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1.
Eur Respir J ; 63(6)2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38609097

RESUMEN

BACKGROUND: International guidelines recommend airway clearance management as one of the important pillars of bronchiectasis treatment. However, the extent to which airway clearance is used for people with bronchiectasis in Europe is unclear. The aim of the study was to identify the use of airway clearance management in patients with bronchiectasis across different countries and factors influencing airway clearance use. METHODS: This was a prospective observational study using data from the European Multicentre Bronchiectasis Audit and Research Collaboration (EMBARC) Registry between January 2015 and April 2022. Prespecified options for airway clearance management were recorded, including airway clearance techniques, devices and use of mucoactive drugs. RESULTS: 16 723 people with bronchiectasis from 28 countries were included in the study. The mean age was 67 years (interquartile range 57-74 years, range 18-100 years) and 61% were female. 72% of the participants reported daily sputum expectoration and 52% (95% CI 51-53%) of all participants reported using regular airway clearance management. Active cycle of breathing technique was used by 28% of the participants and airway clearance devices by 16% of participants. The frequency of airway clearance management and techniques used varied significantly between different countries. Participants who used airway clearance management had greater disease severity and worse symptoms, including a higher daily sputum volume, compared to those who did not use it regularly. Mucoactive drugs were also more likely to be used in participants with more severe disease. Access to specialist respiratory physiotherapy was low throughout Europe, but particularly low in Eastern Europe. CONCLUSIONS: Only a half of people with bronchiectasis in Europe use airway clearance management. Use of and access to devices, mucoactive drugs and specialist chest physiotherapy appears to be limited in many European countries.


Asunto(s)
Bronquiectasia , Sistema de Registros , Humanos , Bronquiectasia/terapia , Bronquiectasia/fisiopatología , Femenino , Persona de Mediana Edad , Masculino , Anciano , Europa (Continente) , Adulto , Estudios Prospectivos , Adolescente , Adulto Joven , Anciano de 80 o más Años , Manejo de la Vía Aérea/métodos , Terapia Respiratoria/métodos , Expectorantes/uso terapéutico
2.
J Therm Biol ; 119: 103762, 2024 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-38071898

RESUMEN

Predicting ecological responses to rapid environmental change has become one of the greatest challenges of modern biology. One of the major hurdles in forecasting these responses is accurately quantifying the thermal environments that organisms experience. The distribution of temperatures available within an organism's habitat is typically measured using data loggers called operative temperature models (OTMs) that are designed to mimic certain properties of heat exchange in the focal organism. The gold standard for OTM construction in studies of terrestrial ectotherms has been the use of copper electroforming which creates anatomically accurate models that equilibrate quickly to ambient thermal conditions. However, electroformed models require the use of caustic chemicals, are often brittle, and their production is expensive and time intensive. This has resulted in many researchers resorting to the use of simplified OTMs that can yield substantial measurement errors. 3D printing offers the prospect of robust, easily replicated, morphologically accurate, and cost-effective OTMs that capture the benefits but alleviate the problems associated with electroforming. Here, we validate the use of OTMs that were 3D printed using several materials across eight lizard species of different body sizes and living in habitats ranging from deserts to tropical forests. We show that 3D printed OTMs have low thermal inertia and predict the live animal's equilibration temperature with high accuracy across a wide range of body sizes and microhabitats. Finally, we developed a free online repository and database of 3D scans (https://www.3dotm.org/) to increase the accessibility of this tool to researchers around the world and facilitate ease of production of 3D printed models. 3D printing of OTMs is generalizable to taxa beyond lizards. If widely adopted, this approach promises greater accuracy and reproducibility in studies of terrestrial thermal ecology and should lead to improved forecasts of the biological impacts of climate change.


Asunto(s)
Regulación de la Temperatura Corporal , Lagartos , Animales , Análisis Costo-Beneficio , Reproducibilidad de los Resultados , Temperatura Corporal , Temperatura , Ecosistema , Lagartos/fisiología , Impresión Tridimensional
3.
J Biol Chem ; 298(9): 102249, 2022 09.
Artículo en Inglés | MEDLINE | ID: mdl-35835215

RESUMEN

Isopenicillin N synthase (IPNS) catalyzes formation of the ß-lactam and thiazolidine rings of isopenicillin N from its linear tripeptide l-δ-(α-aminoadipoyl)-l-cysteinyl-d-valine (ACV) substrate in an iron- and dioxygen (O2)-dependent four-electron oxidation without precedent in current synthetic chemistry. Recent X-ray free-electron laser studies including time-resolved serial femtosecond crystallography show that binding of O2 to the IPNS-Fe(II)-ACV complex induces unexpected conformational changes in α-helices on the surface of IPNS, in particular in α3 and α10. However, how substrate binding leads to conformational changes away from the active site is unknown. Here, using detailed 19F NMR and electron paramagnetic resonance experiments with labeled IPNS variants, we investigated motions in α3 and α10 induced by binding of ferrous iron, ACV, and the O2 analog nitric oxide, using the less mobile α6 for comparison. 19F NMR studies were carried out on singly and doubly labeled α3, α6, and α10 variants at different temperatures. In addition, double electron-electron resonance electron paramagnetic resonance analysis was carried out on doubly spin-labeled variants. The combined spectroscopic and crystallographic results reveal that substantial conformational changes in regions of IPNS including α3 and α10 are induced by binding of ACV and nitric oxide. Since IPNS is a member of the structural superfamily of 2-oxoglutarate-dependent oxygenases and related enzymes, related conformational changes may be of general importance in nonheme oxygenase catalysis.


Asunto(s)
Oxidorreductasas , Dominio Catalítico , Espectroscopía de Resonancia por Spin del Electrón , Compuestos Ferrosos/química , Hierro/química , Óxido Nítrico/química , Oxidorreductasas/química , Oxidorreductasas/genética , Oxígeno/química , Oxigenasas/metabolismo , Penicilinas/biosíntesis , Penicilinas/química , Conformación Proteica , Especificidad por Sustrato , Tiazolidinas/química
4.
Chembiochem ; 24(4): e202200576, 2023 02 14.
Artículo en Inglés | MEDLINE | ID: mdl-36448355

RESUMEN

Transient receptor potential (TRP) channels have important roles in environmental sensing in animals. Human TRP subfamily A member 1 (TRPA1) is responsible for sensing allyl isothiocyanate (AITC) and other electrophilic sensory irritants. TRP subfamily vanilloid member 3 (TRPV3) is involved in skin maintenance. TRPV3 is a reported substrate of the 2-oxoglutarate oxygenase factor inhibiting hypoxia-inducible factor (FIH). We report biochemical and structural studies concerning asparaginyl hydroxylation of the ankyrin repeat domains (ARDs) of TRPA1 and TRPV3 catalysed by FIH. The results with ARD peptides support a previous report on FIH-catalysed TRPV3 hydroxylation and show that, of the 12 potential TRPA1 sequences investigated, one sequence (TRPA1 residues 322-348) undergoes hydroxylation at Asn336. Structural studies reveal that the TRPA1 and TRPV3 ARDs bind to FIH with a similar overall geometry to most other reported FIH substrates. However, the binding mode of TRPV3 to FIH is distinct from that of other substrates.


Asunto(s)
Repetición de Anquirina , Síndrome de Dificultad Respiratoria , Humanos , Animales , Proteínas Represoras/metabolismo , Secuencia de Aminoácidos , Hidroxilación , Oxigenasas de Función Mixta/metabolismo , Unión Proteica , Subunidad alfa del Factor 1 Inducible por Hipoxia/metabolismo
5.
J Asthma ; 59(5): 967-975, 2022 05.
Artículo en Inglés | MEDLINE | ID: mdl-33504229

RESUMEN

OBJECTIVE: The aim of this pilot validation study was to determine the accuracy of a smartphone (iPhone®) pedometer in adults with and without asthma. METHODS: Ten adults with asthma and ten healthy controls underwent clinical assessment prior to completing two separate trials. Phase 1. standardized treadmill and self-paced walking tests. Total steps were recorded via: (i) Yamax Digiwalker™ SW800 pedometer positioned on the waistband, (ii) iPhone® pedometer positioned on the upper body, (iii) iPhone® pedometer positioned on the lower body and evaluated against a video-verified manual step-count. Phase 2. step-count was evaluated over seven-days during habitual free-living conditions via Yamax Digiwalker™ SW800 and iPhone® pedometers. RESULTS: During treadmill walking, the iPhone® positioned on the lower body correlated strongly (r = 0.96) and produced the highest level of agreement (mean bias: -11 steps, LOA: -43 to 21 steps) in comparison to video-verified manual step-count. During self-paced walking, all devices provided an excellent step-count estimate. During free-living conditions, no difference was observed between the Yamax Digiwalker™ SW800 pedometer and iPhone® (P = 0.10) and a strong correlation (r = 0.94) and acceptable agreement (mean bias: -343, LOA: -1963 to 1276 steps) was observed. CONCLUSION: Our findings indicate that an in-built iPhone® pedometer offers a practical approach to physical activity assessment in adults with and without asthma. Future research is now required to further validate the precision of this approach and evaluate the efficacy and effectiveness of smartphone pedometers to monitor and promote physical activity when employed during medical consultation and/or clinical research trials.


Asunto(s)
Actigrafía , Asma , Adulto , Asma/diagnóstico , Asma/terapia , Ejercicio Físico , Humanos , Teléfono Inteligente , Caminata
6.
Indoor Air ; 32(1): e12938, 2022 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-34693567

RESUMEN

Self-contamination during doffing of personal protective equipment (PPE) is a concern for healthcare workers (HCW) following SARS-CoV-2-positive patient care. Staff may subconsciously become contaminated through improper glove removal; so, quantifying this exposure is critical for safe working procedures. HCW surface contact sequences on a respiratory ward were modeled using a discrete-time Markov chain for: IV-drip care, blood pressure monitoring, and doctors' rounds. Accretion of viral RNA on gloves during care was modeled using a stochastic recurrence relation. In the simulation, the HCW then doffed PPE and contaminated themselves in a fraction of cases based on increasing caseload. A parametric study was conducted to analyze the effect of: (1a) increasing patient numbers on the ward, (1b) the proportion of COVID-19 cases, (2) the length of a shift, and (3) the probability of touching contaminated PPE. The driving factors for the exposure were surface contamination and the number of surface contacts. The results simulate generally low viral exposures in most of the scenarios considered including on 100% COVID-19 positive wards, although this is where the highest self-inoculated dose is likely to occur with median 0.0305 viruses (95% CI =0-0.6 viruses). Dose correlates highly with surface contamination showing that this can be a determining factor for the exposure. The infection risk resulting from the exposure is challenging to estimate, as it will be influenced by the factors such as virus variant and vaccination rates.


Asunto(s)
Contaminación del Aire Interior , COVID-19 , Fómites , Exposición Profesional , Equipo de Protección Personal , Fómites/virología , Guantes Protectores/virología , Hospitales , Humanos , Equipo de Protección Personal/virología , SARS-CoV-2
7.
J Therm Biol ; 108: 103291, 2022 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-36031212

RESUMEN

Thermal acclimatization, plastic shifts in thermal physiology in response to recent climatic conditions, is thought to be adaptive in highly seasonal environments where thermal variability is high but predictable. Thus, lizards from mid-latitude, desert environments should exhibit plasticity in their thermal tolerance limits, the upper (CTmax) and lower (CTmin) body temperatures they can withstand while maintaining physiological functioning, associated with changes in seasonal changes in climatic variation (i.e., when daily fluctuations in temperature are greater, lizards should have wider thermal tolerance breadths [CTmax-CTmin]). We measured the thermal tolerance limits of two Phrynosomatid lizard species, Uta stansburiana and Sceloporus tristichus, occurring in sympatry at three time points to test for temporal variation in thermal physiology in response to climatic variation. We found that lizards of both species measured during times when climatic variability was high had wider thermal tolerance breadths than lizards measured when climatic variability was lower. While CTmax was largely invariable, CTmin varied in response to minimum air temperature, driving the observed difference in thermal tolerance breadth among the sampling periods.


Asunto(s)
Lagartos , Aclimatación , Animales , Regulación de la Temperatura Corporal , Simpatría , Temperatura
8.
Indoor Air ; 31(5): 1657-1672, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-33913202

RESUMEN

Healthcare professionals (HCPs) are exposed to highly infectious viruses, such as norovirus, through multiple exposure routes. Understanding exposure mechanisms will inform exposure mitigation interventions. The study objective was to evaluate the influences of hospital patient room layout on differences in HCPs' predicted hand contamination from deposited norovirus particles. Computational fluid dynamic (CFD) simulations of a hospital patient room were investigated to find differences in spatial deposition patterns of bioaerosols for right-facing and left-facing bed layouts under different ventilation conditions. A microbial transfer model underpinned by observed mock care for three care types (intravenous therapy (IV) care, observational care, and doctors' rounds) was applied to estimate HCP hand contamination. Viral accruement was contrasted between room orientation, care type, and by assumptions about whether bioaerosol deposition was the same or variable by room orientation. Differences in sequences of surface contacts were observed for care type and room orientation. Simulated viral accruement differences between room types were influenced by mostly by differences in bioaerosol deposition and by behavior sequences when deposition patterns for the room orientations were similar. Differences between care types were likely driven by differences in hand-to-patient contact frequency, with doctors' rounds resulting in the greatest predicted viral accruement on hands.


Asunto(s)
Contaminación del Aire Interior , Habitaciones de Pacientes , Ventilación , Infección Hospitalaria , Atención a la Salud , Mano , Personal de Salud , Hospitales , Humanos
9.
Nature ; 510(7505): 422-426, 2014 Jun 19.
Artículo en Inglés | MEDLINE | ID: mdl-24814345

RESUMEN

2-Oxoglutarate (2OG)-dependent oxygenases have important roles in the regulation of gene expression via demethylation of N-methylated chromatin components and in the hydroxylation of transcription factors and splicing factor proteins. Recently, 2OG-dependent oxygenases that catalyse hydroxylation of transfer RNA and ribosomal proteins have been shown to be important in translation relating to cellular growth, TH17-cell differentiation and translational accuracy. The finding that ribosomal oxygenases (ROXs) occur in organisms ranging from prokaryotes to humans raises questions as to their structural and evolutionary relationships. In Escherichia coli, YcfD catalyses arginine hydroxylation in the ribosomal protein L16; in humans, MYC-induced nuclear antigen (MINA53; also known as MINA) and nucleolar protein 66 (NO66) catalyse histidine hydroxylation in the ribosomal proteins RPL27A and RPL8, respectively. The functional assignments of ROXs open therapeutic possibilities via either ROX inhibition or targeting of differentially modified ribosomes. Despite differences in the residue and protein selectivities of prokaryotic and eukaryotic ROXs, comparison of the crystal structures of E. coli YcfD and Rhodothermus marinus YcfD with those of human MINA53 and NO66 reveals highly conserved folds and novel dimerization modes defining a new structural subfamily of 2OG-dependent oxygenases. ROX structures with and without their substrates support their functional assignments as hydroxylases but not demethylases, and reveal how the subfamily has evolved to catalyse the hydroxylation of different residue side chains of ribosomal proteins. Comparison of ROX crystal structures with those of other JmjC-domain-containing hydroxylases, including the hypoxia-inducible factor asparaginyl hydroxylase FIH and histone N(ε)-methyl lysine demethylases, identifies branch points in 2OG-dependent oxygenase evolution and distinguishes between JmjC-containing hydroxylases and demethylases catalysing modifications of translational and transcriptional machinery. The structures reveal that new protein hydroxylation activities can evolve by changing the coordination position from which the iron-bound substrate-oxidizing species reacts. This coordination flexibility has probably contributed to the evolution of the wide range of reactions catalysed by oxygenases.


Asunto(s)
Eucariontes/enzimología , Modelos Moleculares , Oxigenasas/química , Células Procariotas/enzimología , Ribosomas/enzimología , Secuencia de Aminoácidos , Dominio Catalítico , Secuencia Conservada , Eucariontes/clasificación , Humanos , Oxigenasas/metabolismo , Filogenia , Células Procariotas/clasificación , Pliegue de Proteína , Estructura Terciaria de Proteína , Alineación de Secuencia
10.
J Therm Biol ; 84: 74-82, 2019 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-31466792

RESUMEN

A variety of phenotypic traits in reptiles are affected by conditions during embryonic development, a phenomenon known as developmental plasticity. In particular, many traits in which expression changes with temperature, such as locomotor performance or growth rates, are also developmentally plastic. However, much less is known about the extent to which traits associated with thermal ecology, such as thermal tolerance and behavioral thermoregulation, are developmentally plastic. Here, we review the literature on developmental plasticity in physiological and behavioral traits associated with thermal ecology in reptiles. Most studies on developmental plasticity of thermal traits have assessed plasticity in behavioral traits, such as selected temperature or time spent basking, and these studies have found mixed support for the presence of developmental plasticity in behavioral thermal traits. In contrast, very few studies have assessed developmental plasticity in physiological traits, yet these studies generally support a developmentally plastic basis for thermal tolerance. Most studies have only tested for developmental plasticity in thermal ecology traits at the hatchling stage, which limits our understanding of the benefits of developmental plasticity to individuals, or the adaptive significance of developmental plasticity in populations. We recommend that research on developmental plasticity in reptile thermal ecology be expanded to include incubation conditions other than mean temperature, consider traits associated with cold-tolerance, and endeavor to understand how developmental plasticity in thermal ecology traits is beneficial. In particular, determining how long differences persist over ontogeny, and testing for benefits of developmental plasticity across multiple life stages, are crucial first steps towards understanding the adaptive significance of developmental plasticity in thermal ecology traits.


Asunto(s)
Adaptación Fisiológica , Reptiles/fisiología , Animales , Investigación
11.
Chemistry ; 23(52): 12815-12824, 2017 Sep 18.
Artículo en Inglés | MEDLINE | ID: mdl-28703303

RESUMEN

Isopenicillin N synthase (IPNS) catalyses the four-electron oxidation of a tripeptide, l-δ-(α-aminoadipoyl)-l-cysteinyl-d-valine (ACV), to give isopenicillin N (IPN), the first-formed ß-lactam in penicillin and cephalosporin biosynthesis. IPNS catalysis is dependent upon an iron(II) cofactor and oxygen as a co-substrate. In the absence of substrate, the carbonyl oxygen of the side-chain amide of the penultimate residue, Gln330, co-ordinates to the active-site metal iron. Substrate binding ablates the interaction between Gln330 and the metal, triggering rearrangement of seven C-terminal residues, which move to take up a conformation that extends the final α-helix and encloses ACV in the active site. Mutagenesis studies are reported, which probe the role of the C-terminal and other aspects of the substrate binding pocket in IPNS. The hydrophobic nature of amino acid side-chains around the ACV binding pocket is important in catalysis. Deletion of seven C-terminal residues exposes the active site and leads to formation of a new type of thiol oxidation product. The isolated product is shown by LC-MS and NMR analyses to be the ene-thiol tautomer of a dithioester, made up from two molecules of ACV linked between the thiol sulfur of one tripeptide and the oxidised cysteinyl ß-carbon of the other. A mechanism for its formation is proposed, supported by an X-ray crystal structure, which shows the substrate ACV bound at the active site, its cysteinyl ß-carbon exposed to attack by a second molecule of substrate, adjacent. Formation of this product constitutes a new mode of reaction for IPNS and non-heme iron oxidases in general.


Asunto(s)
Aldehídos/metabolismo , Ésteres/metabolismo , Oxidorreductasas/metabolismo , Compuestos de Sulfhidrilo/química , Aldehídos/química , Sitios de Unión , Biocatálisis , Dominio Catalítico , Cefalosporinas/biosíntesis , Cefalosporinas/química , Cromatografía Líquida de Alta Presión , Cristalografía por Rayos X , Ésteres/química , Hierro/química , Espectroscopía de Resonancia Magnética , Espectrometría de Masas , Conformación Molecular , Mutagénesis , Oxidación-Reducción , Oxidorreductasas/genética , Oxígeno/química , Oxígeno/metabolismo , Penicilinas/biosíntesis , Penicilinas/química , Especificidad por Sustrato
12.
Org Biomol Chem ; 15(28): 6024-6032, 2017 Jul 19.
Artículo en Inglés | MEDLINE | ID: mdl-28678295

RESUMEN

The class D (OXA) serine ß-lactamases are a major cause of resistance to ß-lactam antibiotics. The class D enzymes are unique amongst ß-lactamases because they have a carbamylated lysine that acts as a general acid/base in catalysis. Previous crystallographic studies led to the proposal that ß-lactamase inhibitor avibactam targets OXA enzymes in part by promoting decarbamylation. Similarly, halide ions are proposed to inhibit OXA enzymes via decarbamylation. NMR analyses, in which the carbamylated lysines of OXA-10, -23 and -48 were 13C-labelled, indicate that reaction with avibactam does not ablate lysine carbamylation in solution. While halide ions did not decarbamylate the 13C-labelled OXA enzymes in the absence of substrate or inhibitor, avibactam-treated OXA enzymes were susceptible to decarbamylation mediated by halide ions, suggesting halide ions may inhibit OXA enzymes by promoting decarbamylation of acyl-enzyme complex. Crystal structures of the OXA-10 avibactam complex were obtained with bromide, iodide, and sodium ions bound between Trp-154 and Lys-70. Structures were also obtained wherein bromide and iodide ions occupy the position expected for the 'hydrolytic water' molecule. In contrast with some solution studies, Lys-70 was decarbamylated in these structures. These results reveal clear differences between crystallographic and solution studies on the interaction of class D ß-lactamases with avibactam and halides, and demonstrate the utility of 13C-NMR for studying lysine carbamylation in solution.


Asunto(s)
Compuestos de Azabiciclo/farmacología , Halógenos/farmacología , Inhibidores de beta-Lactamasas/farmacología , beta-Lactamasas/metabolismo , Compuestos de Azabiciclo/química , Isótopos de Carbono , Cristalografía por Rayos X , Halógenos/química , Iones/química , Iones/farmacología , Modelos Moleculares , Conformación Molecular , Inhibidores de beta-Lactamasas/química
13.
PLoS One ; 19(5): e0304555, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38820269

RESUMEN

Inflammation is a key driver in the pathogenesis of cystic fibrosis (CF). We assessed the effectiveness of elexacaftor/tezacaftor/ivacaftor (ETI) therapy on downregulating systemic and immune cell-derived inflammatory cytokines. We also monitored the impact of ETI therapy on clinical outcome. Adults with CF, heterozygous for F508del (n = 19), were assessed at baseline, one month and three months following ETI therapy, and clinical outcomes were measured, including sweat chloride, lung function, weight, neutrophil count and C-reactive protein (CRP). Cytokine quantifications were measured in serum and following stimulation of peripheral blood mononuclear cells (PBMCs) with lipopolysaccharide (LPS) and adenosine triphosphate and analysed using LEGEND plex™ Human Inflammation Panel 1 by flow cytometry (n = 19). ASC specks were measured in serum and caspase-1 activity and mRNA levels determined from stimulated PBMCs were determined. Patients remained stable over the study period. ETI therapy resulted in decreased sweat chloride concentrations (p < 0.0001), CRP (p = 0.0112) and neutrophil count (p = 0.0216) and increased percent predicted forced expiratory volume (ppFEV1) (p = 0.0399) from baseline to three months, alongside a trend increase in weight. Three months of ETI significantly decreased IL-18 (p< 0.0011, p < 0.0001), IL-1ß (p<0.0013, p = 0.0476), IL-6 (p = 0.0109, p = 0.0216) and TNF (p = 0.0028, p = 0.0033) levels in CF serum and following PBMCs stimulation respectively. The corresponding mRNA levels were also found to be reduced in stimulated PBMCs, as well as reduced ASC specks and caspase-1 levels, indicative of NLRP3-mediated production of pro-inflammatory cytokines, IL-1ß and IL-18. While ETI therapy is highly effective at reducing sweat chloride and improving lung function, it also displays potent anti-inflammatory properties, which are likely to contribute to improved long-term clinical outcomes.


Asunto(s)
Aminofenoles , Antiinflamatorios , Benzodioxoles , Regulador de Conductancia de Transmembrana de Fibrosis Quística , Fibrosis Quística , Citocinas , Indoles , Quinolonas , Humanos , Fibrosis Quística/tratamiento farmacológico , Fibrosis Quística/genética , Benzodioxoles/uso terapéutico , Benzodioxoles/farmacología , Adulto , Aminofenoles/uso terapéutico , Femenino , Indoles/uso terapéutico , Indoles/farmacología , Masculino , Regulador de Conductancia de Transmembrana de Fibrosis Quística/genética , Quinolonas/uso terapéutico , Antiinflamatorios/uso terapéutico , Antiinflamatorios/farmacología , Citocinas/metabolismo , Citocinas/sangre , Pirazoles/uso terapéutico , Pirazoles/farmacología , Adulto Joven , Piridinas/uso terapéutico , Piridinas/farmacología , Leucocitos Mononucleares/metabolismo , Leucocitos Mononucleares/efectos de los fármacos , Proteína C-Reactiva/metabolismo , Pirroles/uso terapéutico , Pirroles/farmacología , Sudor/química , Sudor/metabolismo , Pirrolidinas
14.
Chembiochem ; 14(5): 599-606, 2013 Mar 18.
Artículo en Inglés | MEDLINE | ID: mdl-23468426

RESUMEN

Isopenicillin N synthase (IPNS) converts the linear tripeptide δ-(L-α-aminoadipoyl)-L-cysteinyl-D-valine (ACV) into bicyclic isopenicillin N (IPN) in the central step in the biosynthesis of penicillin and cephalosporin antibiotics. Solution-phase incubation experiments have shown that IPNS turns over analogues with a diverse range of side chains in the third (valinyl) position of the substrate, but copes less well with changes in the second (cysteinyl) residue. IPNS thus converts the homologated tripeptides δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-valine (AhCV) and δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-allylglycine (AhCaG) into monocyclic hydroxy-lactam products; this suggests that the additional methylene unit in these substrates induces conformational changes that preclude second ring closure after initial lactam formation. To investigate this and solution-phase results with other tripeptides δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-Xaa, we have crystallised AhCV and δ-(L-α-aminoadipoyl)-L-homocysteinyl-D-S-methylcysteine (AhCmC) with IPNS and solved crystal structures for the resulting complexes. The IPNS:Fe(II):AhCV complex shows diffuse electron density for several regions of the substrate, revealing considerable conformational freedom within the active site. The substrate is more clearly resolved in the IPNS:Fe(II):AhCmC complex, by virtue of thioether coordination to iron. AhCmC occupies two distinct conformations, both distorted relative to the natural substrate ACV, in order to accommodate the extra methylene group in the second residue. Attempts to turn these substrates over within crystalline IPNS using hyperbaric oxygenation give rise to product mixtures.


Asunto(s)
Homocisteína/química , Oxidorreductasas/metabolismo , Penicilinas/biosíntesis , Biocatálisis , Dominio Catalítico , Cristalografía por Rayos X , Compuestos Ferrosos/química , Homocisteína/metabolismo , Oligopéptidos/síntesis química , Oligopéptidos/química , Oligopéptidos/metabolismo , Oxidorreductasas/química , Especificidad por Sustrato
15.
Arch Biochem Biophys ; 530(1): 48-53, 2013 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-23262315

RESUMEN

Isopenicillin N synthase (IPNS) converts its linear tripeptide substrate δ-L-α-aminoadipoyl-L-cysteinyl-D-valine (ACV) to bicyclic isopenicillin N (IPN), the key step in penicillin biosynthesis. Solution-phase incubation experiments have shown that IPNS will accept and oxidise a diverse array of substrate analogues, including tripeptides that incorporate L-homocysteine as their second residue, and tripeptides with truncated side-chains at the third amino acid such as δ-L-α-aminoadipoyl-L-cysteinyl-D-α-aminobutyrate (ACAb), δ-L-α-aminoadipoyl-L-cysteinyl-D-alanine (ACA) and δ-L-α-aminoadipoyl-L-cysteinyl-glycine (ACG). However IPNS does not react with dipeptide substrates. To probe this selectivity we have crystallised the enzyme with the dipeptide δ-L-α-aminoadipoyl-L-homocysteine (AhC) and solved a crystal structure for the IPNS:Fe(II):AhC complex to 1.40 Å resolution. This structure reveals an unexpected mode of peptide binding at the IPNS active site, in which the homocysteinyl thiolate does not bind to iron. Instead the primary mode of binding sees the homocysteinyl carboxylate coordinated to the metal, while its side-chain is oriented into the region of the active site normally occupied by the benzyl group of protein residue Phe211.


Asunto(s)
Dipéptidos/química , Dipéptidos/metabolismo , Oxidorreductasas/química , Oxidorreductasas/metabolismo , Dominio Catalítico , Cristalografía por Rayos X , Homocisteína/química , Homocisteína/metabolismo , Hierro/metabolismo , Modelos Moleculares , Conformación Proteica , Eliminación de Secuencia
16.
EMBO Rep ; 12(5): 463-9, 2011 May.
Artículo en Inglés | MEDLINE | ID: mdl-21460794

RESUMEN

Mutations in isocitrate dehydrogenases (IDHs) have a gain-of-function effect leading to R(-)-2-hydroxyglutarate (R-2HG) accumulation. By using biochemical, structural and cellular assays, we show that either or both R- and S-2HG inhibit 2-oxoglutarate (2OG)-dependent oxygenases with varying potencies. Half-maximal inhibitory concentration (IC(50)) values for the R-form of 2HG varied from approximately 25 µM for the histone N(ɛ)-lysine demethylase JMJD2A to more than 5 mM for the hypoxia-inducible factor (HIF) prolyl hydroxylase. The results indicate that candidate oncogenic pathways in IDH-associated malignancy should include those that are regulated by other 2OG oxygenases than HIF hydroxylases, in particular those involving the regulation of histone methylation.


Asunto(s)
Glutaratos/metabolismo , Histona Demetilasas/antagonistas & inhibidores , Isocitrato Deshidrogenasa/genética , Modelos Moleculares , Neoplasias/enzimología , Transducción de Señal/fisiología , Línea Celular Tumoral , Cristalografía , Humanos , Concentración 50 Inhibidora , Isocitrato Deshidrogenasa/metabolismo , Histona Demetilasas con Dominio de Jumonji/antagonistas & inhibidores , Histona Demetilasas con Dominio de Jumonji/química , Espectroscopía de Resonancia Magnética , Espectrometría de Masas , Oxigenasas de Función Mixta , Mutación/genética , Neoplasias/genética , Procolágeno-Prolina Dioxigenasa/antagonistas & inhibidores , Proteínas Represoras/antagonistas & inhibidores , Proteínas Represoras/química
17.
Eur Respir Rev ; 32(167)2023 Mar 31.
Artículo en Inglés | MEDLINE | ID: mdl-36697208

RESUMEN

Physical inactivity is common in people with chronic airways disease (pwCAD) and associated with worse clinical outcomes and impaired quality of life. We conducted a systematic review and meta-analysis to characterise and evaluate the effectiveness of interventions promoting step-based physical activity (PA) in pwCAD. We searched for studies that included a form of PA promotion and step-count outcome measure. A random-effects model was used to determine the overall effect size using post-intervention values. 38 studies (n=32 COPD; n=5 asthma; n=1 bronchiectasis; study population: n=3777) were included. Overall, implementing a form of PA promotion resulted in a significant increase in step-count: median (IQR) 705 (183-1210) when compared with usual standard care: -64 (-597-229), standardised mean difference (SMD) 0.24 (95% CI: 0.12-0.36), p<0.01. To explore the impact of specific interventions, studies were stratified into subgroups: PA promotion+wearable activity monitor-based interventions (n=17) (SMD 0.37, p<0.01); PA promotion+step-count as an outcome measure (n=9) (SMD 0.18, p=0.09); technology-based interventions (n=12) (SMD 0.16, p=0.01). Interventions promoting PA, particularly those that incorporate wearable activity monitors, result in a significant and clinically meaningful improvement in daily step-count in pwCAD.


Asunto(s)
Asma , Enfermedad Pulmonar Obstructiva Crónica , Humanos , Calidad de Vida , Enfermedad Pulmonar Obstructiva Crónica/diagnóstico , Enfermedad Pulmonar Obstructiva Crónica/terapia , Ejercicio Físico
18.
RMD Open ; 9(4)2023 Dec 19.
Artículo en Inglés | MEDLINE | ID: mdl-38114196

RESUMEN

OBJECTIVE: The increasing use of biological therapies has led to the paradoxical finding that monoclonal antibody therapy for one inflammatory disease can sometimes induce another inflammatory disease. Recently, the use of anti-IL-5 (IL, interleukin) antibody therapies for severe asthma has been associated with the onset of rheumatoid arthritis (RA) and other inflammatory rheumatological disease. We undertook this audit to identify the prevalence of this finding across a large clinical cohort of patients receiving anti-IL-5 therapy. METHODS: All patients currently receiving mepolizumab or benralizumab for severe asthma across the Leeds Teaching Hospitals NHS Trust's (LTHT) Respiratory Service were included. Electronic records for each patient were searched to identify clinical and biochemical manifestations of inflammatory rheumatological disease following the initiation of anti-IL-5 therapy. RESULTS: 142 patients, with a mean duration of 3.5 years on therapy, were included (89 mepolizumab, 53 benralizumab). 17 patients developed new arthralgias (nine mepolizumab, eight benralizumab), however only one of these patients (on mepolizumab) had raised acute phase reactants and newly positive anti-CCP antibody (ACPA) and rheumatoid factor and was the only patient to receive a formal diagnosis of RA. CONCLUSION: Although ACPA positive RA has now been reported in a handful of case reports, we noted a very low rate of evolution into RA or inflammatory arthritis, at least in the short-medium term under anti-IL-5 therapy. This challenges the emerging suggestion that anti-IL-5 biologics may be triggering RA.


Asunto(s)
Artritis Reumatoide , Asma , Productos Biológicos , Humanos , Productos Biológicos/efectos adversos , Artritis Reumatoide/diagnóstico , Factor Reumatoide , Anticuerpos Antiproteína Citrulinada , Asma/diagnóstico , Asma/tratamiento farmacológico , Asma/epidemiología
19.
ERJ Open Res ; 8(2)2022 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-35539439

RESUMEN

The aetiology of increased serum bicarbonate and metabolic alkalosis in CF is complex and appears to be driven, at least in part, by renal tubular CFTR dysfunction https://bit.ly/3NFPkUu.

20.
Nat Commun ; 13(1): 4785, 2022 08 15.
Artículo en Inglés | MEDLINE | ID: mdl-35970853

RESUMEN

Ivosidenib, an inhibitor of isocitrate dehydrogenase 1 (IDH1) R132C and R132H variants, is approved for the treatment of acute myeloid leukaemia (AML). Resistance to ivosidenib due to a second site mutation of IDH1 R132C, leading to IDH1 R132C/S280F, has emerged. We describe biochemical, crystallographic, and cellular studies on the IDH1 R132C/S280F and R132H/S280F variants that inform on the mechanism of second-site resistance, which involves both modulation of inhibitor binding at the IDH1 dimer-interface and alteration of kinetic properties, which enable more efficient 2-HG production relative to IDH1 R132C and IDH1 R132H. Importantly, the biochemical and cellular results demonstrate that it should be possible to overcome S280F mediated resistance in AML patients by using alternative inhibitors, including some presently in phase 2 clinical trials.


Asunto(s)
Resistencia a Antineoplásicos , Isocitrato Deshidrogenasa , Leucemia Mieloide Aguda , Resistencia a Antineoplásicos/genética , Glicina/análogos & derivados , Glicina/uso terapéutico , Humanos , Isocitrato Deshidrogenasa/antagonistas & inhibidores , Isocitrato Deshidrogenasa/genética , Leucemia Mieloide Aguda/tratamiento farmacológico , Leucemia Mieloide Aguda/genética , Mutación , Piridinas/uso terapéutico
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