood, Russell; Fatania, Kavi; Huang, Raymond Y; Chang, Ken; Balaña, Carmen; Capellades, Jaume; Puig, Josep; Trenkler, Johannes; Pichler, Josef; Necker, Georg; Haunschmidt, Andreas; Meckel, Stephan; Shukla, Gaurav; Liem, Spencer; Alexander, Gregory S; Lombardo, Joseph.
Afiliação
  • Pati S; Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
  • Baid U; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Edwards B; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Sheller M; Department of Informatics, Technical University of Munich, Munich, Bavaria, Germany.
  • Wang SH; Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
  • Reina GA; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Foley P; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Gruzdev A; Intel Corporation, Santa Clara, CA, USA.
  • Karkada D; Intel Corporation, Santa Clara, CA, USA.
  • Davatzikos C; Intel Corporation, Santa Clara, CA, USA.
  • Sako C; Intel Corporation, Santa Clara, CA, USA.
  • Ghodasara S; Intel Corporation, Santa Clara, CA, USA.
  • Bilello M; Intel Corporation, Santa Clara, CA, USA.
  • Mohan S; Intel Corporation, Santa Clara, CA, USA.
  • Vollmuth P; Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
  • Brugnara G; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Preetha CJ; Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
  • Sahm F; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Maier-Hein K; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Zenk M; Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
  • Bendszus M; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Wick W; Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.
  • Calabrese E; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
  • Rudie J; Department of Neuroradiology, Heidelberg University Hospital, Heidelberg, Germany.
  • Villanueva-Meyer J; Department of Neuroradiology, Heidelberg University Hospital, Heidelberg, Germany.
  • Cha S; Department of Neuroradiology, Heidelberg University Hospital, Heidelberg, Germany.
  • Ingalhalikar M; Clinical Cooperation Unit Neuropathology, German Cancer Consortium (DKTK) within the German Cancer Research Center (DKFZ), Heidelberg, Germany.
  • Jadhav M; Department of Neuropathology, Heidelberg University Hospital, Heidelberg, Germany.
  • Pandey U; Division of Medical Image Computing, German Cancer Research Center, Heidelberg, Germany.
  • Saini J; Pattern Analysis and Learning Group, Department of Radiation Oncology, Heidelberg University Hospital, Heidelberg, Germany.
  • Garrett J; Division of Medical Image Computing, German Cancer Research Center, Heidelberg, Germany.
  • Larson M; Department of Neuroradiology, Heidelberg University Hospital, Heidelberg, Germany.
  • Jeraj R; Clinical Cooperation Unit Neuropathology, German Cancer Consortium (DKTK) within the German Cancer Research Center (DKFZ), Heidelberg, Germany.
  • Currie S; Neurology Clinic, Heidelberg University Hospital, Heidelberg, Germany.
  • Frood R; Department of Radiology & Biomedical Imaging, University of California San Francisco, San Francisco, CA, USA.
  • Fatania K; Department of Radiology & Biomedical Imaging, University of California San Francisco, San Francisco, CA, USA.
  • Huang RY; Department of Radiology & Biomedical Imaging, University of California San Francisco, San Francisco, CA, USA.
  • Chang K; Department of Radiology & Biomedical Imaging, University of California San Francisco, San Francisco, CA, USA.
  • Balaña C; Symbiosis Center for Medical Image Analysis, Symbiosis International University, Pune, Maharashtra, India.
  • Capellades J; Symbiosis Center for Medical Image Analysis, Symbiosis International University, Pune, Maharashtra, India.
  • Puig J; Symbiosis Center for Medical Image Analysis, Symbiosis International University, Pune, Maharashtra, India.
  • Trenkler J; Department of Neuroimaging and Interventional Radiology, National Institute of Mental Health and Neurosciences, Bangalore, Karnataka, India.
  • Pichler J; Department of Radiology, School of Medicine and Public Health, University of Wisconsin, Madison, WI, USA.
  • Necker G; Department of Medical Physics, School of Medicine and Public Health, University of Wisconsin, Madison, WI, USA.
  • Haunschmidt A; Department of Radiology, School of Medicine and Public Health, University of Wisconsin, Madison, WI, USA.
  • Meckel S; Department of Radiology, School of Medicine and Public Health, University of Wisconsin, Madison, WI, USA.
  • Shukla G; Department of Medical Physics, School of Medicine and Public Health, University of Wisconsin, Madison, WI, USA.
  • Liem S; Leeds Teaching Hospitals Trust, Department of Radiology, Leeds, UK.
  • Alexander GS; Leeds Teaching Hospitals Trust, Department of Radiology, Leeds, UK.
  • Lombardo J; Leeds Teaching Hospitals Trust, Department of Radiology, Leeds, UK.
Nat Commun ; 13(1): 7346, 2022 12 05.
Article em En | MEDLINE | ID: mdl-36470898
ABSTRACT
Although machine learning (ML) has shown promise across disciplines, out-of-sample generalizability is concerning. This is currently addressed by sharing multi-site data, but such centralization is challenging/infeasible to scale due to various limitations. Federated ML (FL) provides an alternative paradigm for accurate and generalizable ML, by only sharing numerical model updates. Here we present the largest FL study to-date, involving data from 71 sites across 6 continents, to generate an automatic tumor boundary detector for the rare disease of glioblastoma, reporting the largest such dataset in the literature (n = 6, 314). We demonstrate a 33% delineation improvement for the surgically targetable tumor, and 23% for the complete tumor extent, over a publicly trained model. We anticipate our study to 1) enable more healthcare studies informed by large diverse data, ensuring meaningful results for rare diseases and underrepresented populations, 2) facilitate further analyses for glioblastoma by releasing our consensus model, and 3) demonstrate the FL effectiveness at such scale and task-complexity as a paradigm shift for multi-site collaborations, alleviating the need for data-sharing.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Glioblastoma / Big Data Tipo de estudo: Diagnostic_studies Limite: Humans Idioma: En Revista: Nat Commun Assunto da revista: BIOLOGIA / CIENCIA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Glioblastoma / Big Data Tipo de estudo: Diagnostic_studies Limite: Humans Idioma: En Revista: Nat Commun Assunto da revista: BIOLOGIA / CIENCIA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos