In Situ Temperature-Compensated DNA Hybridization Detection Using a Dual-Channel Optical Fiber Sensor.

A multifunction, high-sensitivity, and temperature-compensated optical fiber DNA hybridization sensor combining surface plasmon resonance (SPR) and Mach-Zehnder interference (MZI) has been designed and implemented. We demonstrate, for the first time to our knowledge, the dual-parameter measurement of temperature and refractive index (RI) by simultaneously using SPR and MZI in a simple single-mode fiber (SMF)-no-core fiber (NCF)-SMF structure. The experimental results show RI sensitivities of 930 and 1899 nm/RIU and temperature sensitivities of 0.4 and -1.4 nm/°C for the MZI and SPR, respectively. We demonstrate a sensitivity matrix used to simultaneously detect both parameters, solving the problem of temperature interference of RI variation-based biosensors. In addition, the sensor can also distinguish biological binding events by detecting the localized RI changes at the fiber's surface. We realize label-free sensing of DNA hybridization detection by immobilizing probe DNA (pDNA) onto the fiber as the probe to capture complementary DNA (cDNA). The experimental results show that the sensor can qualitatively detect cDNA after temperature compensation, and the limit of detection (LOD) of the sensor reaches 80 nM. The proposed sensor has advantages of high sensitivity, real time, low cost, temperature compensation, and low detection limit and is suitable for in situ monitoring, high-precision sensing of DNA molecules, and other related fields, such as gene diagnosis, kinship judgment, environmental monitoring, and so on.

Whispering gallery mode excitation using exposed-core fiber.

Whispering gallery modes (WGMs) in micro-resonators are of interest due to their high Q-factors. Ultra-thin fiber tapers are widely deployed to couple light into micro-resonators but achieving stable and practical coupling for out-of-lab use remains challenging. Here, a new WGM coupling scheme using an exposed-core silica fiber (ECF) is proposed, which overcomes the challenge of using fragile fiber tapers. Microspheres are deposited onto the exposed channel for excitation via the evanescent field of the fiber's guided modes. The outer jacket of the ECF partially encapsulates the microspheres, protecting them from external physical disturbance. By varying the mode launching conditions in this few-mode ECF, in combination with a Fano resonance effect, we demonstrate a high degree of tunability in the reflection spectrum. Furthermore, we show multi-particle WGM excitation, which could be controlled to occur either simultaneously or separately through controlling the ECF mode launching conditions. This work can bring value towards applications such as optical switches and modulators, multiplexed/distributed biosensing, and multi-point lasing, integrated in a single optical fiber device that avoids fiber post-processing.

Preferential coupling of diamond NV centres in step-index fibres.

Diamonds containing the negatively charged nitrogen-vacancy centre are a promising system for room-temperature magnetometry. The combination of nano- and micro-diamond particles with optical fibres provides an option for deploying nitrogen-vacancy magnetometers in harsh and challenging environments. Here we numerically explore the coupling efficiency from nitrogen-vacancy centres within a diamond doped at the core/clad interface across a range of commercially available fibre types so as to inform the design process for a diamond in fibre magnetometers. We determine coupling efficiencies from nitrogen-vacancy centres to the guided modes of a step-index fibre and predict the optically detected magnetic resonance (ODMR) generated by a ensemble of four nitrogen-vacancy centres in this hybrid fibre system. Our results show that the coupling efficiency is enhanced with a high refractive index difference between the fibre core and cladding and depends on the radial position of the nitrogen-vacancy centres in the fibre core. Our ODMR simulations show that due to the preferential coupling of the nitrogen-vacancy emission to the fibre guided modes, certain magnetometry features such as ODMR contrast can be enhanced and lead to improved sensitivity in such diamond-fibre systems, relative to conventional diamond only ensemble geometries.

Cytoplasmic delivery of quantum dots via microelectrophoresis technique.

Nanoparticles with specific properties and functions have been developed for various biomedical research applications, such as in vivo and in vitro sensors, imaging agents and delivery vehicles of therapeutics. The development of an effective delivery method of nanoparticles into the intracellular environment is challenging and success in this endeavor would be beneficial to many biological studies. Here, the well-established microelectrophoresis technique was applied for the first time to deliver nanoparticles into living cells. An optimal protocol was explored to prepare semiconductive quantum dots suspensions having high monodispersity with average hydrodynamic diameter of 13.2-35.0 nm. Micropipettes were fabricated to have inner tip diameters of approximately 200 nm that are larger than quantum dots for ejection but less than 500 nm to minimize damage to the cell membrane. We demonstrated the successful delivery of quantum dots via small electrical currents (-0.2 nA) through micropipettes into the cytoplasm of living human embryonic kidney cells (roughly 20-30 µm in length) using microelectrophoresis technique. This method is promising as a simple and general strategy for delivering a variety of nanoparticles into the cellular environment.

Single-peak fiber Bragg gratings in suspended-core optical fibers.

Femtosecond laser inscribed fiber Bragg gratings in pure-silica suspended-core optical fibers have previously been demonstrated as a promising platform for high temperature sensing. However, the density of gratings that could be written on a single fiber was limited by undesired reflections associated with higher order modes in these high numerical aperture fibers. This resulted in a complex, broadband reflection spectrum with limited multiplexing capability. In this work we utilize modifications to the fine structure of the suspended core optical fibers to fine tune the relative confinement loss of the optical fiber modes, thus reducing the contribution from such higher order modes. The effects of these changes on mode propagation are modeled, giving a range of fibers with different confinement loss properties which can be tailored to the specific length scale of a desired application. We achieve single-peak reflections from individual fiber Bragg gratings, significantly improving performance for multipoint sensing and demonstrate this technique by writing 20 gratings onto a single fiber.

Compact plasmonic fiber tip for sensitive and fast humidity and human breath monitoring.

We demonstrate a plasmonic fiber tip for relative humidity (RH) detection by integrating a gold nanomembrane onto the end-face of a multimode optical fiber via a flexible and high-efficiency transfer method. Fast water condensation/evaporation is responsible for the high performance of the fiber tip in response to RH. A high sensitivity of 279 pm/%RH is obtained in the range of $ 11\% \sim 92\% {\rm RH} $11%∼92%RH. Taking advantage of the fast dynamics (response and recovery times of 156 ms and 277 ms), the plasmonic fiber tip offers an excellent detection capability to human breaths at varied frequencies and depths. The compact, easy-fabrication, and fast-dynamics plasmonic platform has versatile potential for practical applications, including environmental and healthcare monitoring, as well as biochemical sensing.

Multimode exposed core fiber specklegram sensor.

The inception of photonic crystal fibers (PCFs) allowed for unprecedented tailoring of waveguide properties for specialty sensing probes. Exposed core microstructured fibers (ECFs) represent a natural evolution of the PCF design for practical liquid and gas sensing. Until now, to the best of our knowledge, only single-mode or few-modes ECFs have been explored. In this Letter, we demonstrate a highly multimode ECF with a lateral access that extends throughout the whole length of the fiber. The ECF is operated as a fiber specklegram sensor for assessing properties of fluids and interrogated using a simple and low-cost setup. The probe exhibits a refractive index resolution and sensitivity of at least 4.6×10-4 refractive index units (RIUs) and -10.97RIU-1, respectively. A maximum temperature resolution up to 0.017°C with a -0.20∘C-1 temperature sensitivity over the 23°C-28°C range and a liquid level sensing resolution up to 0.12 mm with -0.015mm-1 sensitivity over the 0.0-50.0 mm bathed the length range in water.

All-fiber all-optical quantitative polymerase chain reaction (qPCR).

Quantitative polymerase chain reaction (qPCR), the real-time amplification and measurement of a targeted DNA molecule, has revolutionized the biological sciences and is routinely applied in areas such as medical diagnostics, forensics, and agriculture. Despite widescale use of qPCR technology in the lab, the availability of low-cost and high-speed portable systems remains one of the barriers to routine in-field implementation. Here we propose and demonstrate a potential solution using a photonics-based qPCR system. By using an all-optical approach, we achieve ultra-fast temperature response with real-time temperature feedback using nanoliter scale reaction volumes. The system uses a microcavity to act as a nanoliter scale reaction vessel with a laser-driven and optically monitored temperature cycling system for ultrafast thermal cycling and incorporates an all-fiber fluorescence excitation/detection system to achieve real-time, high sensitivity fluorescence monitoring of the qPCR process. Further, we demonstrate the potential of the system to operate as a label-free qPCR system through direct optical measurement of the sample refractive index. Due to advantages in portability and fabrication simplicity, we anticipate that this platform technology will offer a new strategy for fundamental techniques in biochemistry applications, such as point-of-care and remote diagnostics.

A Fibre-Optic Platform for Sensing Nitrate Using Conducting Polymers.

Monitoring nitrate ions is essential in agriculture, food industry, health sector and aquatic ecosystem. We show that a conducting polymer, poly(3,4-ethylenedioxythiophene) (PEDOT), can be used for nitrate sensing through a process in which nitrate ion uptake leads to oxidation of PEDOT and change of its optical properties. In this study, a new platform is developed in which a single-mode fibre coated at the tip with PEDOT is used for nitrate sensing. A crucial step towards this goal is introduction of carbonate exposure to chemically reduced PEDOT to a baseline value. The proposed platform exhibits the change in optical behaviour of the PEDOT layer at the tip of the fibre as it undergoes chemical oxidation and reduction (redox). The change in optical properties due to redox switching varies with the intensity of light back reflected by the fibre coated with PEDOT. The proposed platform during oxidation demonstrates linear response for the uptake of nitrate ions in concentrations ranging between 0.2 and 40 parts per million (ppm), with a regression coefficient R2=0.97 and a detection limit of 6.7 ppm. The procedure for redox switching is repeatable as the back reflection light intensity reaches ±1.5% of the initial value after reduction.

Field Deployable Method for Gold Detection Using Gold Pre-Concentration on Functionalized Surfaces.

Keywords: surface chemistry, plasma polymerization, salinization, gold sensing.

Modal interferometric refractive index sensing in microstructured exposed core fibres.

Optical fibre-based sensors measuring refractive index shift in bodily fluids and tissues are versatile and accurate probes of physiological processes. Here, we suggest a refractive index sensor based on a microstructured exposed-core fibre (ECF). By considering a high refractive index coating of the exposed core, our modelling demonstrates the splitting of the guided mode into a surface sensing mode and a mode that is isolated from the surface. With the isolated mode acting as a reference arm, this two-mode one-fibre solution provides for robust interferometric sensing with a sensitivity of up to 60, 000 rad/RIU-cm, which is suitable for sensing subtle physiological processes within hard-to-reach places inside living organisms, such as the spinal cord, ovarian tract and blood vessels.

Quantum noise limited nanoparticle detection with exposed-core fiber.

Label-free biosensors are important tools for clinical diagnostics and for studying biology at the single molecule level. The development of optical label-free sensors has allowed extreme sensitivity but can expose the biological sample to photodamage. Moreover, the fragility and complexity of these sensors can be prohibitive to applications. To overcome these problems, we develop a quantum noise limited exposed-core fiber sensor providing robust platform for label-free biosensing with a natural path toward microfluidic integration. We demonstrate the detection of single nanoparticles down to 25 nm in radius with optical intensities beneath known biophysical damage thresholds.

Tunable multi-wavelength third-harmonic generation using exposed-core microstructured optical fiber.

We demonstrate that exposed-core microstructured optical fibers offer multiple degrees of freedom for tailoring third-harmonic generation through the core diameter, input polarization, and nanofilm deposition. Varying these parameters allows control of the phase-matching position between an infrared pump wavelength and the generated visible wavelengths. In this Letter, we show how increasing the core diameter over previous experiments (2.57 µm compared to 1.85 µm) allows the generation of multiple wavelengths, which can be further controlled by rotating the input pump polarization and the deposition of dielectric nanofilms. This can lead to highly tailorable light sources for applications such as spectroscopy or nonlinear microscopy.

Reusable polymer optical fiber strain sensor with memory capability based on ABS crazing.

A reusable memory capable polymer optical fiber (POF) strain sensor is reported. The fiber consists of an acrylonitrile butadiene styrene (ABS) core and polymethylmethacrylate cladding. The memory capability is derived from stress whitening due to crazing of the ABS core, which can be reversed by heating the fiber close to the ABS glass transition temperature. The probe was characterized under transverse compressive load, macrobending, and tensile loading. Testing shows that the optical properties of the fiber can be reversed to near pristine ABS conditions after thermal recovery and that the POF can be used on the accurate assessment of indentation, flexural and tensile loading, static or cyclical, even after removal of the load. The reusability of the proposed sensor combined with a deeper understanding of the memory mechanisms in POFs are of great interest for the development of new large-strain sensors for modern applications.

Surface Functionalization of Exposed Core Glass Optical Fiber for Metal Ion Sensing.

One of the biggest challenges associated with exposed core glass optical fiber-based sensing is the availability of techniques that can be used to generate reproducible, homogeneous and stable surface coating. We report a one step, solvent free method for surface functionalization of exposed core glass optical fiber that allows achieving binding of fluorophore of choice for metal ion sensing. The plasma polymerization-based method yielded a homogeneous, reproducible and stable coating, enabling high sensitivity aluminium ion sensing. The sensing platform reported in this manuscript is versatile and can be used to bind different sensing molecules opening new avenues for optical fiber-based sensing.

Soft-glass imaging microstructured optical fibers.

We demonstrate the fabrication of multi-core (imaging) microstructured optical fiber via soft-glass preform extrusion through a 3D printed titanium die. The combination of extrusion through 3D printed dies and structured element (capillary) stacking allows for unprecedented control of the optical fiber geometry. We have exploited this to demonstrate a 100 pixel rectangular array imaging microstructured fiber. Due to the high refractive index of the glass used (n = 1.62), such a fiber can theoretically have a pixel pitch as small as 1.8 µm. This opens opportunities for ultra-small, high-resolution imaging fibers fabricated from diverse glass types.

A six-strut suspended core fiber for cylindrical vector mode generation and propagation.

We report fabrication and simulation of an F2 glass six-strut suspended core fiber (SCF) with small effective core diameter of 2.5 µm for cylindrical vector (CV) modes generation and propagation. Simulation results show that the fiber has a large effective refractive index difference in the order of 10-4-10-3 between the first higher-order CV modes, including TE01, HE21even and odd and TM01 modes. TE01 and TM01 were experimentally generated and were evaluated as having high purity of 82 percent and 85 percent, respectively. The results demonstrate that the SCF is a competitive waveguide candidate for selectable CV mode generation and propagation.

Towards rewritable multilevel optical data storage in single nanocrystals.

Novel approaches for digital data storage are imperative, as storage capacities are drastically being outpaced by the exponential growth in data generation. Optical data storage represents the most promising alternative to traditional magnetic and solid-state data storage. In this paper, a novel and energy efficient approach to optical data storage using rare-earth ion doped inorganic insulators is demonstrated. In particular, the nanocrystalline alkaline earth halide BaFCl:Sm is shown to provide great potential for multilevel optical data storage. Proof-of-concept demonstrations reveal for the first time that these phosphors could be used for rewritable, multilevel optical data storage on the physical dimensions of a single nanocrystal. Multilevel information storage is based on the very efficient and reversible conversion of Sm3+ to Sm2+ ions upon exposure to UV-C light. The stored information is then read-out using confocal optics by employing the photoluminescence of the Sm2+ ions in the nanocrystals, with the signal strength depending on the UV-C fluence used during the write step. The latter serves as the mechanism for multilevel data storage in the individual nanocrystals, as demonstrated in this paper. This data storage platform has the potential to be extended to 2D and 3D memory for storage densities that could potentially approach petabyte/cm3 levels.

Dual-polarized highly sensitive plasmonic sensor in the visible to near-IR spectrum.

We propose and numerically characterize the optical characteristics of a novel photonic crystal fiber (PCF) based surface plasmon resonance (SPR) sensor in the visible to near infrared (500-2000 nm) region for refractive index (RI) sensing. The finite element method (FEM) is used to design and study the influence of different geometric parameters on the sensing performance of the sensor. The chemically stable plasmonic material gold (Au) is used to produce excitation between the core and plasmonic mode. On a pure silica (SiO2) substrate, a rectangular structured core is used to facilitate the coupling strength between the core and the surface plasmon polariton (SPP) mode and thus improves the sensing performance. By tuning the geometric parameters, simulation results show a maximum wavelength sensitivity of 58000 nm/RIU (Refractive Index Unit) for the x polarization and 62000 nm/RIU for the y polarization for analyte refractive indices ranging from 1.33 to 1.43. Moreover, we characterize the amplitude sensitivity of the sensor that shows a maximum sensitivity of 1415 RIU-1 and 1293 RIU-1 for the x and y polarizations, respectively. To our knowledge, this is the highest sensitivity for an SPR in published literature, and facilitates future development of sensors for accurate and precise analyte measurement. The sensor also attains a maximum figure of merit (FOM) of 1140 and fine RI resolution of 1.6 × 10-6. Owing to strong coupling strength, high sensitivity, high FOM and improved sensing resolution, the proposed sensor is suited for real-time, inexpensive and accurate detection of biomedical and biological analytes, biomolecules, and organic chemicals.

Light-controllable fiber interferometer utilizing photoexcitation dynamics in colloidal quantum dot.

The development of highly efficient light-controlled functional fiber elements has become indispensable to optical fiber communication systems. Traditional nonlinearity-based optical fiber devices suffer from the demerits of complex/expensive components, high peak power requirements, and poor efficiency. In this study, we utilize colloidal quantum dots (CQDs) to develop a light-controlled optical fiber interferometer (FI) for the all-optical control of the transmission spectrum. A specially designed exposed-core microstructure fiber (ECMF) is utilized to form the functional structure. Two types of PbS CQDs with absorption wavelengths around 1180 nm and 1580 nm, respectively, are deposited on the ECMF to enable the functional FI. The wavelength and power of control light are key factors for tailoring the FI transmission spectrum. A satisfactory recovery property and linear relationship between the spectrum shift and the power of control light at certain wavelength are achieved. The highest wavelength shift sensitivity of our light-controlled FI is 4.6 pm/mW, corresponding to an effective refractive index (RI) change of 5 × 10-6 /mW. We established a theoretical model to reveal that the RI of the CQD layer is governed by photoexcitation dynamics in CQD with the light absorption at certain wavelength. The concentration of charge carriers in the CQD layer can be relatively high under light illumination owing to their small size-related quantum confinement, which implies that low light power (mW-level in this work) can change the refractive index of the CQDs. Meanwhile, the absorption wavelength of quantum dots can be easily tuned via CQD size control to match specific operating wavelength windows. We further apply the CQD-based FI as a light-controllable fiber filter (LCFF) in a 50-km standard single-mode fiber-based communication system with 12.5-Gbps on-off keying direct modulation. Chirp management and dispersion compensation are successfully achieved by using the developed LCFF to obtain error-free transmission. CQDs possess excellent solution processability, and they can be deposited uniformly and conformally on various substrates such as fibers, silicon chips, and other complex structure surfaces, offering a powerful new degree of freedom to develop light control devices for optical communication.