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1.
Methods ; 226: 49-53, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38621436

RESUMEN

Epigenetic proteins (EP) play a role in the progression of a wide range of diseases, including autoimmune disorders, neurological disorders, and cancer. Recognizing their different functions has prompted researchers to investigate them as potential therapeutic targets and pharmacological targets. This paper proposes a novel deep learning-based model that accurately predicts EP. This study introduces a novel deep learning-based model that accurately predicts EP. Our approach entails generating two distinct datasets for training and evaluating the model. We then use three distinct strategies to transform protein sequences to numerical representations: Dipeptide Deviation from Expected Mean (DDE), Dipeptide Composition (DPC), and Group Amino Acid (GAAC). Following that, we train and compare the performance of four advanced deep learning models algorithms: Ensemble Residual Convolutional Neural Network (ERCNN), Generative Adversarial Network (GAN), Convolutional Neural Network (CNN), and Gated Recurrent Unit (GRU). The DDE encoding combined with the ERCNN model demonstrates the best performance on both datasets. This study demonstrates deep learning's potential for precisely predicting EP, which can considerably accelerate research and streamline drug discovery efforts. This analytical method has the potential to find new therapeutic targets and advance our understanding of EP activities in disease.


Asunto(s)
Aprendizaje Profundo , Descubrimiento de Drogas , Redes Neurales de la Computación , Descubrimiento de Drogas/métodos , Humanos , Epigénesis Genética/efectos de los fármacos , Algoritmos , Proteínas/química
2.
Curr Med Imaging ; 19(7): 734-748, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-36239727

RESUMEN

BACKGROUND: The techniques differed in many of the literature on the detection of Acute Lymphocytic Leukemia from the blood smear pictures, as the cases of infection in the world and the Kingdom of Saudi Arabia were increasing and the causes of this disease were not known, especially for children, which is a serious and fatal disease. OBJECTIVE: Through this work we seek to contribute to discover the blood cells affected by Acute Lymphocytic Leukem and to find an effective and fast method and to have the correct diagnosis as the time factor is important in the diagnosis and the initiation of treatment. which is based on one of the deep learning techniques that specialize in very deep networks, the use of one of the CNNs is VGG16. METHODS: Detection scheme is implemented by pre-processing, feature extraction, model building, fine tuning method, classification are executed. By using VGG16 pre-trained, and using SVM and MLP classification algorithms in Machine Learning. RESULTS: Our results are evaluated based on criteria, such as Accuracy, Precision, Recall, and F1-Score. The accuracy results for SVM classifier MLP of 77% accuracy at 0.001 learning rate and the accuracy for SVM classifier 75% at 0.005 learning rate. Whereas, the best accuracy result for VGG16 model was 92.27% at 0.003 learning rate. The best validation accuracy result was 85.62% at 0.001 learning rate.


Asunto(s)
Redes Neurales de la Computación , Leucemia-Linfoma Linfoblástico de Células Precursoras , Niño , Humanos , Algoritmos , Aprendizaje Automático
3.
PeerJ Comput Sci ; 9: e1468, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-37547388

RESUMEN

Information security has become an inseparable aspect of the field of information technology as a result of advancements in the industry. Authentication is crucial when it comes to dealing with security. A user must be identified using biometrics based on certain physiological and behavioral markers. To validate or establish the identification of an individual requesting their services, a variety of systems require trustworthy personal recognition schemes. The goal of such systems is to ensure that the offered services are only accessible by authorized users and not by others. This case study provides enhanced accuracy for multimodal biometric authentication based on voice and face hence, reducing the equal error rate. The proposed scheme utilizes the Gaussian mixture model for voice recognition, FaceNet model for face recognition and score level fusion to determine the identity of the user. The results reveal that the proposed scheme has the lowest equal error rate in comparison to the previous work.

4.
Bioengineering (Basel) ; 10(12)2023 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-38136020

RESUMEN

The early identification and treatment of various dermatological conditions depend on the detection of skin lesions. Due to advancements in computer-aided diagnosis and machine learning approaches, learning-based skin lesion analysis methods have attracted much interest recently. Employing the concept of transfer learning, this research proposes a deep convolutional neural network (CNN)-based multistage and multiclass framework to categorize seven types of skin lesions. In the first stage, a CNN model was developed to classify skin lesion images into two classes, namely benign and malignant. In the second stage, the model was then used with the transfer learning concept to further categorize benign lesions into five subcategories (melanocytic nevus, actinic keratosis, benign keratosis, dermatofibroma, and vascular) and malignant lesions into two subcategories (melanoma and basal cell carcinoma). The frozen weights of the CNN developed-trained with correlated images benefited the transfer learning using the same type of images for the subclassification of benign and malignant classes. The proposed multistage and multiclass technique improved the classification accuracy of the online ISIC2018 skin lesion dataset by up to 93.4% for benign and malignant class identification. Furthermore, a high accuracy of 96.2% was achieved for subclassification of both classes. Sensitivity, specificity, precision, and F1-score metrics further validated the effectiveness of the proposed multistage and multiclass framework. Compared to existing CNN models described in the literature, the proposed approach took less time to train and had a higher classification rate.

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