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1.

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.

Burley, Stephen K; Bhikadiya, Charmi; Bi, Chunxiao; Bittrich, Sebastian; Chao, Henry; Chen, Li; Craig, Paul A; Crichlow, Gregg V; Dalenberg, Kenneth; Duarte, Jose M; Dutta, Shuchismita; Fayazi, Maryam; Feng, Zukang; Flatt, Justin W; Ganesan, Sai; Ghosh, Sutapa; Goodsell, David S; Green, Rachel Kramer; Guranovic, Vladimir; Henry, Jeremy; Hudson, Brian P; Khokhriakov, Igor; Lawson, Catherine L; Liang, Yuhe; Lowe, Robert; Peisach, Ezra; Persikova, Irina; Piehl, Dennis W; Rose, Yana; Sali, Andrej; Segura, Joan; Sekharan, Monica; Shao, Chenghua; Vallat, Brinda; Voigt, Maria; Webb, Ben; Westbrook, John D; Whetstone, Shamara; Young, Jasmine Y; Zalevsky, Arthur; Zardecki, Christine.

Nucleic Acids Res ; 51(D1): D488-D508, 2023 01 06.

Artículo en Inglés | MEDLINE | ID: mdl-36420884

2.

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first 6 months of the COVID-19 pandemic.

Lubin, Joseph H; Zardecki, Christine; Dolan, Elliott M; Lu, Changpeng; Shen, Zhuofan; Dutta, Shuchismita; Westbrook, John D; Hudson, Brian P; Goodsell, David S; Williams, Jonathan K; Voigt, Maria; Sarma, Vidur; Xie, Lingjun; Venkatachalam, Thejasvi; Arnold, Steven; Alfaro Alvarado, Luz Helena; Catalfano, Kevin; Khan, Aaliyah; McCarthy, Erika; Staggers, Sophia; Tinsley, Brea; Trudeau, Alan; Singh, Jitendra; Whitmore, Lindsey; Zheng, Helen; Benedek, Matthew; Currier, Jenna; Dresel, Mark; Duvvuru, Ashish; Dyszel, Britney; Fingar, Emily; Hennen, Elizabeth M; Kirsch, Michael; Khan, Ali A; Labrie-Cleary, Charlotte; Laporte, Stephanie; Lenkeit, Evan; Martin, Kailey; Orellana, Marilyn; Ortiz-Alvarez de la Campa, Melanie; Paredes, Isaac; Wheeler, Baleigh; Rupert, Allison; Sam, Andrew; See, Katherine; Soto Zapata, Santiago; Craig, Paul A; Hall, Bonnie L; Jiang, Jennifer; Koeppe, Julia R.

Proteins ; 90(5): 1054-1080, 2022 05.

Artículo en Inglés | MEDLINE | ID: mdl-34580920

3.

BioVR: a platform for virtual reality assisted biological data integration and visualization.

Zhang, Jimmy F; Paciorkowski, Alex R; Craig, Paul A; Cui, Feng.

BMC Bioinformatics ; 20(1): 78, 2019 Feb 15.

Artículo en Inglés | MEDLINE | ID: mdl-30767777

4.

Lessons from my undergraduate research students.

Craig, Paul A.

J Biol Chem ; 293(27): 10447-10452, 2018 07 06.

Artículo en Inglés | MEDLINE | ID: mdl-29743235

5.

Team Training for Dynamic Cross-Functional Teams in Aviation: Behavioral, Cognitive, and Performance Outcomes.

Littlepage, Glenn E; Hein, Michael B; Moffett, Richard G; Craig, Paul A; Georgiou, Andrea M.

Hum Factors ; 58(8): 1275-1288, 2016 12.

Artículo en Inglés | MEDLINE | ID: mdl-27549389

6.

Automated protein motif generation in the structure-based protein function prediction tool ProMOL.

Osipovitch, Mikhail; Lambrecht, Mitchell; Baker, Cameron; Madha, Shariq; Mills, Jeffrey L; Craig, Paul A; Bernstein, Herbert J.

J Struct Funct Genomics ; 16(3-4): 101-11, 2015 Dec.

Artículo en Inglés | MEDLINE | ID: mdl-26573864

7.

Annotation of proteins of unknown function: initial enzyme results.

McKay, Talia; Hart, Kaitlin; Horn, Alison; Kessler, Haeja; Dodge, Greg; Bardhi, Keti; Bardhi, Kostandina; Mills, Jeffrey L; Bernstein, Herbert J; Craig, Paul A.

J Struct Funct Genomics ; 16(1): 43-54, 2015 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-25630330

8.

Estimation of protein function using template-based alignment of enzyme active sites.

Hanson, Brett; Westin, Charles; Rosa, Mario; Grier, Alexander; Osipovitch, Mikhail; MacDonald, Madolyn L; Dodge, Greg; Boli, Paule M; Corwin, Cyprian W; Kessler, Haeja; McKay, Talia; Bernstein, Herbert J; Craig, Paul A.

BMC Bioinformatics ; 15: 87, 2014 Mar 27.

Artículo en Inglés | MEDLINE | ID: mdl-24669788

9.

Python scripting for biochemistry and molecular biology in Jupyter Notebooks.

Craig, Paul A; Nash, Jessica A; Crawford, T Daniel.

Biochem Mol Biol Educ ; 50(5): 479-482, 2022 09.

Artículo en Inglés | MEDLINE | ID: mdl-36093574

10.

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D.

Burley, Stephen K; Bhikadiya, Charmi; Bi, Chunxiao; Bittrich, Sebastian; Chao, Henry; Chen, Li; Craig, Paul A; Crichlow, Gregg V; Dalenberg, Kenneth; Duarte, Jose M; Dutta, Shuchismita; Fayazi, Maryam; Feng, Zukang; Flatt, Justin W; Ganesan, Sai J; Ghosh, Sutapa; Goodsell, David S; Green, Rachel Kramer; Guranovic, Vladimir; Henry, Jeremy; Hudson, Brian P; Khokhriakov, Igor; Lawson, Catherine L; Liang, Yuhe; Lowe, Robert; Peisach, Ezra; Persikova, Irina; Piehl, Dennis W; Rose, Yana; Sali, Andrej; Segura, Joan; Sekharan, Monica; Shao, Chenghua; Vallat, Brinda; Voigt, Maria; Webb, Benjamin; Westbrook, John D; Whetstone, Shamara; Young, Jasmine Y; Zalevsky, Arthur; Zardecki, Christine.

Protein Sci ; 31(12): e4482, 2022 12.

Artículo en Inglés | MEDLINE | ID: mdl-36281733

11.

Something old, something new: Teaching the BMB lab.

Craig, Paul A.

Biochem Mol Biol Educ ; 48(6): 640-642, 2020 11.

Artículo en Inglés | MEDLINE | ID: mdl-32400064

12.

Publishing your educational research.

Craig, Paul A.

Biochem Mol Biol Educ ; 48(6): 643-645, 2020 11.

Artículo en Inglés | MEDLINE | ID: mdl-32428992

13.

Developing and applying computational resources for biochemistry education.

Craig, Paul A.

Biochem Mol Biol Educ ; 48(6): 579-584, 2020 11.

Artículo en Inglés | MEDLINE | ID: mdl-32203640

14.

Laboratory classes in biochemistry and molecular biology: A parallel session at the IUBMB/PSBMB 2019 "Harnessing Interdisciplinary Education in Biochemistry and Molecular Biology" conference.

Gibbons, Jessica A; Garcia, Reynaldo L; Craig, Paul A; Yu, Gracia Fe B; Macaulay, Janet O.

Biochem Mol Biol Educ ; 48(6): 615-618, 2020 11.

Artículo en Inglés | MEDLINE | ID: mdl-33059390

15.

Publishing in education: A parallel session at the IUBMB/PSBMB 2019 "Harnessing Interdisciplinary Education in Biochemistry and Molecular Biology" conference.

Bascos, Neil Andrew D; Craig, Paul A; Lapeña, Jose Florencio F; Ortiz, Phillip; Yu, Gracia Fe B; Macaulay, Janet O.

Biochem Mol Biol Educ ; 48(6): 635-639, 2020 11.

Artículo en Inglés | MEDLINE | ID: mdl-33155380

16.

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic.

Lubin, Joseph H; Zardecki, Christine; Dolan, Elliott M; Lu, Changpeng; Shen, Zhuofan; Dutta, Shuchismita; Westbrook, John D; Hudson, Brian P; Goodsell, David S; Williams, Jonathan K; Voigt, Maria; Sarma, Vidur; Xie, Lingjun; Venkatachalam, Thejasvi; Arnold, Steven; Alvarado, Luz Helena Alfaro; Catalfano, Kevin; Khan, Aaliyah; McCarthy, Erika; Staggers, Sophia; Tinsley, Brea; Trudeau, Alan; Singh, Jitendra; Whitmore, Lindsey; Zheng, Helen; Benedek, Matthew; Currier, Jenna; Dresel, Mark; Duvvuru, Ashish; Dyszel, Britney; Fingar, Emily; Hennen, Elizabeth M; Kirsch, Michael; Khan, Ali A; Labrie-Cleary, Charlotte; Laporte, Stephanie; Lenkeit, Evan; Martin, Kailey; Orellana, Marilyn; de la Campa, Melanie Ortiz-Alvarez; Paredes, Isaac; Wheeler, Baleigh; Rupert, Allison; Sam, Andrew; See, Katherine; Zapata, Santiago Soto; Craig, Paul A; Hall, Bonnie L; Jiang, Jennifer; Koeppe, Julia R.

bioRxiv ; 2020 Dec 07.

Artículo en Inglés | MEDLINE | ID: mdl-33299989

17.

A survey on faculty perspectives on the transition to a biochemistry course-based undergraduate research experience laboratory.

Craig, Paul A.

Biochem Mol Biol Educ ; 45(5): 426-436, 2017 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-28419715

18.

An expanded framework for biomolecular visualization in the classroom: Learning goals and competencies.

Dries, Daniel R; Dean, Diane M; Listenberger, Laura L; Novak, Walter R P; Franzen, Margaret A; Craig, Paul A.

Biochem Mol Biol Educ ; 45(1): 69-75, 2017 Jan 02.

Artículo en Inglés | MEDLINE | ID: mdl-27486685

19.

EZ-Viz, a tool for simplifying molecular viewing in PyMOL.

Grell, Laura; Parkin, Christopher; Slatest, Len; Craig, Paul A.

Biochem Mol Biol Educ ; 34(6): 402-7, 2006 Nov.

Artículo en Inglés | MEDLINE | ID: mdl-21638731

20.

Biochemistry CURE lab survey.

Craig, Paul A.

Biochem Mol Biol Educ ; 46(4): 305, 2018 07.

Artículo en Inglés | MEDLINE | ID: mdl-29732711

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RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first 6 months of the COVID-19 pandemic.

BioVR: a platform for virtual reality assisted biological data integration and visualization.

Lessons from my undergraduate research students.

Team Training for Dynamic Cross-Functional Teams in Aviation: Behavioral, Cognitive, and Performance Outcomes.

Automated protein motif generation in the structure-based protein function prediction tool ProMOL.

Annotation of proteins of unknown function: initial enzyme results.

Estimation of protein function using template-based alignment of enzyme active sites.

Python scripting for biochemistry and molecular biology in Jupyter Notebooks.

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D.

Something old, something new: Teaching the BMB lab.

Publishing your educational research.

Developing and applying computational resources for biochemistry education.

Laboratory classes in biochemistry and molecular biology: A parallel session at the IUBMB/PSBMB 2019 "Harnessing Interdisciplinary Education in Biochemistry and Molecular Biology" conference.

Publishing in education: A parallel session at the IUBMB/PSBMB 2019 "Harnessing Interdisciplinary Education in Biochemistry and Molecular Biology" conference.

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic.

A survey on faculty perspectives on the transition to a biochemistry course-based undergraduate research experience laboratory.

An expanded framework for biomolecular visualization in the classroom: Learning goals and competencies.

EZ-Viz, a tool for simplifying molecular viewing in PyMOL.

Biochemistry CURE lab survey.