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HiCube: interactive visualization of multiscale and multimodal Hi-C and 3D genome data.
Ye, Tiantian; Hu, Yangyang; Pun, Sydney; Ma, Wenxiu.
Afiliação
  • Ye T; Department of Statistics, University of California Riverside, Riverside, CA 92521, United States.
  • Hu Y; Department of Computer Science and Engineering, University of California Riverside, Riverside, CA 92521, United States.
  • Pun S; Department of Computer Science and Engineering, University of California Riverside, Riverside, CA 92521, United States.
  • Ma W; Department of Statistics, University of California Riverside, Riverside, CA 92521, United States.
Bioinformatics ; 39(4)2023 04 03.
Article em En | MEDLINE | ID: mdl-36961339
ABSTRACT

SUMMARY:

HiCube is a lightweight web application for interactive visualization and exploration of diverse types of genomics data at multiscale resolutions. Especially, HiCube displays synchronized views of Hi-C contact maps and 3D genome structures with user-friendly annotation and configuration tools, thereby facilitating the study of 3D genome organization and function. AVAILABILITY AND IMPLEMENTATION HiCube is implemented in Javascript and can be installed via NPM. The source code is freely available at GitHub (https//github.com/wmalab/HiCube).
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genoma / Genômica Idioma: En Revista: Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Estados Unidos
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Genoma / Genômica Idioma: En Revista: Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Estados Unidos