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1.
Chembiochem ; : e202400128, 2024 Jun 06.
Artículo en Inglés | MEDLINE | ID: mdl-38842537

RESUMEN

Amid the bourgeoning demand for in-silico designed, environmentally sustainable, and highly effective hair care formulations, a growing interest is evident in the exploration of realistic computational model for the hair surface. In this work, we present an atomistic model for the outermost layer of the hair surface derived through molecular dynamics simulations, which comprises 18-Methyleicosanoic acid (18-MEA) fatty acid chains covalently bound onto the keratin-associated protein 10-4 (KAP10-4) at a spacing distance of ~1 nm. Remarkably, this hair surface model facilitates the inclusion of free fatty acids (free 18-MEA) into the gaps between chemically bound 18-MEA chains, up to a maximum number that results in a packing density of 0.22 nm2 per fatty acid molecule, consistent with the optimal spacing identified through free energy analysis. Atomistic insights are provided for the organization of fatty acid chains, structural features, and interaction energies on protein-inclusive hair surface models with varying amounts of free 18-MEA (FMEA) depletion, as well as varying degrees of anionic cysteic acid from damaged bound 18-MEA (BMEA), under both dry and wet conditions. In the presence of FMEA and water, the fatty acid chains in a pristine hair surface prefers to adopt a thermodynamically favored extended chain conformation, forming a thicker protective layer (~3 nm) on the protein surface. Our simulation results reveal that, while the depletion of FMEA can induce a pronounced impact on the thickness, tilt angle, and order parameters of fatty acid chains, the removal of BMEA has a marked effect on water penetration. There is a "sweet spot" spacing between the 18-MEA whereby damaged hair surface properties can be reinstated by replenishing FMEA. Through the incorporation of the protein layer and free fatty acids, the hair surface models presented in this study enables a realistic representation of the intricate details within the hair epicuticle, facilitating a molecular scale assessment of surface properties during the formulation design process.

2.
Macromol Rapid Commun ; 41(21): e2000240, 2020 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-32914462

RESUMEN

A thorough experimental investigation of polymer-glass transition temperature (Tg ) is performed on poly(vinyl alcohol) (PVA) and fumed silica nanoparticle (SiNP) composite. This is done together with atomistic molecular dynamics simulations of PVA systems in contact with bare and fully hydroxylated silica. Experimentally, PVA-SiNP composites are prepared by simple solution casting from aqueous solutions followed by its characterization using Fourier-transform infrared spectroscopy (FTIR), dynamic mechanical analysis (DMA), and dynamic scanning calorimetry (DSC). Both theoretical and experimentally deduced Tg are correlated with the presence of hydrogen bonding interactions involving OH functionality present on the surface of SiNP and along PVA polymer backbone. Further deconvolution of FTIR data show that inter-molecular hydrogen bonding present between PVA and SiNP surface is directly responsible for the increase in Tg . SiNP filler and PVA matrix ratio is also optimized for a desired Tg increase. An optimal loading of SiNP exists, in order to yield the maximum Tg increase arising from the competition between hydrogen bonding and crowding effect of SiNP.


Asunto(s)
Nanocompuestos , Alcohol Polivinílico , Enlace de Hidrógeno , Simulación de Dinámica Molecular , Polímeros , Dióxido de Silicio , Temperatura de Transición
3.
Br J Cancer ; 119(9): 1106-1117, 2018 10.
Artículo en Inglés | MEDLINE | ID: mdl-30318519

RESUMEN

BACKGROUND: Adhesion-mediated activation of FAK/ERK signalling pathway, enabled by the formation of filopodial protrusions (FLP), has been shown to be an important event for triggering of dormancy-to-proliferation switch and metastatic outgrowth of breast cancer cells (BCC). We studied the role of actin-binding protein profilin1 (Pfn1) in these processes. METHODS: Quantitative immunohistochemistry (IHC) of BC tissue microarray (TMA) and survival analyses of curated transcriptome datasets of BC patients were performed to examine Pfn1's association with certain clinicopathological features. FLP formation and single cell outgrowth of BCC were assessed using a 3D matrigel culture that accurately predicts dormant vs metastatic outgrowth phenotypes of BCC in certain microenvironment. Gene expression studies were performed to identify potential biological pathways that are perturbed under Pfn1-depleted condition. RESULTS: Lower Pfn1 expression is correlated with lower nuclear grade of breast tumours and longer relapse-free survival of BC patients. Pfn1 depletion leads to defects in FLP and outgrowth of BCC but without impairing either FAK or ERK activation. Guided by transcriptome analyses, we further showed that Pfn1 depletion is associated with prominent SMAD3 upregulation. Although knockdown and overexpression experiments revealed that SMAD3 has an inhibitory effect on the outgrowth of breast cancer cells, SMAD3 knockdown alone was not sufficient to enhance the outgrowth potential of Pfn1-depleted BCC suggesting that other proliferation-regulatory pathways in conjunction with SMAD3 upregulation may underlie the outgrowth-deficient phenotype of BCC cells upon depletion of Pfn1. CONCLUSION: Overall, these data suggest that Pfn1 may be a novel biomarker for BC recurrence and a possible target to reduce metastatic outgrowth of BCC.


Asunto(s)
Neoplasias de la Mama/patología , Técnicas de Cultivo de Célula/métodos , Profilinas/deficiencia , Proteína smad3/genética , Regulación hacia Arriba , Neoplasias de la Mama/genética , Neoplasias de la Mama/metabolismo , Línea Celular Tumoral , Proliferación Celular , Femenino , Regulación Neoplásica de la Expresión Génica , Humanos , Clasificación del Tumor , Pronóstico , Transducción de Señal , Análisis de Supervivencia , Análisis de Matrices Tisulares , Microambiente Tumoral
4.
Hepatology ; 62(1): 147-57, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25690322

RESUMEN

UNLABELLED: In the classical form of α1-antitrypsin deficiency (ATD), aberrant intracellular accumulation of misfolded mutant α1-antitrypsin Z (ATZ) in hepatocytes causes hepatic damage by a gain-of-function, "proteotoxic" mechanism. Whereas some ATD patients develop severe liver disease (SLD) that necessitates liver transplantation, others with the same genetic defect completely escape this clinical phenotype. We investigated whether induced pluripotent stem cells (iPSCs) from ATD individuals with or without SLD could model these personalized variations in hepatic disease phenotypes. Patient-specific iPSCs were generated from ATD patients and a control and differentiated into hepatocyte-like cells (iHeps) having many characteristics of hepatocytes. Pulse-chase and endoglycosidase H analysis demonstrate that the iHeps recapitulate the abnormal accumulation and processing of the ATZ molecule, compared to the wild-type AT molecule. Measurements of the fate of intracellular ATZ show a marked delay in the rate of ATZ degradation in iHeps from SLD patients, compared to those from no liver disease patients. Transmission electron microscopy showed dilated rough endoplasmic reticulum in iHeps from all individuals with ATD, not in controls, but globular inclusions that are partially covered with ribosomes were observed only in iHeps from individuals with SLD. CONCLUSION: iHeps model the individual disease phenotypes of ATD patients with more rapid degradation of misfolded ATZ and lack of globular inclusions in cells from patients who have escaped liver disease. The results support the concept that "proteostasis" mechanisms, such as intracellular degradation pathways, play a role in observed variations in clinical phenotype and show that iPSCs can potentially be used to facilitate predictions of disease susceptibility for more precise and timely application of therapeutic strategies.


Asunto(s)
Células Madre Pluripotentes Inducidas/metabolismo , Hepatopatías/etiología , Deficiencia de alfa 1-Antitripsina/complicaciones , Células Cultivadas , Retículo Endoplásmico Rugoso/metabolismo , Humanos , Hepatopatías/metabolismo , alfa 1-Antitripsina/metabolismo
5.
J Biol Chem ; 289(25): 17497-514, 2014 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-24798335

RESUMEN

The AP-2 clathrin adaptor complex oversees endocytic cargo selection in two parallel but independent manners. First, by physically engaging peptide-based endocytic sorting signals, a subset of clathrin-dependent transmembrane cargo is directly collected into assembling buds. Synchronously, by interacting with an assortment of clathrin-associated sorting proteins (CLASPs) that independently select different integral membrane cargo for inclusion within the incipient bud, AP-2 handles additional cargo capture indirectly. The distal platform subdomain of the AP-2 ß2 subunit appendage is a privileged CLASP-binding surface that recognizes a cognate, short α-helical interaction motif. This signal, found in the CLASPs ß-arrestin and the autosomal recessive hypercholesterolemia (ARH) protein, docks into an elongated groove on the ß2 appendage platform. Tyr-888 is a critical constituent of this spatially confined ß2 appendage contact interface and is phosphorylated in numerous high-throughput proteomic studies. We find that a phosphomimetic Y888E substitution does not interfere with incorporation of expressed ß2-YFP subunit into AP-2 or alter AP-2 deposition at surface clathrin-coated structures. The Y888E mutation does not affect interactions involving the sandwich subdomain of the ß2 appendage, indicating that the mutated appendage is folded and operational. However, the Y888E, but not Y888F, switch selectively uncouples interactions with ARH and ß-arrestin. Phyogenetic conservation of Tyr-888 suggests that this residue can reversibly control occupancy of the ß2 platform-binding site and, hence, cargo sorting.


Asunto(s)
Complejo 2 de Proteína Adaptadora/metabolismo , Vesículas Cubiertas por Clatrina/metabolismo , Fibroblastos/metabolismo , Complejo 2 de Proteína Adaptadora/genética , Secuencias de Aminoácidos , Sustitución de Aminoácidos , Animales , Arrestinas/genética , Arrestinas/metabolismo , Línea Celular Transformada , Vesículas Cubiertas por Clatrina/genética , Fibroblastos/citología , Ratones , Ratones Noqueados , Mutación Missense , Fosforilación/fisiología , Fosfotirosina/genética , Fosfotirosina/metabolismo
6.
bioRxiv ; 2024 Apr 19.
Artículo en Inglés | MEDLINE | ID: mdl-38585904

RESUMEN

Climate change is expected to profoundly affect mosquito distributions and their ability to serve as vectors for disease, specifically with the anticipated increase in heat waves. The rising temperature and frequent heat waves can accelerate mosquito life cycles, facilitating higher disease transmission. Conversely, higher temperatures could increase mosquito mortality as a negative consequence. Warmer temperatures are associated with increased human density, suggesting a need for anthropophilic mosquitoes to adapt to be more hardy to heat stress. Mosquito eggs provide an opportunity to study the biological impact of climate warming as this stage is stationary and must tolerate temperatures at the site of female oviposition. As such, egg thermotolerance is critical for survival in a specific habitat. In nature, Aedes mosquitoes exhibit different behavioral phenotypes, where specific populations prefer depositing eggs in tree holes and prefer feeding non-human vertebrates. In contrast, others, particularly human-biting specialists, favor laying eggs in artificial containers near human dwellings. This study examined the thermotolerance of eggs, along with adult stages, for Aedes aegypti and Ae. albopictus lineages associated with known ancestry and shifts in their relationship with humans. Mosquitoes collected from areas with higher human population density, displaying increased human preference, and having a human-associated ancestry profile have increased egg viability following high-temperature stress. Unlike eggs, thermal tolerance among adults showed no significant correlation based on the area of collection or human-associated ancestry. This study highlights that the egg stage is likely critical to mosquito survival when associated with humans and needs to be accounted when predicting future mosquito distribution.

7.
bioRxiv ; 2024 Mar 16.
Artículo en Inglés | MEDLINE | ID: mdl-38559099

RESUMEN

Mosquitoes occupy a wide range of habitats where they experience various environmental conditions. The ability of some species, such as the tiger mosquito, Aedes albopictus, to adapt to local conditions certainly contributes to their invasive success. Among traits that remain to be examined, mosquitoes' ability to time their activity with that of the local host population has been suggested to be of significant epidemiological importance. However, whether different populations display heritable differences in their chronotype has not been examined. Here, we compared laboratory strains originating from 8 populations from 3 continents, monitored their spontaneous locomotor activity patterns, and analyzed their sleep-like states. Overall, all strains showed conserved diurnal activity concentrated in the hours preceding the crepuscule. Similarly, they all showed increased sleep levels during the morning and night hours. However, we observed strain-specific differences in the activity levels at each phase of the day. We also observed differences in the fraction of time that each strain spends in a sleep-like state, explained by variations in the sleep architecture across strains. Human population density and the latitude of the site of geographic origin of the tested strain showed significant effects on sleep and activity patterns. Altogether, these results suggest that Ae. albopictus mosquitoes adapt to local environmental conditions via heritable adaptations of their chronotype.

8.
Adv Sci (Weinh) ; : e2402390, 2024 May 27.
Artículo en Inglés | MEDLINE | ID: mdl-38803059

RESUMEN

Modern human societies are highly dependent on plastic materials, however, the bulk of them are non-renewable commodity plastics that cause pollution problems and consume large amounts of energy for their thermal processing activities. In this article, a sustainable cellulose hydroplastic material and its composites, that can be shaped repeatedly into various 2D/3D geometries using just water are introduced. In the wet state, their high flexibility and ductility make it conducive for the shaping to take place. In the ambient environment, the wet hydroplastic transits spontaneously into rigid materials with its intended shape in a short time of <30 min despite a thickness of hundreds of microns. They also possess humidity resistance and are structurally stable in highly humid environments. Given their excellent mechanical properties, geometry reprogrammability, bio-based, and biodegradable nature, cellulose hydroplastic poses as a sustainable alternative to traditional plastic materials and even "green" thermoplastics. This article also demonstrates the possibility of 3D-printing these hydroplastics and the potential of employing them in electronics applications. The demonstrated hydroshapable structural electronic components show capability in performing electronic functions, load-bearing ability and geometry versatility, which are attractive features for lightweight, customizable and geometry-unique electronic devices.

9.
bioRxiv ; 2024 Jun 22.
Artículo en Inglés | MEDLINE | ID: mdl-38854138

RESUMEN

Survival through periods of drought is critical for mosquitoes to reside in semi-arid regions with humans, but water sources may be limited. Previous studies have shown that dehydrated mosquitoes will increase blood feeding propensity, but how this would occur over extended dry periods is unknown. Following a bloodmeal, prolonged exposure to dry conditions increased secondary blood feeding in mosquitoes by nearly two-fold, and chronic blood feeding allowed mosquitoes to survive twenty days without access to water sources. This refeeding did not alter the number of eggs generated, suggesting this refeeding is for hydration and nutrient replenishment. Exposure to desiccating conditions following a bloodmeal resulted in increased activity, decreased sleep levels, and prompted a return of CO2 sensing before egg deposition. The increased blood feeding during the vitellogenic stage and higher survival during dry periods are predicted to increase pathogen transmission and explain the elevated levels of specific arbovirus cases during dry conditions. These results solidify our understanding of the role of dry periods on mosquito blood feeding and how mosquito dehydration contributes to vectorial capacity and disease transmission dynamics.

10.
ACS Appl Bio Mater ; 7(5): 3414-3430, 2024 05 20.
Artículo en Inglés | MEDLINE | ID: mdl-38687465

RESUMEN

We have semi-synthesized a natural product 7-acetylhorminone from crude extract of Premna obtusifolia (Indian headache tree), which is active against colorectal cancer after probation through computational screening methods as it passed through the set parameters of pharmacokinetics (most important nonblood-brain barrier permeant) and drug likeliness (e.g., Lipinski's, Ghose's, Veber's rule) which most other phytoconstituents failed to pass combined with docking with EGFR protein which is highly upregulated in the colorectal carcinoma cell. The structure of 7-acetylhorminone was confirmed by single crystal X-ray diffraction studies and 1H NMR, 13C NMR, and COSY studies. To validate the theoretical studies, first, in vitro experiments were carried out against human colorectal carcinoma cell lines (HCT116) which revealed the potent cytotoxic efficacy of 7-acetylhorminone and verified preliminary investigation. Second, the drugability of 7-acetylhorminone interaction with serum albumin proteins (HSA and BSA) is evaluated both theoretically and experimentally via steady-state fluorescence spectroscopic studies, circular dichroism, isothermal titration calorimetry, and molecular docking. In summary, this study reveals the applicability of 7-acetylhorminone as a potent drug candidate or as a combinatorial drug against colorectal cancer.


Asunto(s)
Neoplasias Colorrectales , Albúmina Sérica Bovina , Humanos , Neoplasias Colorrectales/tratamiento farmacológico , Neoplasias Colorrectales/metabolismo , Neoplasias Colorrectales/patología , Albúmina Sérica Bovina/metabolismo , Albúmina Sérica Bovina/química , Ensayos de Selección de Medicamentos Antitumorales , Productos Biológicos/química , Productos Biológicos/farmacología , Estructura Molecular , Ensayo de Materiales , Materiales Biocompatibles/química , Materiales Biocompatibles/farmacología , Antineoplásicos/farmacología , Antineoplásicos/química , Células HCT116 , Proliferación Celular/efectos de los fármacos , Simulación del Acoplamiento Molecular , Supervivencia Celular/efectos de los fármacos , Albúmina Sérica Humana/química , Albúmina Sérica Humana/metabolismo
11.
Comput Methods Programs Biomed ; 232: 107436, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-36870167

RESUMEN

BACKGROUND AND OBJECTIVES: The application of intelligent imaging techniques and deep learning in the field of computer-aided diagnosis and medical imaging have improved and accelerated the early diagnosis of many diseases. Elastography is an imaging modality where an inverse problem is solved to extract the elastic properties of tissues and subsequently mapped to anatomical images for diagnostic purposes. In the present work, we propose a wavelet neural operator-based approach for correctly learning the non-linear mapping of elastic properties directly from measured displacement field data. METHODS: The proposed framework learns the underlying operator behind the elastic mapping and thus can map any displacement data from a family to the elastic properties. The displacement fields are first uplifted to a high-dimensional space using a fully connected neural network. On the lifted data, certain iterations are performed using wavelet neural blocks. In each wavelet neural block, the lifted data are decomposed into low, and high-frequency components using wavelet decomposition. To learn the most relevant patterns and structural information from the input, the neural network kernels are directly convoluted with the outputs of the wavelet decomposition. Thereafter the elasticity field is reconstructed from the outputs from convolution. The mapping between the displacement and the elasticity using wavelets is unique and remains stable during training. RESULTS: The proposed framework is tested on several artificially fabricated numerical examples, including a benign-cum-malignant tumor prediction problem. The trained model was also tested on real Ultrasound-based elastography data to demonstrate the applicability of the proposed scheme in clinical usage. The proposed framework reproduces the highly accurate elasticity field directly from the displacement inputs. CONCLUSIONS: The proposed framework circumvents different data pre-processing and intermediate steps utilized in traditional methods, hence providing an accurate elasticity map. The computationally efficient framework requires fewer epochs for training, which bodes well for its clinical usability for real-time predictions. The weights and biases from pre-trained models can also be employed for transfer learning, which reduces the effective training time with random initialization.


Asunto(s)
Diagnóstico por Imagen de Elasticidad , Neoplasias , Humanos , Diagnóstico por Imagen de Elasticidad/métodos , Redes Neurales de la Computación , Elasticidad , Neoplasias/diagnóstico por imagen , Diagnóstico por Computador
12.
Microbiol Resour Announc ; 12(11): e0050923, 2023 Nov 16.
Artículo en Inglés | MEDLINE | ID: mdl-37931138

RESUMEN

Understanding microbe-host interactions is key to combating disease transmission by mosquitoes. Here, we report the genome sequence of Asaia bogorensis strain SC1 isolated from a human-blood-fed Aedes aegypti mosquito crop. Metabolic pathway characteristics of aerobic respiration were present in the genome, along with multiple putative antibiotic resistance mechanisms.

13.
Heliyon ; 9(9): e19692, 2023 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-37810121

RESUMEN

Almost all perishable crops deteriorate due to improper and tardy transportation and storage. Vehicle Routing Problem, or VRP, might be of great aid since it takes into account a number of aspects of any transportation and storage issues and optimizes them in such a way as to reduce the overall cost of the carrier. This study attempts to widen the scope of the commonly used VRP model by including traffic and energy consumption features and transforming it into the Aggregated Vehicle Routing Problem (AVRP). Traditional VRP focuses on minimizing distance. Generally, it is unable to find out the optimal number of aggregation points required to serve a system. So, cost optimization of the AVRP approach was designed with two specialized steps. Firstly, the destination data are divided into multiple clusters employing the X-means clustering. And then the best route was found to execute the delivery thus minimizing cost, required time, and carbon footprint. The study was implemented on the Chattogram zone and discovered that the optimal number of aggregation points (AP) required to serve Chattogram is only three namely- AP 1, AP 2, and AP 3. VRP analysis was stretched further with AVRP model using AP 1 and found to reduce the operating cost by 10.96%.

14.
J Colloid Interface Sci ; 635: 197-207, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-36587573

RESUMEN

HYPOTHESIS: Underwater oil-repellency of polyelectrolyte brushes has been attributed mainly to electric double-layer repulsion forces based on Derjaguin-Landau-Verwey-Overbeek (DLVO) theory. Many non-polyelectrolyte materials also exhibit oil-repellent behaviour, but it is not clear if there exist similar electric double-layer repulsion and if it is the sole mechanism governing their underwater oil-repellency. EXPERIMENTS/SIMULATIONS: In this article, the oil-repellency of highly amorphous cellulose exhibiting is investigated in detail, through experiments and molecular dynamics simulations (MDS). FINDINGS: It was found that the stable surface hydration on regenerated cellulose was due to a combination of long-range electrostatic repulsions (DLVO theory) and short-range interfacial hydrogen bonding between cellulose and water molecules (as revealed by MDS). The presence of a stable water layer of about 200 nm thick (similar to that of polyelectrolyte brushes) was confirmed. Such stable surface hydration effectively separates cellulose surface from oil droplets, resulting in extremely low adhesion between them. As a demonstration of its practicality, regenerated cellulose membranes were fabricated via electrospinning, and they exhibit high oil/water separation efficiencies (including oil-in-water emulsions) as well as self-cleaning ability.

15.
J Biomol Struct Dyn ; : 1-30, 2023 Dec 07.
Artículo en Inglés | MEDLINE | ID: mdl-38059345

RESUMEN

This study presents a robust and integrated methodology that harnesses a range of computational techniques to facilitate the design and prediction of new inhibitors targeting the JAK3/STAT pathway. This methodology encompasses several strategies, including QSAR analysis, pharmacophore modeling, ADMET prediction, covalent docking, molecular dynamics (MD) simulations, and the calculation of binding free energies (MM/GBSA). An efficacious QSAR model was meticulously crafted through the employment of multiple linear regression (MLR). The initial MLR model underwent further refinement employing an artificial neural network (ANN) methodology aimed at minimizing predictive errors. Notably, both MLR and ANN exhibited commendable performance, showcasing R2 values of 0.89 and 0.95, respectively. The model's precision was assessed via leave-one-out cross-validation (CV) yielding a Q2 value of 0.65, supplemented by rigorous Y-randomization. , The pharmacophore model effectively differentiated between active and inactive drugs, identifying potential JAK3 inhibitors, and demonstrated validity with an ROC value of 0.86. The newly discovered and designed inhibitors exhibited high inhibitory potency, ranging from 6 to 8, as accurately predicted by the QSAR models. Comparative analysis with FDA-approved Tofacitinib revealed that the new compounds exhibited promising ADMET properties and strong covalent docking (CovDock) interactions. The stability of the new discovered and designed inhibitors within the JAK3 binding site was confirmed through 500 ns MD simulations, while MM/GBSA calculations supported their binding affinity. Additionally, a retrosynthetic study was conducted to facilitate the synthesis of these potential JAK3/STAT inhibitors. The overall integrated approach demonstrates the feasibility of designing novel JAK3/STAT inhibitors with robust efficacy and excellent ADMET characteristics that surpass Tofacitinib by a significant margin.Communicated by Ramaswamy H. Sarma.

16.
Traffic ; 11(5): 706-20, 2010 May.
Artículo en Inglés | MEDLINE | ID: mdl-20088845

RESUMEN

Cubam is a multi-ligand receptor involved in dietary uptake of intrinsic factor-vitamin B(12) in the small intestine and reabsorption of various low-molecular-weight proteins (such as albumin, transferrin, apolipoprotein A-I and vitamin D-binding protein) in the kidney. Cubam is composed of two proteins: cubilin and amnionless. Cubilin harbors ligand binding capabilities, while amnionless provides membrane anchorage and potential endocytic capacity via two FXNPXF signals within the cytosolic domain. These signals are similar to the FXNPXY signals found in members of the low-density lipoprotein receptor superfamily, which associate with clathrin-associated sorting proteins, including Disabled-2 (Dab2) and autosomal recessive hypercholesterolemia (ARH), during endocytosis. We therefore investigated the functionality of each amnionless FXNPXF signal and their respective interaction with sorting proteins. By sequential mutation and expression of a panel of amnionless mutants combined with yeast two-hybrid analyses, we demonstrate that the signals are functionally redundant and both are able to mediate endocytosis of cubam through interaction with Dab2 and ARH.


Asunto(s)
Proteínas Adaptadoras del Transporte Vesicular/metabolismo , Proteínas/metabolismo , Proteínas Adaptadoras del Transporte Vesicular/genética , Animales , Apolipoproteína A-I/genética , Apolipoproteína A-I/metabolismo , Cricetinae , Endocitosis/genética , Endocitosis/fisiología , Humanos , Hipercolesterolemia/genética , Factor Intrinseco/genética , Factor Intrinseco/metabolismo , Mutación , Unión Proteica/genética , Transporte de Proteínas/genética , Proteínas/genética , Receptores de Superficie Celular , Receptores de LDL/química , Receptores de LDL/genética , Receptores de LDL/metabolismo , Transducción de Señal/genética , Vitamina B 12/genética , Proteína de Unión a Vitamina D/genética , Proteína de Unión a Vitamina D/metabolismo
17.
iScience ; 25(11): 105452, 2022 Nov 18.
Artículo en Inglés | MEDLINE | ID: mdl-36388999

RESUMEN

Increased demands for high-performance materials have led to advanced composite materials with complex hierarchical designs. However, designing a tailored material microstructure with targeted properties and performance is extremely challenging due to the innumerable design combinations and prohibitive computational costs for physics-based solvers. In this study, we employ a neural operator-based framework, namely Fourier neural operator (FNO), to learn the mechanical response of 2D composites. We show that the FNO exhibits high-fidelity predictions of the complete stress and strain tensor fields for geometrically complex composite microstructures with very few training data and purely based on the microstructure. The model also exhibits zero-shot generalization on unseen arbitrary geometries with high accuracy. Furthermore, the model exhibits zero-shot super-resolution capabilities by predicting high-resolution stress and strain fields directly from low-resolution input configurations. Finally, the model also provides high-accuracy predictions of equivalent measures for stress-strain fields, allowing realistic upscaling of the results.

18.
Ticks Tick Borne Dis ; 13(6): 102033, 2022 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-36099731

RESUMEN

The American dog tick, Dermacentor variabilis, is a major pest to humans and animals, serving as a vector to Rickettsia rickettsii, a bacterium responsible for Rocky Mountain spotted fever, and Francisella tularensis, which is responsible for tularemia. Although several tactics for management have been deployed, very little is known about the molecular response following pesticidal treatments in ticks. In this study, we used a combined approach utilizing transcriptomics and metabolomics to understand the response of the American dog tick to five common pesticides (amitraz, chlorpyrifos, fipronil, permethrin, and propoxur), and analyzed previous experimental data utilizing DEET repellent. Exposure to different chemicals led to significant differential expression of a varying number of transcripts, where 42 were downregulated and only one was upregulated across all treatments. A metabolomic analysis identified significant changes in acetate and aspartate levels following exposure to chlorpyrifos and propoxur, which was attributed to reduced cholinesterase activity. Integrating the metabolomics study with RNA-seq analysis, we found the physiological manifestations of the combined metabolic and transcriptional differences, revealing several novel biomolecular pathways. In particular, we discovered the downregulation of amino sugar metabolism and methylhistidine metabolism after permethrin exposure, as well as an upregulation of glutamate metabolism in amitraz treated samples. Understanding these altered biochemical pathways following pesticide and repellent exposure can help us formulate more effective chemical treatments to reduce the burden of ticks.

19.
Gels ; 8(5)2022 May 19.
Artículo en Inglés | MEDLINE | ID: mdl-35621614

RESUMEN

Gels are semisolid, homogeneous systems with continuous or discrete therapeutic molecules in a suitable lipophilic or hydrophilic three-dimensional network base. Innovative gel systems possess multipurpose applications in cosmetics, food, pharmaceuticals, biotechnology, and so forth. Formulating a gel-based delivery system is simple and the delivery system enables the release of loaded therapeutic molecules. Furthermore, it facilitates the delivery of molecules via various routes as these gel-based systems offer proximal surface contact between a loaded therapeutic molecule and an absorption site. In the past decade, researchers have potentially explored and established a significant understanding of gel-based delivery systems for drug delivery. Subsequently, they have enabled the prospects of developing novel gel-based systems that illicit drug release by specific biological or external stimuli, such as temperature, pH, enzymes, ultrasound, antigens, etc. These systems are considered smart gels for their broad applications. This review reflects the significant role of advanced gel-based delivery systems for various therapeutic benefits. This detailed discussion is focused on strategies for the formulation of different novel gel-based systems, as well as it highlights the current research trends of these systems and patented technologies.

20.
J Biol Chem ; 285(14): 10761-76, 2010 Apr 02.
Artículo en Inglés | MEDLINE | ID: mdl-20086013

RESUMEN

It is as yet unknown how the assembly of connexins (Cx) into gap junctions (GJ) is initiated upon cell-cell contact. We investigated whether the trafficking and assembly of Cx43 and Cx32 into GJs were contingent upon cell-cell adhesion mediated by E-cadherin. We also examined the role of the carboxyl termini of these Cxs in initiating the formation of GJs. Using cadherin and Cx-null cells, and by introducing Cx43 and Cx32, either alone or in combination with E-cadherin, our studies demonstrated that E-cadherin-mediated cell-cell adhesion was neither essential nor sufficient to initiate GJ assembly de novo in A431D human squamous carcinoma cells. However, E-cadherin facilitated the growth and assembly of preformed GJs composed of Cx43, although the growth of cells on Transwell filters was required to initiate the assembly of Cx32. Our results also documented that the carboxyl termini of both Cxs were required in this cell type to initiate the formation of GJs de novo. Our findings also showed that GJ puncta composed of Cx43 co-localized extensively with ZO-1 and actin fibers at cell peripheries and that ZO-1 knockdown attenuated Cx43 assembly. These findings suggest that the assembly of Cx43 and Cx32 into GJs is differentially modulated by E-cadherin-mediated cell-cell adhesion and that direct or indirect cross-talk between carboxyl tails of Cxs and actin cytoskeleton via ZO-1 may regulate GJ assembly and growth.


Asunto(s)
Cadherinas/metabolismo , Carcinoma de Células Escamosas/metabolismo , Adhesión Celular , Conexina 43/metabolismo , Conexinas/metabolismo , Uniones Comunicantes/fisiología , Actinas/metabolismo , Biotinilación , Western Blotting , Cadherinas/genética , Carcinoma de Células Escamosas/genética , Carcinoma de Células Escamosas/patología , Comunicación Celular , Permeabilidad de la Membrana Celular , Conexina 43/genética , Conexinas/genética , Humanos , Técnicas para Inmunoenzimas , Proteínas de la Membrana/antagonistas & inhibidores , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Fosfoproteínas/antagonistas & inhibidores , Fosfoproteínas/genética , Fosfoproteínas/metabolismo , ARN Mensajero/genética , ARN Mensajero/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Transducción de Señal , Fracciones Subcelulares , Células Tumorales Cultivadas , Proteína de la Zonula Occludens-1 , Proteína beta1 de Unión Comunicante
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