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1.

Design patterns of biological cells.

Andrews, Steven S; Wiley, H Steven; Sauro, Herbert M.

Bioessays ; 46(3): e2300188, 2024 03.

Artículo en Inglés | MEDLINE | ID: mdl-38247191

2.

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Shaikh, Bilal; Smith, Lucian P; Vasilescu, Dan; Marupilla, Gnaneswara; Wilson, Michael; Agmon, Eran; Agnew, Henry; Andrews, Steven S; Anwar, Azraf; Beber, Moritz E; Bergmann, Frank T; Brooks, David; Brusch, Lutz; Calzone, Laurence; Choi, Kiri; Cooper, Joshua; Detloff, John; Drawert, Brian; Dumontier, Michel; Ermentrout, G Bard; Faeder, James R; Freiburger, Andrew P; Fröhlich, Fabian; Funahashi, Akira; Garny, Alan; Gennari, John H; Gleeson, Padraig; Goelzer, Anne; Haiman, Zachary; Hasenauer, Jan; Hellerstein, Joseph L; Hermjakob, Henning; Hoops, Stefan; Ison, Jon C; Jahn, Diego; Jakubowski, Henry V; Jordan, Ryann; Kalas, Matús; König, Matthias; Liebermeister, Wolfram; Sheriff, Rahuman S Malik; Mandal, Synchon; McDougal, Robert; Medley, J Kyle; Mendes, Pedro; Müller, Robert; Myers, Chris J; Naldi, Aurelien; Nguyen, Tung V N; Nickerson, David P.

Nucleic Acids Res ; 50(W1): W108-W114, 2022 07 05.

Artículo en Inglés | MEDLINE | ID: mdl-35524558

3.

Python interfaces for the Smoldyn simulator.

Singh, Dilawar; Andrews, Steven S.

Bioinformatics ; 38(1): 291-293, 2021 12 22.

Artículo en Inglés | MEDLINE | ID: mdl-34293100

4.

Effects of surfaces and macromolecular crowding on bimolecular reaction rates.

Andrews, Steven S.

Phys Biol ; 17(4): 045001, 2020 05 15.

Artículo en Inglés | MEDLINE | ID: mdl-32163932

5.

Using Blockchain Technology to Mitigate Challenges in Service Access for the Homeless and Data Exchange Between Providers: Qualitative Study.

Khurshid, Anjum; Rajeswaren, Vivian; Andrews, Steven.

J Med Internet Res ; 22(6): e16887, 2020 06 04.

Artículo en Inglés | MEDLINE | ID: mdl-32348278

6.

Crosstalk between the lipopolysaccharide and phospholipid pathways during outer membrane biogenesis in Escherichia coli.

Emiola, Akintunde; Andrews, Steven S; Heller, Carolin; George, John.

Proc Natl Acad Sci U S A ; 113(11): 3108-13, 2016 Mar 15.

Artículo en Inglés | MEDLINE | ID: mdl-26929331

7.

Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface.

Andrews, Steven S.

Bioinformatics ; 33(5): 710-717, 2017 03 01.

Artículo en Inglés | MEDLINE | ID: mdl-28365760

8.

Multiscale reaction-diffusion simulations with Smoldyn.

Robinson, Martin; Andrews, Steven S; Erban, Radek.

Bioinformatics ; 31(14): 2406-8, 2015 Jul 15.

Artículo en Inglés | MEDLINE | ID: mdl-25788627

9.

Development of an Experimental Animal Model for Lower Back Pain by Percutaneous Injury-Induced Lumbar Facet Joint Osteoarthritis.

Kim, Jae-Sung; Ahmadinia, Kasra; Li, Xin; Hamilton, John L; Andrews, Steven; Haralampus, Chris A; Xiao, Guozhi; Sohn, Hong-Moon; You, Jae-Won; Seo, Yo-Seob; Stein, Gary S; Van Wijnen, Andre J; Kim, Su-Gwan; Im, Hee-Jeong.

J Cell Physiol ; 230(11): 2837-47, 2015 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-25858171

10.

Terahertz waveguiding between parallel dielectric films.

Pan, Yi; Andrews, Steven R.

Opt Express ; 23(1): 274-83, 2015 Jan 12.

Artículo en Inglés | MEDLINE | ID: mdl-25835674

11.

Methods for modeling cytoskeletal and DNA filaments.

Andrews, Steven S.

Phys Biol ; 11(1): 011001, 2014 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-24476634

12.

Launching a virtual decision lab: development and field-testing of a web-based patient decision support research platform.

Hoffman, Aubri S; Llewellyn-Thomas, Hilary A; Tosteson, Anna N A; O'Connor, Annette M; Volk, Robert J; Tomek, Ivan M; Andrews, Steven B; Bartels, Stephen J.

BMC Med Inform Decis Mak ; 14: 112, 2014 Dec 12.

Artículo en Inglés | MEDLINE | ID: mdl-25495552

13.

Signal integration and integral feedback control with biochemical reaction networks.

Andrews, Steven S; Kochen, Michael; Smith, Lucian; Feng, Song; Wiley, H Steven; Sauro, Herbert M.

bioRxiv ; 2024 Apr 29.

Artículo en Inglés | MEDLINE | ID: mdl-38746178

14.

Design Patterns of Biological Cells.

Andrews, Steven S; Wiley, H Steven; Sauro, Herbert M.

ArXiv ; 2023 Oct 11.

Artículo en Inglés | MEDLINE | ID: mdl-37873010

15.

Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer.

Hua, Xu; Li, Yongsheng; Pentaparthi, Sairahul R; McGrail, Daniel J; Zou, Raymond; Guo, Li; Shrawat, Aditya; Cirillo, Kara M; Li, Qing; Bhat, Akshay; Xu, Min; Qi, Dan; Singh, Ashok; McGrath, Francis; Andrews, Steven; Aung, Kyaw Lwin; Das, Jishnu; Zhou, Yunyun; Lodi, Alessia; Mills, Gordon B; Eckhardt, S Gail; Mendillo, Marc L; Tiziani, Stefano; Wu, Erxi; Huang, Jason H; Sahni, Nidhi; Yi, S Stephen.

Cancer Res ; 83(1): 59-73, 2023 01 04.

Artículo en Inglés | MEDLINE | ID: mdl-36265133

16.

Dynamics and Sensitivity of Signaling Pathways.

Kochen, Michael A; Andrews, Steven S; Wiley, H Steven; Feng, Song; Sauro, Herbert M.

Curr Pathobiol Rep ; 10(2): 11-22, 2022 Jun.

Artículo en Inglés | MEDLINE | ID: mdl-36969954

17.

Nutri: A Behavioral Science-Based Clinical Decision Support for Chronic Disease Management.

Burgermaster, Marissa; Rosenthal, Madalyn; Tierney, William M; Altillo, Brandon S; Nordquist, Eric; Enriquez, Christina; Andrews, Steven; Klatt, Caroline; Daniels, Grant.

AMIA Annu Symp Proc ; 2022: 299-308, 2022.

Artículo en Inglés | MEDLINE | ID: mdl-37128464

18.

Detailed simulations of cell biology with Smoldyn 2.1.

Andrews, Steven S; Addy, Nathan J; Brent, Roger; Arkin, Adam P.

PLoS Comput Biol ; 6(3): e1000705, 2010 Mar 12.

Artículo en Inglés | MEDLINE | ID: mdl-20300644

19.

Systems biology: a switch for sex.

Andrews, Steven S; Arkin, Adam P.

Curr Biol ; 17(11): R410-2, 2007 Jun 05.

Artículo en Inglés | MEDLINE | ID: mdl-17550765

20.

Developing web-based online support tools: the Dartmouth decision support software.

Andrews, Steven B; Drake, Tyler; Haslett, William; Munusamy, Rajesh.

Psychiatr Rehabil J ; 34(1): 37-41, 2010.

Artículo en Inglés | MEDLINE | ID: mdl-20615843

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Design patterns of biological cells.

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Python interfaces for the Smoldyn simulator.

Effects of surfaces and macromolecular crowding on bimolecular reaction rates.

Using Blockchain Technology to Mitigate Challenges in Service Access for the Homeless and Data Exchange Between Providers: Qualitative Study.

Crosstalk between the lipopolysaccharide and phospholipid pathways during outer membrane biogenesis in Escherichia coli.

Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface.

Multiscale reaction-diffusion simulations with Smoldyn.

Development of an Experimental Animal Model for Lower Back Pain by Percutaneous Injury-Induced Lumbar Facet Joint Osteoarthritis.

Terahertz waveguiding between parallel dielectric films.

Methods for modeling cytoskeletal and DNA filaments.

Launching a virtual decision lab: development and field-testing of a web-based patient decision support research platform.

Signal integration and integral feedback control with biochemical reaction networks.

Design Patterns of Biological Cells.

Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer.

Dynamics and Sensitivity of Signaling Pathways.

Nutri: A Behavioral Science-Based Clinical Decision Support for Chronic Disease Management.

Detailed simulations of cell biology with Smoldyn 2.1.

Systems biology: a switch for sex.

Developing web-based online support tools: the Dartmouth decision support software.