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Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes.
Wu, Qiong; Schuemie, Martijn J; Suchard, Marc A; Ryan, Patrick; Hripcsak, George M; Rohde, Charles A; Chen, Yong.
Afiliação
  • Wu Q; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America.
  • Schuemie MJ; Observational Health Data Sciences and Informatics, New York, NY, United States of America; Janssen Research & Development, Titusville, NJ, United States of America; Department of Biostatistics, University of California, Los Angeles, CA, United States of America.
  • Suchard MA; Observational Health Data Sciences and Informatics, New York, NY, United States of America; Department of Biostatistics, University of California, Los Angeles, CA, United States of America; Department of Human Genetics, University of California, Los Angeles, CA, United States of America.
  • Ryan P; Observational Health Data Sciences and Informatics, New York, NY, United States of America; Janssen Research & Development, Titusville, NJ, United States of America; Department of Biomedical Informatics, Columbia University Irving Medical Center, New York, NY, United States of America.
  • Hripcsak GM; Department of Biomedical Informatics, Columbia University Irving Medical Center, New York, NY, United States of America; Medical Informatics Services, New York-Presbyterian Hospital, New York, NY, United States of America.
  • Rohde CA; Department of Biostatistics, Johns Hopkins University, Baltimore, MD, United States of America.
  • Chen Y; Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America; Observational Health Data Sciences and Informatics, New York, NY, United States of America. Electronic address: ychen123@pennmedicine.upenn.
J Biomed Inform ; 145: 104476, 2023 09.
Article em En | MEDLINE | ID: mdl-37598737
OBJECTIVE: We developed and evaluated a novel one-shot distributed algorithm for evidence synthesis in distributed research networks with rare outcomes. MATERIALS AND METHODS: Fed-Padé, motivated by a classic mathematical tool, Padé approximants, reconstructs the multi-site data likelihood via Padé approximant whose key parameters can be computed distributively. Thanks to the simplicity of [2,2] Padé approximant, Fed-Padé requests an extremely simple task and low communication cost for data partners. Specifically, each data partner only needs to compute and share the log-likelihood and its first 4 gradients evaluated at an initial estimator. We evaluated the performance of our algorithm with extensive simulation studies and four observational healthcare databases. RESULTS: Our simulation studies revealed that a [2,2]-Padé approximant can well reconstruct the multi-site likelihood so that Fed-Padé produces nearly identical estimates to the pooled analysis. Across all simulation scenarios considered, the median of relative bias and rate of instability of our Fed-Padé are both <0.1%, whereas meta-analysis estimates have bias up to 50% and instability up to 75%. Furthermore, the confidence intervals derived from the Fed-Padé algorithm showed better coverage of the truth than confidence intervals based on the meta-analysis. In real data analysis, the Fed-Padé has a relative bias of <1% for all three comparisons for risks of acute liver injury and decreased libido, whereas the meta-analysis estimates have a substantially higher bias (around 10%). CONCLUSION: The Fed-Padé algorithm is nearly lossless, stable, communication-efficient, and easy to implement for models with rare outcomes. It provides an extremely suitable and convenient approach for synthesizing evidence in distributed research networks with rare outcomes.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Algoritmos / Aprendizado de Máquina Tipo de estudo: Policy_brief / Prognostic_studies / Systematic_reviews Idioma: En Revista: J Biomed Inform Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Estados Unidos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Algoritmos / Aprendizado de Máquina Tipo de estudo: Policy_brief / Prognostic_studies / Systematic_reviews Idioma: En Revista: J Biomed Inform Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Estados Unidos