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1.
BMC Infect Dis ; 23(1): 852, 2023 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-38053032

RESUMEN

BACKGROUND: Motor neuron disease (MND) is a fatal neurodegenerative disorder that leads to progressive loss of motor neurons. Chlamydia psittaci (C. psittaci) is a rare etiology of community-acquired pneumonia characterized primarily by respiratory distress. We reported a case of C. psittaci pneumonia complicated with motor neuron disease (MND). CASE PRESENTATION: A 74-year-old male was referred to the Shaoxing Second Hospital at January, 2022 complaining of fever and fatigue for 2 days. The patient was diagnosed of MND with flail arm syndrome 1 year ago. The metagenomic next-generation sequencing (mNGS) of sputum obtained through bedside fiberoptic bronchoscopy showed C. psittaci infection. Then doxycycline was administrated and bedside fiberoptic bronchoscopy was performed to assist with sputum excretion. Computed Tomography (CT) and fiberoptic bronchoscopy revealed a significant decrease in sputum production. On day 24 after admission, the patient was discharged with slight dyspnea, limited exercise tolerance. One month later after discharge, the patient reported normal respiratory function, and chest CT showed significant absorption of sputum. CONCLUSIONS: The mNGS combined with bedside fiberoptic bronchoscopy could timely detect C. psittaci infection. Bedside fiberoptic bronchoscopy along with antibiotic therapy may be effective for C. psittaci treatment.


Asunto(s)
Chlamydophila psittaci , Enfermedad de la Neurona Motora , Neumonía , Psitacosis , Masculino , Humanos , Anciano , Psitacosis/complicaciones , Psitacosis/diagnóstico , Psitacosis/tratamiento farmacológico , Bronquios , Enfermedad de la Neurona Motora/complicaciones , Enfermedad de la Neurona Motora/diagnóstico , Disnea
2.
Environ Res ; 221: 115259, 2023 03 15.
Artículo en Inglés | MEDLINE | ID: mdl-36634894

RESUMEN

The accurate and reliable prediction of chlorophyll-a (Chl-a) concentration is of great significance in reservoir environment management and pollution control. To improve the accuracy of Chl-a index prediction, a novel hybrid water quality prediction method was proposed for gated recurrent unit (GRU) neural network based on particle swarm algorithm optimized variational modal decomposition (PV-GRU). The results showed that the variational mode decomposition (VMD) optimized by particle swarm optimization (PSO) in this study effectively reduced the non-smooth of water quality data. In addition, the GRU neural network reduced the risk of overfitting the deep-learning model with small sample data. Overall, the PV-GRU prediction model exhibited significant superiority in predicting non-smooth and non-linear Chl-a sequences with a relatively small sample size. The prediction errors of PV-GRU model were all less than those of other comparative models, and the fitting determination coefficient R2 was 94.21%. These results indicated that the proposed PV-GRU model can effectively predict the content of Chl-a in reservoirs, which provides an alternative new method for water quality prediction to prevent and control eutrophication in reservoirs.


Asunto(s)
Algoritmos , Clorofila , Clorofila A , Redes Neurales de la Computación , Calidad del Agua
3.
J Fish Dis ; 46(2): 165-176, 2023 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-36423261

RESUMEN

The infectious spleen and kidney necrosis virus (ISKNV) is a highly lethal virus, which has brought significant losses to aquaculture. Therefore, a new vaccine against ISKNV with high efficiency, safety and convenience must be developed. While baculoviruses are more commonly used as protein expression systems for vaccine antigen production, this paper used baculovirus technology to develop a live-vector vaccine, BacMCP, which contains the coding sequence of the major capsid protein (MCP) (GenBank accession no. AF371960) of ISKNV and is driven by a CMV promoter. Real-time PCR and immunofluorescence showed that the MCP gene was successfully delivered to and expressed in fish cells and tissues inoculated with BacMCP. Immune-related gene (IgM, TGF-ß, IL-1, IL-8, TNF-α) expression was induced in BacMCP-treated groups of largemouth bass compared with control groups. Specific antibodies could be detected in the serum of BacMCP injection-vaccinated largemouth bass by ELISA. After injection or immersion vaccination with BacMCP for 21 days, largemouth bass were infected with ISKNV. The immune effect of the injected immunization on fish in different sizes was evaluated. The vaccine efficacy of injection-vaccinated bass was 100% in small bass and 85.7% in large bass. The vaccine efficacy of immersion-vaccinated small bass was 77.3%. This study suggested that BacMCP can be used as a vector-based vaccine candidate to prevent the diseases caused by ISKNV infection.


Asunto(s)
Lubina , Infecciones por Virus ADN , Enfermedades de los Peces , Iridoviridae , Vacunas Virales , Animales , Baculoviridae/genética , Baculoviridae/metabolismo , Vacunas Sintéticas , Proteínas de la Cápside/genética , Infecciones por Virus ADN/prevención & control , Infecciones por Virus ADN/veterinaria
4.
Environ Res ; 205: 112457, 2022 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-34875262

RESUMEN

In the context of "Peak CO2 emissions & Carbon neutrality", H2 energy, as the green and clean energy, will make an important contribution to the carbon emission reduction and carbon neutralization. Bio-H2 production from organic wastewater achieved not only pollutants removal, but also the H2 energy recovery and carbon emission reduction. In this study, a maltose-preferring producer of Clostridium butyricum NH-02 was investigated for the potential and performance of bio-H2 production from brewery wastewater in batch and semi-continuous fermentation. Appropriate initial pH 7.0 and organic loading of 21,173 mg/L chemical oxygen demand (COD) (2670 mg/L reducing sugar (RS)) stimulated the batch H2 fermentation efficiency with a maximum H2 yield of 1.89 mol-H2/mol-RS and cumulative H2 production of 479.3 mL/L. Comparing to the batch fermentation, semi-continuous fermentation showed significant improvement in H2 productivity and yield. The maximum cumulative H2 yield of 5.21 mol-H2/mol-RS and production of 254.78 mL were obtained with the optimal hydraulic retention time (HRT) at 47 h after a 120 h fermentation. This study demonstrated the potential of H2 production from brewery wastewater with C. butyricum, and a great improvement in H2 production in semi-continuous fermentation.


Asunto(s)
Reactores Biológicos , Aguas Residuales , Butiratos , Fermentación , Hidrógeno/análisis , Maltosa
5.
Environ Res ; 206: 112630, 2022 04 15.
Artículo en Inglés | MEDLINE | ID: mdl-34973940

RESUMEN

With the acceleration of urbanization, the proportion of surface imperviousness is increasing continuously in cities, resulting in frequent waterlogging disasters. In this context, storm water management, based on the low-impact development (LID) concept, offers an effective measure for the management of urban storm waters. First, the storm water management model (SWMM) was built for a typical cold climate city (Changchun) in China. Next, the two-stage calibrated model was employed to explore the surface runoff and storm sewer control effects of four LID combination plans. Finally, these plans were put through a "cost-benefit" evaluation through an analytic hierarchy process. According to the results, after using four LID plans, the reduction rates of peak runoff exceeded 40% and the problem of overflow load of the storm sewage was significantly mitigated. The infiltration-oriented Plan I proved to be the optimal plan, with the lowest proportions of the overflow nodes and full-load pipe sections in each return period, as well as with maximum overall performance. This study offers technical and conformed methodological support to cold cities for the prevention and control of waterlogging disasters and recycling of rainwater resources.


Asunto(s)
Lluvia , Movimientos del Agua , China , Ciudades , Clima Frío , Urbanización
6.
Environ Res ; 192: 110282, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33038361

RESUMEN

Sulfate dependent ammonium oxidation (Sulfammox) is a potential microbial process coupling ammonium oxidation with sulfate reduction under anaerobic conditions, which provides a novel link between nitrogen and sulfur cycle. Recently, Sulfammox was detected in wastewater treatments and was confirmed to occur in natural environments, especially in marine sediments. However, knowledge gaps in the mechanism of Sulfammox, functional bacteria, and their metabolic pathway, make it challenging to estimate its environmental significance and potential applications. This review provides an overview of recent advances in Sulfammox, including possible mechanisms, functional bacteria, and main influential factors, and discusses future challenges and opportunities. Future perspectives are outlined and discussed, such as exploration of microbial community structure and metabolic pathways, possible interactions with other microbes, environmental significance, and potential applications for nitrogen and sulfate removal, to inspire more researches on the Sulfammox process.


Asunto(s)
Compuestos de Amonio , Anaerobiosis , Reactores Biológicos , Nitrógeno , Oxidación-Reducción , Sulfatos , Azufre
7.
Appl Microbiol Biotechnol ; 105(14-15): 6019-6031, 2021 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-34324010

RESUMEN

Claudin-2 is a major component of tight junctions (TJs), which play an important role in reovirus entry into host cells. The Bombyx mori cytoplasmic polyhedosis virus (BmCPV) relates to the cypovirus strain of the reovirus family. So far, the role of claudin-2 in the process of BmCPV infection is not known. In the present study, it was observed that increasing expression of the claudin-2 gene (CLDN2) may concomitantly elevate BmCPV infection. Contrarily, knockdown of CLDN2 expression by siRNAs can reduce BmCPV infection. Similarly, antibody-based blockage of claudin-2 could also decrease BmCPV cell entry. These results suggest that claudin-2 can promote BmCPV infection in vitro. Moreover, immunofluorescence (IF) assays showed that claudin-2 can interact with BmCPV during viral infection. Specifically, co-immunoprecipitation experiments indicated that claudin-2 binds the BmCPV VP7 (instead of VP3 proteins). The interaction between VP7 and claudin-2 was further confirmed by bimolecular fluorescence complementation (BIFC). Altogether, our results suggest that BmCPV cell entry can be promoted upon interaction of VP7 with claudin-2. These findings provide new mechanistic insights related to BmCPV infection. KEY POINTS: •Claudin-2 could promote BmCPV infection of cells. •Claudin-2 interacted with BmCPV during BmCPV infection. •Claudin-2 could interact with BmCPV VP7 protein, but not with VP3 proteins.


Asunto(s)
Bombyx , Reoviridae , Animales , Claudina-2 , Claudinas/genética , Interacciones Huésped-Patógeno , Proteínas de Insectos , Internalización del Virus , Proteína de la Zonula Occludens-2
8.
Fish Physiol Biochem ; 47(4): 857-867, 2021 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-33745109

RESUMEN

Exosomes are small membrane-enclosed vesicles secreted by various types of cells. Exosomes not only participate in different physiological processes in cells, but also involve in the cellular responses to viral infection. Grass carp reovirus (GCRV) is a non-enveloped virus with segmented, double-stranded RNA genome. Nowadays, the exact role of exosomes in regulating the life cycle of GCRV infection is still unclear. In this study, the exosomes secreted from Ctenopharyngodon idellus kidney (CIK) cells infected or uninfected with GCRV were isolated, and the differential protein expression profiles were analyzed by proteomic technologies. A total of 1297 proteins were identified in the isolated exosomes. The differentially abundant proteins were further analyzed with functional categories, and numerous important pathways were regulated by exosomes in GCRV-infected CIK cells. These exosomal proteins were estimated to interact with the genes (proteins) of the top 10 most enriched signaling pathways. Furthermore, GW4869 exosome inhibitor suppressed the expression level of VP7 in GCRV-infected cells, suggesting that exosomes play a crucial role in the life cycle of GCRV infection. These findings could shed new lights on understanding the functional roles of exosomes in the cellular responses to GCRV infection.


Asunto(s)
Exosomas/metabolismo , Enfermedades de los Peces/metabolismo , Proteínas de Peces/metabolismo , Riñón/citología , Infecciones por Reoviridae/metabolismo , Compuestos de Anilina/farmacología , Animales , Compuestos de Bencilideno/farmacología , Carpas , Células Cultivadas , Exosomas/efectos de los fármacos , Exosomas/virología , Enfermedades de los Peces/virología , Riñón/virología , Proteómica , Reoviridae , Infecciones por Reoviridae/veterinaria , Infecciones por Reoviridae/virología
9.
Virol J ; 17(1): 121, 2020 08 05.
Artículo en Inglés | MEDLINE | ID: mdl-32758272

RESUMEN

BACKGROUND: The protective efficacy of avian influenza virus (AIV) vaccines is unsatisfactory due to the presence of various serotypes generated by genetic reassortment. Thus, immunization with a polyantigen chimeric epitope vaccine may be an effective strategy for protecting poultry from infection with different AIV subtypes. METHODS: Baculovirus has recently emerged as a novel and attractive gene delivery vehicle for animal cells. In the present study, a recombinant baculovirus BmNPV-CMV/THB-P10/CTLT containing a fused codon-optimized sequence (CTLT) of T lymphocyte epitopes from H1HA, H9HA, and H7HA AIV subtypes, and another fused codon-optimized sequence (THB) of Th and B cell epitopes from H1HA, H9HA, and H7HA AIV subtypes, driven by a baculovirus P10 promoter and cytomegalovirus CMV promoter, respectively, was constructed. RESULTS: Western blotting and cellular immunofluorescence demonstrated that the CTLT (THB) can be expressed in rBac-CMV/THB-P10/CTLT-infected silkworm cells (mammalian HEK293T cells). Furthermore, the recombinant virus, rBac-CMV-THB-CTLT, was used to immunize both chickens and mice. CONCLUSIONS: The results of an indirect ELISA, immunohistochemistry, and T lymphocyte proliferation assay indicated that specific humoral and cellular responses were detected in both chicken and mice. These results suggest that rBac-CMV/THB-P10/CTLT can be developed as a potential vaccine against different AIV subtypes.


Asunto(s)
Anticuerpos Antivirales/sangre , Epítopos/inmunología , Subtipo H5N1 del Virus de la Influenza A/inmunología , Vacunas contra la Influenza/inmunología , Infecciones por Orthomyxoviridae/inmunología , Animales , Anticuerpos Antivirales/inmunología , Baculoviridae/genética , Bombyx , Pollos , Modelos Animales de Enfermedad , Epítopos/genética , Células HEK293 , Humanos , Subtipo H5N1 del Virus de la Influenza A/genética , Vacunas contra la Influenza/genética , Masculino , Ratones , Ratones Endogámicos BALB C , Enfermedades de las Aves de Corral/inmunología , Enfermedades de las Aves de Corral/prevención & control , Regiones Promotoras Genéticas , Linfocitos T/química , Linfocitos T/inmunología , Vacunas Sintéticas/administración & dosificación , Vacunas Sintéticas/inmunología
10.
Environ Res ; 186: 109580, 2020 07.
Artículo en Inglés | MEDLINE | ID: mdl-32668543

RESUMEN

A novel integrated process was established in this study to produce butanol from rice straw. In the first pretreatment, an alternative NaOH/Urea preatment operated at -12 oC efficiently removed 10.9 g lignin and preserved 91.54% cellulose and hemicellulose in 100 g rice straw. Subsequently, crude cellulase produced from Trichoderma viride was used to convert pretreated rice straw to mono-sugars for fermentation. The yields of glucose, xylose and arabiose obtained from 100 g rice straw were 31 g, 13.4 g and 0.48 g, respectively, resulting in a 69.45% saccharification efficiency of crude enzyme. Finally, to alleviate the carbon catabolite repression (CCR) and enhance butanol production, the coculture system of Clostridium beijerinckii and Saccharomyces cerevisiae was applied. Compared to monoculture of C. beijerinckii F-6, more sugars were consumed, especially the reduction rate of xylose reached to 81.87%, 32.99% higher than that in monoculture system. With more substrate facilitied into metabolism, the butanol concentration reached to 10.62 g/L corresponding to 0.28 g/g substrate, 115.38% higher than that in monoculture system. Overall, this integrated process was a low-energy consumption and efficient method for butanol production from rice straw.


Asunto(s)
Celulosa , Oryza , Fermentación , Hidrólisis , Polisacáridos
11.
Aquaculture ; 520: 734969, 2020 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-32287459

RESUMEN

The grass carp accounts for a large proportion of aquacultural production in China, but the hemorrhagic disease caused by grass carp reovirus (GCRV) infection often causes huge economic losses to the industry. Interleukin 17 (IL-17) is an important cytokine that plays a critical role in the inflammatory and immune responses. Although IL-17 family members have been extensively studied in mammals, our knowledge of the activity of IL-17 proteins in teleosts in response to viral infection is still limited. In this study, the role of IL-17 in GCRV infection and its mechanism were investigated. The expression levels of IL-17AF1, IL-17AF2, and IL-17AF3 in Ctenopharyngodon idella kidney (CIK) cells gradually increased from 6 h after infection with GCRV. The nuclear translocation of p65, which acts in the NF-κB signaling pathway, was also increased by GCRV infection. The overexpression of IL-17AF1, IL-17AF2, or IL-17AF3 also promoted the nuclear translocation of p65 and the levels of phospho-IκBα in CIK cells, and reduced the expression of the viral structural protein VP7. An NF-κB signal inhibitor abolished the inhibition of GCRV infection by IL-17 proteins. These results suggested that the NF-κB signaling pathway was activated by the overexpression of IL-17 proteins, resulting in the inhibition of viral infection. In conclusion, in this study, we demonstrated that IL-17AF1, IL-17AF2, and IL-17AF3 acted as immune cytokines, exerting an antiviral effect by activating the NF-κB signaling pathway.

12.
BMC Genomics ; 20(1): 342, 2019 May 06.
Artículo en Inglés | MEDLINE | ID: mdl-31060506

RESUMEN

BACKGROUND: In our previous study, we identified four isoforms of the Bmovo gene, Bmovo-1, Bmovo-2, Bmovo-3 and Bmovo-4 from the silkworm ovary and verified that ovarian development was regulated by the BmOVO proteins. RESULTS: To understand the regulatory mechanisms of ovarian development, the regulation of four BmOVO isoforms on the B. mori ovarian tumor (Bmotu) promoter activity was investigated with luciferase reporter assays. The results showed the Bmotu promoter activity was positively regulated by BmOVO-1, BmOVO-2, BmOVO-3 and BmOVO-4 in a dose-dependent manner, of which BmOVO-2 had the highest transcriptional activation. However, the first (A1) and third acidic domains (A3) at the N-terminus of BmOVO-1 are transcriptional repression domains, while the fourth (A4) and fifth acidic domains (A5) are transcriptional activation domains. A recombinant BmOVO zinc-finger domain was found to bind to the GTACCGTTGTA sequence located at the Bmotu promoter. Furthermore, the Bmotu promoter activity was negatively regulated by 'Tal-like' peptide, which can trigger BmOVO-1 degradation at the N-terminus. CONCLUSIONS: These results will help us to further understand the regulatory mechanisms of BmOVO isoforms on Bmotu promoter activity and ovarian development in the silkworm.


Asunto(s)
Bombyx/genética , Regulación del Desarrollo de la Expresión Génica , Proteínas de Insectos/genética , Ovario/metabolismo , Regiones Promotoras Genéticas , Animales , Bombyx/crecimiento & desarrollo , Bombyx/metabolismo , Femenino , Proteínas de Insectos/metabolismo , Ovario/crecimiento & desarrollo , Isoformas de Proteínas , Activación Transcripcional
13.
Fish Shellfish Immunol ; 92: 101-110, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31163296

RESUMEN

Cyprinid herpesvirus II (CyHV-2) is highly contagious and pathogenic to Carassius auratus gibelio (gibel carp), causing enormous economic losses in aquaculture in Yancheng city, Jiangsu province, China; however, to date, there is no effective way to protect C. auratus gibelio from CyHV-2 infection. In this study, a recombinant baculovirus vector vaccine, BacCarassius-D4ORFs, containing a fused codon-optimized sequence D4ORFs comprising the ORF72 (region 1-186 nt), ORF66 (region 993-1197 nt), ORF81 (region 603-783 nt) and ORF82 (region 85-186 nt) genes of CyHV-2, driven by a Megalobrama amblycephala ß-actin promoter, was constructed. Then, qPCR, Western blotting and immunofluorescence assays showed that the fused gene D4ORFs was successfully delivered and expressed in fish cells or tissues by transduction with BacCarassius-D4ORFs. The fused gene D4ORFs could not be detected by PCR in the C. auratus gibelio injected with BacCarassius-D4ORFs after 7 weeks. Specific antibody against ORF72 could be detected in the serum of vaccinated C. auratus gibelio by injection with BacCarassius-D4ORFs. Furthermore, when C. auratus gibelio were vaccinated with BacCarassius-D4ORFs via the oral or injection route, followed by challenge with CyHV-2, the relative survival rate of immunized C. auratus gibelio reached 59.3% and 80.01%, respectively. These results suggested that BacCarassius-D4ORFs has the potential to be used as a vector-based vaccine for the prevention and treatment of disease caused by CyHV-2 infection.


Asunto(s)
Enfermedades de los Peces/prevención & control , Carpa Dorada/inmunología , Herpesviridae/inmunología , Vacunas contra Herpesvirus/inmunología , Animales , Genes Virales , Infecciones por Herpesviridae/prevención & control , Infecciones por Herpesviridae/veterinaria , Sistemas de Lectura Abierta , Vacunas Atenuadas/inmunología
14.
Fish Shellfish Immunol ; 94: 50-57, 2019 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-31470136

RESUMEN

Circular RNAs (circRNAs) with regulatory potency activity was identified from varieties of species. Crucian carp (Carassius auratus gibelio) is one of the most freshwater aquaculture species in China. Every year, huge economic damage to the farming was caused by the virus and bacterial infection. Until now, there is any information about circRNA reported from the Crucian carp. In this study, the expression pattern of circRNA in Crucian carp was investigated with transcriptomic analysis. The results showed that only 37 circRNAs were identified from the Crucian carp, and these circRNAs biogenesis was formed with canonical GU-AG splicing mechanism with unevenly distributed on the chromosomes. Wherein, most of the circRNAs were derived from the sense overlapping strategy. Reverse transcript PCR and Sanger sequencing data indicated that these circRNAs were existed authenticity in Crucian carp. The bioinformatics analysis indicated that circRNAs identified from the Crucian carp with potential miRNA sponge regulate the expression level of mRNAs. GO annotation and KEGG pathway analysis of these circRNAs showed that more than 20% circRNAs were related with catalytic activity and binding in the category of molecular function, and these circRNAs were enriched in 9 signaling pathways, such as, Wnt signaling pathway, MAPK signaling pathway, Ubiquitin mediated proteolysis et al. 220 mRNAs would be regulated by the circRNAs via miRNAs mediation. These target mRNAs were further analyzed with functional annotation and KEGG analysis. GO annotation analysis showed that several genes were related with function of nucleotide binding, transcription regulatory activity. KEGG pathway analysis showed that 5 genes were enriched in the pathway of Endocytosis. The circRNA-miRNA-mRNA regulation network indicated that one miRNA can link one or more circRNA and one or more mRNA. Overall, these results will not only help us to further understand the novel RNA transcripts in Crucian carp, but also provide the novel clue to investigate the interaction between host and pathogens from this novel circRNA molecule.


Asunto(s)
Carpas/genética , ARN Circular/genética , Transducción de Señal/inmunología , Animales , Secuencia de Bases , Carpas/inmunología , Biología Computacional , Perfilación de la Expresión Génica/veterinaria , ARN Circular/inmunología , ARN Circular/metabolismo , Transducción de Señal/genética
16.
J Invertebr Pathol ; 163: 48-63, 2019 05.
Artículo en Inglés | MEDLINE | ID: mdl-30872141

RESUMEN

Bacterial diseases can occur as a result of disruption of the intestinal microbial population in the silkworm, Bombyx mori, and are often induced by bidensovirus (BmBDV) infection. We investigated the effects of BmBDV infection on intestinal microbes and immune gene responses in fifth instar silkworm larvae. Midgut contents were collected from BmBDV-infected and uninfected silkworms at 48, 96, and 144 h post-infection (hpi) and the intestinal flora were analyzed using 16S rRNA gene Illumina MiSeq sequencing technology. The abundance of intestinal bacteria differed between BmBDV-infected and uninfected silkworms. There were no significant differences in bacterial diversity at 48 and 96 hpi, but bacterial diversity in infected larvae was lower at 144 hpi compared with that of uninfected larvae. At the phylum level, the ratio of Proteobacteria was higher in infected larvae than in uninfected larvae at 48 and 96 hpi, but was lower after 144 hpi, while the ratio of Firmicutes had increased relative to uninfected silkworms. At the genus level, the ratio of Enterococcus increased gradually in infected silkworms, however, proportion of bacteria genera Incertae sedis were increased at 96 hpi, and the proportion of Lactococcus had decreased at 96 hpi. Principal component analysis showed that the proportion of Enterococcus species present was negatively correlated with most dominant genera. Increases in the abundances of the genera Anderseniella, Simplicispira, Enterococcus and, genera Incertae sedis, were associated with BmBDV infection. Quantitative reverse transcription-polymerase chain reaction indicated that expression levels of genes associated with immune deficiency (IMD), Toll, and JAK/STAT pathways were higher at 144 hpi with BmBDV infection. Enterococcus abundance was higher and was positively correlated with the expression level of spatzle-1, peptidoglycan recognition protein LE, and peptidoglycan recognition protein LB genes, suggesting that an increase in the abundance of Enterococcus leads to activation of the Toll and IMD immune pathways.


Asunto(s)
Bombyx , Virus de Insectos/inmunología , Larva/inmunología , Larva/microbiología , Larva/virología , Animales , Bombyx/inmunología , Bombyx/microbiología , Bombyx/virología , Microbioma Gastrointestinal/genética , Microbioma Gastrointestinal/inmunología , Genes Bacterianos , Interacciones Microbiota-Huesped , Inmunidad/genética , Proteínas de Insectos/inmunología , Proteínas de Insectos/metabolismo , Virus de Insectos/aislamiento & purificación , ARN Ribosómico 16S , Transducción de Señal/genética , Transcriptoma
17.
RNA Biol ; 15(2): 292-301, 2018 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-29268657

RESUMEN

The pathogenesis of Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) infection is unclear, although accumulating evidence indicates that circular RNAs (circRNAs), which act as competing endogenous RNAs or positive regulators, play important roles in regulating gene expression in eukaryotes and, thus, may play a role in BmCPV infections. To explore the expression and biological functions of circRNAs in the silkworm midgut following BmCPV infection, silkworm circRNA expression profiles of normal midgut tissue (control) and BmCPV-infected midgut tissue (test) were determined using high-through sequencing. A total of 9,753 and 7,475circRNAs were detected from the control and test samples, respectively. The two samples shared 6,085 circRNAs, while 646 and 737 circRNAs were expressed specifically in the control and test samples, respectively. A total of 3,638 circRNAs were shown to be differentially expressed, and 400 circRNAs were substantially differentially expressed with a fold-change ≥ 2.0 (p< 0.05 and a false discover rate < 0.05), of which 294 were up-regulated and 106 were down-regulated following infection. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were conducted to determine the principal functions of the substantially differentially regulated genes. circRNA-miRNA interaction networks were constructed based on a correlation analysis between the differentially expressed circRNAs and the nature of their microRNA (miRNA) binding sites. The network inferred that 13 miRNAs interacting with 193 circRNAs were among the 300 most abundant relationships. bmo-miR-3389-5p, bmo-miR-745-3p, and bmo-miR-3262 were related to 30, 34, and 34 circRNAs, respectively. circRNA_8115, circRNA_9444, circRNA_4553, circRNA_0827, and circRNA_6649 contained six, five, four, four, and four miRNA binding sites, respectively. We further found that alternative circularization of circRNAs is a common feature in silkworms and that the junction sites of many silkworm circRNAs are flanked by canonical GT/AG splicing signals. Our study is the first to show the circRNA response to virus infection. Thus, it provides a novel perspective on circRNA-miRNA interactions during BmCPV pathogenesis, and it lays the foundation for future research of the potential roles of circRNAs in BmCPV pathogenesis.


Asunto(s)
Bombyx/genética , Perfilación de la Expresión Génica/métodos , MicroARNs/genética , ARN/genética , Reoviridae/patogenicidad , Animales , Sitios de Unión , Bombyx/virología , Tracto Gastrointestinal/virología , Regulación de la Expresión Génica , Redes Reguladoras de Genes , Secuenciación de Nucleótidos de Alto Rendimiento , MicroARNs/metabolismo , ARN/química , ARN/metabolismo , ARN Circular , Infecciones por Reoviridae/genética , Infecciones por Reoviridae/virología , Análisis de Secuencia de ARN
18.
Appl Microbiol Biotechnol ; 102(16): 6841-6845, 2018 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-29909570

RESUMEN

A large number of DNAs in eukaryote genomes can code for atypical transcripts, and their functions are controversial. It has been reported that the transcripts contain many small open reading frames (sORFs), which were originally considered as non-translatable RNAs. However, increasing evidence has suggested that some of these sORFs can encode for small peptides and some are conserved across large evolutionary distances. It has been reported that the small peptides have functions and may be involved in varieties of cellular processes, playing important roles in development, physiology, and metabolism. Among the sORFs, studies of the non-canonical gene polished rice/tarsal-less (pri/tal) in Drosophila and mille-pattes(mlpt) in Tribolium have been more thoroughly studied. The genes similar to pri/tal in other species have been defined as the tarsal-less-related gene family, tal-like gene. In this review, we described recent progress in the discovery and functional characterization of the small peptides encoded by the tal-like gene and their possible functional potentials.


Asunto(s)
Proteínas de Drosophila/genética , Sistemas de Lectura Abierta/genética , Sistemas de Lectura Abierta/fisiología , Péptidos/fisiología , Transaldolasa/genética , Animales
19.
Appl Microbiol Biotechnol ; 102(3): 1367-1379, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-29214406

RESUMEN

Bombyx mori cypovirus (BmCPV) is one of the major viral pathogen for silkworm, and the genome of BmCPV is composed of 10 dsRNA segments. As construction system of recombinant BmCPV (rBmCPV) is scanty, researchers achieved little progress in studying gene function of BmCPV in recent decades. Here, 10 recombinant plasmids with a full-length cDNA of viral genome segments S1-S10 containing T7 promoter were constructed. After cotransfecting the BmN cells with the mixture of 10 in vitro-transcribed RNAs, pathological changes were observed. Real-time PCR and Western blot showed viral gene vp1 and structural proteins were expressed. It is found the genome of the rBmCPV is composed of 10 dsRNA segments similar to those of wild-type BmCPV. Moreover, viral particles and polyhedron with virions can be generated in the cotransfected cells and the injected silkworm midguts. These findings confirmed the formation of infective rBmCPV. Additionally, we found viable rBmCPV was generated by cotransfecting the mixture of in vitro-transcribed S1-S9 RNAs into the cultured cells, confirming polh was not essential for BmCPV replication. Moreover, an infectious rBmCPV expressing the DsRed protein was constructed based on this system. Further investigation showed S2 and S7 segments are indispensible for viral proliferation. Our findings demonstrated the construction system of rBmCPV can be utilized for exploring viral replication and pathogenesis, and investigated method for constructing rBmCPV will certainly facilitate developing novel biopesticides and expressing exogenous gene in the midgut of silkworm.


Asunto(s)
Bombyx/virología , Genes Virales , Plásmidos/genética , Reoviridae/genética , Animales , Proteínas de la Cápside/genética , Línea Celular , Tracto Gastrointestinal/virología , Expresión Génica , Genoma Viral , Interacciones Huésped-Patógeno , ARN Viral/genética , Recombinación Genética , Reoviridae/patogenicidad , Reoviridae/fisiología , Virión/genética , Replicación Viral
20.
Appl Microbiol Biotechnol ; 102(4): 1809-1822, 2018 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-29306967

RESUMEN

The polycistronic and non-canonical gene tarsal-less (tal, known as pri) was reported to be required for embryonic and imaginal development in Drosophila; however, there are few reports of the tal gene in the silkworm Bombyx mori. Here, we cloned a tal-like (Bmtal) gene, and a sequence analysis showed that the Bmtal cDNA (1661 bp) contains five small open reading frames (smORFs) (A1, A2, A3, A4, and B) that encode short peptides of 11-12 (A1-A4) amino acid residues containing an LDPTG(E)L(Q)(V)Y motif that is conserved in Drosophila Tal, as well as a 32-amino-acid B peptide. Reverse transcription-quantitative polymerase chain reaction showed that the expression of the Bmtal gene was highest in the trachea, followed by the silk gland and Malpighian tubule, in day 3 fifth-instar larvae. Subcellular localization showed that BmTal localized in the nucleus. By regulating the expression of the full-length Bmtal gene and the functional smORFs of Bmtal, we showed that the expression levels of the Bmovo gene and genes related to the Notch, transforming growth factor-ß, and Hippo signaling pathways changed with changes in BmTal peptide expression. A co-immunoprecipitation assay showed that BmTal interacts with polyubiquitin, which triggered degradation and/or processing of the 14-3-3 protein zeta. A comparative transcriptome analysis showed that 2843 (2045) genes were up- (down)-regulated after Bmtal gene expression was up-regulated. The up- (down)-regulated differentially expressed genes were enriched in 326 (278) gene ontology terms (P ≤ 0.05) and 54 (59) Kyoto Encyclopedia of Genes and Genomes pathways (P ≤ 0.05), and the results indicated that the BmTal peptides could function as mediators of hormone levels or the activities of multiple pathways, including the peroxisome proliferator-activated receptor, Hedgehog, mitogen-activated protein kinase, adipocytokine, and gonadotropin-releasing hormone signaling pathways, as well as the innate immune response. These results increase our understanding of the function and mechanism of BmTal at the genome-wide level.


Asunto(s)
Bombyx/enzimología , Bombyx/genética , Transaldolasa/genética , Transaldolasa/metabolismo , Estructuras Animales/enzimología , Animales , Núcleo Celular/enzimología , Perfilación de la Expresión Génica , Regulación del Desarrollo de la Expresión Génica , Redes Reguladoras de Genes , Inmunoprecipitación , Mapeo de Interacción de Proteínas , Mapas de Interacción de Proteínas , Reacción en Cadena en Tiempo Real de la Polimerasa , Transducción de Señal
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