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Outline and background for the EU-OS solubility prediction challenge.
Wang, Wenyu; Tang, Jing; Zaliani, Andrea.
Afiliação
  • Wang W; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki 00290, Finland; Institute for Molecular Medicine Finland-FIMM, Helsinki Institute of Life Science-HiLIFE, University of Helsinki, Helsinki 00290, Finland; iCAN Digital Precision Cancer Medicine Flagship, University of Helsinki, Helsinki 00290, Finland.
  • Tang J; Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki 00290, Finland; iCAN Digital Precision Cancer Medicine Flagship, University of Helsinki, Helsinki 00290, Finland. Electronic address: jing.tang@helsinki.fi.
  • Zaliani A; Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Schnackenburgallee 114, Hamburg 22525, Germany; Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD), Theodor Stern Kai 7, Frankfurt 60590, Germany. Electronic address: andrea.zaliani@itmp.fraunhofer.de.
SLAS Discov ; 29(4): 100155, 2024 Jun.
Article em En | MEDLINE | ID: mdl-38518955
ABSTRACT
In June 2022, EU-OS came to the decision to make public a solubility data set of 100+K compounds obtained from several of the EU-OS proprietary screening compound collections. Leveraging on the interest of SLAS for screening scientific development it was decided to launch a joint EUOS-SLAS competition within the chemoinformatics and machine learning (ML) communities. The competition was open to real world computation experts, for the best, most predictive, classification model of compound solubility. The aim of the competition was multiple from a practical side, the winning model should then serve as a cornerstone for future solubility predictions having used the largest training set so far publicly available. From a higher project perspective, the intent was to focus the energies and experiences, even if professionally not precisely coming from Pharma R&D; to address the issue of how to predict compound solubility. Here we report how the competition was ideated and the practical aspects of conducting it within the Kaggle framework, leveraging of the versatility and the open-source nature of this data science platform. Consideration on results and challenges encountered have been also examined.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Solubilidade / Aprendizado de Máquina Limite: Humans Idioma: En Revista: SLAS Discov Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Finlândia

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Solubilidade / Aprendizado de Máquina Limite: Humans Idioma: En Revista: SLAS Discov Ano de publicação: 2024 Tipo de documento: Article País de afiliação: Finlândia