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1.
Sci Total Environ ; 842: 156848, 2022 Oct 10.
Artículo en Inglés | MEDLINE | ID: mdl-35750190

RESUMEN

The quality and health of many of our vital freshwater systems are poor. To tackle this with ever increasing pressures from anthropogenic and climatic changes, we must improve water quality monitoring and devise and implement more appropriate water quality parameters. Recent research has highlighted the potential for Peak T fluorescence (tryptophan-like fluorescence, TLF) to monitor microbial activity in aquatic systems. The VLux TPro (Chelsea Technologies Ltd., UK), an in situ real-time fluorimeter, was deployed in different urban freshwater bodies within Kolkata (West Bengal, India) during March 2019. This study is the first to apply this technology in surface waters within a densely populated urban area. Spot-sampling was also undertaken at 13 sampling locations enabling physicochemical analysis, bacterial enumeration and determination of nutrient (nitrate and phosphate) concentrations. This case study has demonstrated the ability of an in situ fluorimeter, VLux TPro, to successfully identify both biological contamination events and potential elevated microbial activity, related to nutrient loading, in complex surface freshwaters, without the need for expensive and time-consuming laboratory analysis.


Asunto(s)
Monitoreo del Ambiente , Calidad del Agua , Fluorescencia , Agua Dulce , Triptófano/análisis
2.
Science ; 151(3706): 75, 1966 Jan 07.
Artículo en Inglés | MEDLINE | ID: mdl-17842093

RESUMEN

A new tungsten boride has been prepared and has been assigned the formula WB(2). The assignment is based on comparison of the x-ray diffraction data of this boride with those of diborides of the AlB(2) type structure. Values of a(0) = 3.02 and c(0) = 3.05 were calculated for a hexagonal unit cell.

3.
Water Res ; 125: 350-359, 2017 11 15.
Artículo en Inglés | MEDLINE | ID: mdl-28881211

RESUMEN

Aquatic dissolved organic matter (DOM) plays an essential role in biogeochemical cycling and transport of organic matter throughout the hydrological continuum. To characterise microbially-derived organic matter (OM) from common environmental microorganisms (Escherichia coli, Bacillus subtilis and Pseudomonas aeruginosa), excitation-emission matrix (EEM) fluorescence spectroscopy was employed. This work shows that bacterial organisms can produce fluorescent organic matter (FOM) in situ and, furthermore, that the production of FOM differs at a bacterial species level. This production can be attributed to structural biological compounds, specific functional proteins (e.g. pyoverdine production by P. aeruginosa), and/or metabolic by-products. Bacterial growth curve data demonstrates that the production of FOM is fundamentally related to microbial metabolism. For example, the majority of Peak T fluorescence (> 75%) is shown to be intracellular in origin, as a result of the building of proteins for growth and metabolism. This underpins the use of Peak T as a measure of microbial activity, as opposed to bacterial enumeration as has been previously suggested. This study shows that different bacterial species produce a range of FOM that has historically been attributed to high molecular weight allochthonous material or the degradation of terrestrial FOM. We provide definitive evidence that, in fact, it can be produced by microbes within a model system (autochthonous), providing new insights into the possible origin of allochthonous and autochthonous organic material present in aquatic systems.


Asunto(s)
Bacterias/metabolismo , Bacillus subtilis/metabolismo , Escherichia coli/metabolismo , Fluorescencia , Sustancias Húmicas , Pseudomonas aeruginosa/metabolismo , Especificidad de la Especie , Espectrometría de Fluorescencia
4.
Biochim Biophys Acta ; 786(1-2): 49-56, 1984 Apr 27.
Artículo en Inglés | MEDLINE | ID: mdl-6712956

RESUMEN

The redox potential-pH characteristics of the enzyme L-amino-acid oxidase (L-amino-acid: oxygen oxidoreductase (deaminating), EC 1.4.3.2) have been measured in the pH range 6.2 to 8.3 at 4 degrees C. All potentials are reported versus the standard hydrogen electrode. Consistent with the protonation states proposed for the anionic red semiquinone and anionic dihydroquinone forms of the flavin coenzyme, the first electron potential is independent of pH (-0.056 +/- 0.006 V), while the second electron transfer potential is pH-dependent, exhibiting a 0.060 V/pH unit slope. At all pH values investigated, the percentage of semiquinone species observed matches closely that calculated from measured potential separations. The semiquinone species is thermodynamically stable, as indicated by formation of semiquinone, similarity of redox potentials in oxidative and reductive directions, and by the slope of Nernst plots.


Asunto(s)
Aminoácido Oxidorreductasas , Venenos de Crotálidos/análisis , Flavoproteínas , Animales , Fenómenos Químicos , Química Física , Concentración de Iones de Hidrógeno , L-Aminoácido Oxidasa , Oxidación-Reducción , Potenciometría
5.
J Inorg Biochem ; 78(1): 7-14, 2000 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-10714700

RESUMEN

Positional isomers of mono-unsaturated 18:1-ACP have been used as substrates for stearoyl-acyl carrier protein delta9 desaturase to test whether a C-H bond abstraction from either the C-9 or C-10 position could lead to rearranged products diagnostic for the production of an allylic radical intermediate. The reconstituted enzyme complex was able to desaturate trans-delta11-18:1-ACP and trans-delta7-18:1-ACP, but not trans-delta9-18:1-ACP, or any of the corresponding cis-isomers. Enzymatic desaturation of trans-delta11-18:1-ACP gave a single product, cis-delta9,trans-delta11-18:2-ACP, as characterized by gas chromatography-electron ionization mass spectrometry of the molecular ions, the fragmentation products of pyrrolidide and 4,4-dimethyloxazoline derivatives, and by comparison of chromatographic retention times with authentic standards. Reaction of trans-delta7-18:1-ACP gave two enzymic products, trans-delta7,cis-delta9-18:2 (approximately 80%) and trans-delta7,cis-delta11-18:2 (approximately 20%). The major product was likely formed in a reaction identical to that of 18:0-ACP desaturation, while the minor product was likely formed by alternative placement of the C-10 and C-11 positions of the substrate analog in a cis configuration relative to the diiron oxidant. Since none of the products observed are indicative of rearrangements originating with an allylic radical, a discussion of the origins and possible implications of these results is presented.


Asunto(s)
Proteína Transportadora de Acilo/metabolismo , Oxigenasas de Función Mixta/metabolismo , Ácidos Esteáricos/metabolismo , Proteína Transportadora de Acilo/análogos & derivados , Ácidos Grasos Monoinsaturados/química , Ácidos Grasos Monoinsaturados/metabolismo , Cromatografía de Gases y Espectrometría de Masas , Isomerismo , Oxigenasas de Función Mixta/química , Sondas Moleculares , Oxidación-Reducción , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Ácidos Esteáricos/química
6.
Appl Biochem Biotechnol ; 90(3): 187-97, 2001 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-11318032

RESUMEN

Toluene 4-monooxygenase is a four-protein component diiron enzyme complex. The enzyme catalyzes the hydroxylation of toluene to give p-cresol with approximately 96% regioselectivity. The performance of the enzyme in two-phase reaction systems consisting of toluene, hexane, or perfluorohexane and an aqueous buffer was tested. In each of the cosolvent systems, containing up to 93% (v/v) of solvent, the enzyme was active and exhibited regioselectivity indistinguishable from the aqueous reaction. Using the perfluorohexane/buffer system, a number of polycyclic aromatic hydrocarbons were oxidized that were not readily oxidized in aqueous buffer. An instability of the hydroxylase component and a substantial uncoupling of NADH utilization and product formation were observed in reactions that were continued for longer than approximately 3 min. More stable enzyme complexes will be needed for broad applicability of this hydroxylating system in nonaqueous media.


Asunto(s)
Química/métodos , Oxigenasas/metabolismo , Tampones (Química) , Catálisis , Fluorocarburos/química , Hexanos/química , Hidroxilación , Modelos Químicos , NAD/metabolismo , Solubilidad , Tolueno/química , Agua/química
8.
Biochem Biophys Res Commun ; 154(1): 165-70, 1988 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-2840063

RESUMEN

The purification of the hydroxylase component of a 3 component methane monooxygenase from the type II methanotroph Methylosinus trichosporium OB3b is reported. The enzyme (240 kDa) has an (alpha beta gamma)2 subunit structure as observed for hydroxylases isolated from other Type I and Type II methanotrophs, but it exhibits a 5 to 10 fold higher specific activity and is isolated in 2 to 10 fold higher yield. EPR and Mössbauer spectra of the hydroxylase show that it contains a coupled iron center containing an even number of iron atoms. The spectra are similar to those of proteins known to contain oxo-bridged binuclear iron centers. The presence of such a center is unprecedented in a monooxygenase and suggests that a novel mechanism is utilized.


Asunto(s)
Euryarchaeota/enzimología , Oxigenasas/aislamiento & purificación , Cromatografía en Gel , Cromatografía por Intercambio Iónico , Espectroscopía de Resonancia por Spin del Electrón , Hierro/análisis , Cinética , Sustancias Macromoleculares , Peso Molecular , Oxigenasas/metabolismo , Unión Proteica , Análisis Espectral
9.
Biochemistry ; 38(39): 12833-40, 1999 Sep 28.
Artículo en Inglés | MEDLINE | ID: mdl-10504253

RESUMEN

Stearoyl acyl carrier protein Delta(9) desaturase (Delta9D) uses a diiron center to catalyze the NADPH- and O(2)-dependent desaturation of stearoyl acyl carrier protein (ACP) to form oleoyl-ACP. The reaction of recombinant Ricinus communis Delta9D with natural and nonnatural chain length acyl-ACPs was used to examine the coupling of the reconstituted enzyme complex, the specificity for position of double-bond insertion, the kinetic parameters for the desaturation reaction, and the selectivity for acyl chain length. The coupling of NADPH and O(2) consumption and olefin production was found to be maximal for 18:0-ACP, and the loss of coupling observed for the more slowly desaturated acyl-ACPs was attributed to autoxidation of the electron-transfer chain. Analysis of steady-state kinetic parameters for desaturation of acyl-ACPs having various acyl chain lengths revealed that the K(M) values were similar ( approximately 2.5-fold difference) for 15:0-18:0-ACP, while the k(cat) values increased by approximately 26-fold for the same range of acyl chain lengths. A linear increase in log (k(cat)/K(M)) was observed upon lengthening of the acyl chain from 15:0- to 18:0-ACP, while no further increase was observed for 19:0-ACP. The similarity of the k(cat)/K(M) values for 18:0- and 19:0-ACPs and the retained preference for double-bond insertion at the Delta(9) position with 19:0-ACP (>98% desaturation at the Delta(9) position) suggest that the active-site channel past the diiron center can accommodate at least one more methylene group than is found in the natural substrate. The DeltaDeltaG(binding) estimated from the change in k(cat)/K(M) for increasing substrate acyl-chain length was -3 kJ/mol per methylene group, similar to the value of -3.5 kJ/mol estimated for the hydrophobic partition of long-chain fatty acids (C-7 to C-21) from water to heptane [Smith, R. , and Tanford, C. (1973) Proc. Natl. Acad. Sci. U.S.A. 70, 289-293]. Since the K(M) values are overall similar for all acyl-ACPs tested, the progressive increase in hydrophobic binding energy available from increased chain length is apparently utilized to enhance catalytic steps, which thus provides the underlying physical mechanism for acyl chain selectivity observed with Delta9D.


Asunto(s)
Oxigenasas de Función Mixta/metabolismo , Plantas Tóxicas , Ricinus/enzimología , Cromatografía de Gases y Espectrometría de Masas , Cinética , Oxigenasas de Función Mixta/antagonistas & inhibidores , Oxigenasas de Función Mixta/química , Proteínas Recombinantes/antagonistas & inhibidores , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato
10.
Protein Expr Purif ; 15(3): 314-26, 1999 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-10092491

RESUMEN

Spinach ACP isoform I was overexpressed in Escherichia coli BL21(DE3) using a gene synthesized from codons associated with high-level expression in E. coli. The synthetic gene has extensive changes in codon usage (23 of 77 total codons) relative to that of the originally synthesized plant gene (P. D. Beremand et al., 1987, Arch. Biochem. Biophys. 256, 90-100). After expression of the new synthetic gene, purified ACP and ACP-His6 were obtained in yields of up to 70 mg L-1 of culture medium, compared to approximately 1-6 mg L-1 of purified ACP obtained from the gene composed of predicted spinach codons. In either shaken flask or fermentation culture, approximately 15% conversion to holo-ACP or holo-ACP-His6 was obtained regardless of the level of protein expression. However, coexpression of ACP-His6 with E. coli holo-ACP synthase in E. coli BL21(DE3) during pH- and dissolved O2-controlled fermentation routinely yielded greater than 95% conversion to holo-ACP-His6. Electrospray ionization mass spectrometric analysis of the purified recombinant ACPs revealed that the amino terminal Met was efficiently removed, but only if the bacterial cell lysates were prepared in the absence of EDTA. This observation is consistent with the inhibition of endogenous Met-aminopeptidase by removal of catalytically essential Co(II) and introduces the importance of considering the catalytic properties of host enzymes providing ad hoc posttranslational modification of recombinant proteins. Stearoyl-ACP-His6 was shown to be indistinguishable from stearoyl-ACP as a substrate for enzymatic acylation and desaturation. In combination, these studies provide a coordinated scheme to produce and characterize quantities of acyl-ACPs sufficient to support expanded biophysical and structural studies.


Asunto(s)
Proteína Transportadora de Acilo/biosíntesis , Panteteína/análogos & derivados , Procesamiento Proteico-Postraduccional , Spinacia oleracea/metabolismo , Proteína Transportadora de Acilo/genética , Proteína Transportadora de Acilo/aislamiento & purificación , Acilación , Secuencia de Aminoácidos , Secuencia de Bases , Cromatografía de Afinidad , Cromatografía en Gel , Cromatografía por Intercambio Iónico , Clonación Molecular/métodos , Escherichia coli , Genes de Plantas , Genes Sintéticos , Histidina , Datos de Secuencia Molecular , Panteteína/metabolismo , Isoformas de Proteínas/biosíntesis , Isoformas de Proteínas/genética , Isoformas de Proteínas/aislamiento & purificación , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/aislamiento & purificación , Mapeo Restrictivo , Spinacia oleracea/genética
11.
Protein Expr Purif ; 16(1): 109-19, 1999 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-10336868

RESUMEN

An increasing demand for isotopically labeled samples for spectroscopic and crystallographic studies has led to a corresponding need for effective and efficient methods for producing these samples. The present work is based on the strategy of using an isotopically labeled compound as the growth-limiting nutrient during protein expression in Escherichia coli (DE3) strains. By using dissolved O2 and agitation rate data, the cell growth, feeding of the isotopic label, induction of protein expression, and the harvest of cells can be coordinated in a feedback controlled fermenter in a simple, easily defined manner. This approach is demonstrated for the nutrient-limited production of [U-15N]- and [U-13C, U-15N]-labeled toluene 4-monooxygenase effector protein in E. coli BL21(DE3) with isotopic abundance identical to that of the labeled precursors. For selective labeling, demonstrated with selenomethionine using methionine auxotroph E. coli B834(DE3), approximately 80-85% incorporation was obtained from methionine-dependent growth of the auxotroph followed by selenomethionine feeding and protein induction upon methionine depletion. This selective labeling is accomplished in a single culture, does not require washing or resuspension, minimizes costly incorporation of label into host cell mass prior to induction, and can be easily adapted to selective labeling with other amino acids. Moreover, cell mass yield from these experiments can be readily optimized to provide the desired level of protein for a given investigation from a single growth and purification. This combination provides an efficient, controllable option for isotopic labeling experiments.


Asunto(s)
Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/aislamiento & purificación , Secuencia de Bases , Isótopos de Carbono , Cartilla de ADN/genética , Escherichia coli/genética , Escherichia coli/crecimiento & desarrollo , Escherichia coli/metabolismo , Fermentación , Expresión Génica , Genes Bacterianos , Isótopos de Nitrógeno , Oxigenasas/biosíntesis , Oxigenasas/genética , Oxigenasas/aislamiento & purificación , Pseudomonas/enzimología , Pseudomonas/genética , Proteínas Recombinantes/genética , Selenometionina/metabolismo
12.
Biochem J ; 219(3): 1043-7, 1984 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-6743239

RESUMEN

Potentiometric titrations of pig liver electron-transfer flavoprotein (ETF) were performed at pH 7.5 and 4 degrees C, both in the reductive and oxidative directions. Reduction of ETF to the hydroquinone form required a total of two reducing equivalents/mol of ETF with the formation of sub-stoichiometric amounts of anionic semiquinone as an intermediate. The oxidation-reduction potentials for the two one-electron couples, oxidized ETF/ETF semiquinone and ETF semiquinone/fully reduced ETF, are +4 mV and -50 mV respectively. The overall midpoint potential for the two-electron couple (oxidized ETF/fully reduced ETF) is -23 mV.


Asunto(s)
Flavoproteínas , Mitocondrias Hepáticas/análisis , Animales , Transporte de Electrón , Flavoproteínas Transportadoras de Electrones , Oxidación-Reducción , Potenciometría , Quinonas , Porcinos
13.
Protein Expr Purif ; 20(2): 274-84, 2000 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-11049751

RESUMEN

Escherichia coli acyl carrier protein (ACP) contains a single tyrosine residue at position 71. The combined o-nitration of apo-ACP Y71 by tetranitromethane and reduction to 3-aminotyrosyl-apo-ACP were performed to introduce a specific site for attachment of a dansyl fluorescent label. Conditions for purification and characterization of dansylaminotyrosyl-apo-ACP are reported. Dansylaminotyrosyl-apo-ACP was enzymatically phosphopantetheinylated and acylated in vitro with an overall approximately 30% yield of purified stearoyl-dansylaminotyrosyl-ACP starting from unmodified apo-ACP. The steady-state kinetic parameters k(cat) = 22 min(-1) and K(M) = 2.7 microM were determined for reaction of stearoyl-dansylaminotyrosyl-ACP with stearoyl-ACP Delta(9)-desaturase. These results show that dansylaminotyrosyl-ACP will function well for studying binding interactions with the Delta(9)-desaturase and suggest similar possibilities for other ACP-dependent enzymes. The efficient in vivo phosphopantetheinylation of E. coli apo-ACP by coexpression with holo-ACP synthase in E. coli BL21(DE3) using fructose as the carbon source is also reported.


Asunto(s)
Proteína Transportadora de Acilo/aislamiento & purificación , Proteína Transportadora de Acilo/metabolismo , Compuestos de Dansilo/metabolismo , Proteínas de Escherichia coli , Escherichia coli/química , Proteína Transportadora de Acilo/análogos & derivados , Proteína Transportadora de Acilo/química , Proteína Transportadora de Acilo/genética , Acilación , Apoproteínas/química , Apoproteínas/genética , Apoproteínas/aislamiento & purificación , Apoproteínas/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/aislamiento & purificación , Proteínas Bacterianas/metabolismo , Compuestos de Dansilo/química , Compuestos de Dansilo/aislamiento & purificación , Escherichia coli/enzimología , Acido Graso Sintasa Tipo II , Colorantes Fluorescentes/síntesis química , Colorantes Fluorescentes/metabolismo , Regulación Bacteriana de la Expresión Génica , Cinética , Oxigenasas de Función Mixta/metabolismo , Modelos Moleculares , Panteteína/análogos & derivados , Unión Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Espectrometría de Masa por Ionización de Electrospray , Tetranitrometano/metabolismo
14.
Appl Environ Microbiol ; 66(5): 1877-82, 2000 May.
Artículo en Inglés | MEDLINE | ID: mdl-10788354

RESUMEN

Several toluene monooxygenase-producing organisms were tested for their ability to oxidize linear alkenes and chloroalkenes three to eight carbons long. Each of the wild-type organisms degraded all of the alkenes that were tested. Epoxides were produced during the oxidation of butene, butadiene, and pentene but not hexene or octadiene. A strain of Escherichia coli expressing the cloned toluene-4-monooxygenase (T4MO) of Pseudomonas mendocina KR1 was able to oxidize butene, butadiene, pentene, and hexene but not octadiene, producing epoxides from all of the substrates that were oxidized. A T4MO-deficient variant of P. mendocina KR1 oxidized alkenes that were five to eight carbons long, but no epoxides were detected, suggesting the presence of multiple alkene-degrading enzymes in this organism. The alkene oxidation rates varied widely (ranging from 0. 01 to 0.33 micromol of substrate/min/mg of cell protein) and were specific for each organism-substrate pair. The enantiomeric purity of the epoxide products also varied widely, ranging from 54 to >90% of a single epoxide enantiomer. In the absence of more preferred substrates, such as toluene or alkenes, the epoxides underwent further toluene monooxygenase-catalyzed transformations, forming products that were not identified.


Asunto(s)
Alquenos/metabolismo , Oxigenasas/metabolismo , Pseudomonas/enzimología , Pseudomonas/genética , Clonación Molecular , Compuestos Epoxi/metabolismo , Escherichia coli/enzimología , Escherichia coli/genética , Isoenzimas/genética , Isoenzimas/metabolismo , Cinética , Oxigenasas/genética , Pseudomonas/crecimiento & desarrollo , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato
15.
Biochemistry ; 33(43): 12787-94, 1994 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-7947684

RESUMEN

The eukaryotic fatty acid desaturases are iron-containing enzymes that catalyze the NAD-(P)H- and O2-dependent introduction of double bonds into methylene-interrupted fatty acyl chains. Examination of deduced amino acid sequences for the membrane desaturases from mammals, fungi, insects, higher plants, and cyanobacteria has revealed three regions of conserved primary sequence containing HX(3 or 4)H,HX(2 or 3)HH, and HX(2 or 3)HH. This motif is also present in the bacterial membrane enzymes alkane hydroxylase (omega-hydroxylase) and xylene monooxygenase. Hydropathy analyses indicate that these enzymes contain up to three long hydrophobic domains which would be long enough to span the membrane bilayer twice. The conserved His-containing regions have a consistent positioning with respect to these potential membrane spanning domains. Taken together, these observations suggest that the membrane fatty acid desaturases and hydrocarbon hydroxylases have a related protein fold, possibly arising from a common ancestral origin. In order to examine the functional role of these conserved His residues, we have made use of the ability of the rat delta 9 desaturase gene to complement a yeast strain deficient in the delta 9 desaturase gene function (ole1). By site-directed mutagenesis, eight conserved His residues in the rat delta 9 desaturase were individually converted to Ala. Each His-->Ala mutation failed to complement the yeast ole1 mutant. In contrast, mutation of three nonconserved flanking His residues or a partially conserved Arg residue within the conserved motif to Ala allowed for complementation of the ole1 phenotype.(ABSTRACT TRUNCATED AT 250 WORDS)


Asunto(s)
Secuencia Conservada , Sistema Enzimático del Citocromo P-450/química , Histidina , Oxigenasas de Función Mixta/química , Oxigenasas/química , Estearoil-CoA Desaturasa/química , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Catálisis , Citocromo P-450 CYP4A , Prueba de Complementación Genética , Hígado/enzimología , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Filogenia , Pseudomonas/enzimología , Ratas , Saccharomyces cerevisiae/enzimología , Saccharomyces cerevisiae/genética , Estearoil-CoA Desaturasa/genética , Estearoil-CoA Desaturasa/metabolismo
16.
Appl Environ Microbiol ; 62(8): 2716-22, 1996 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-8702263

RESUMEN

Seven toluene-oxidizing bacterial strains (Pseudomonas mendocina KR1, Burkholderia cepacia G4, Pseudomonas putida F1, Pseudomonas pickettii PKO1, and Pseudomonas sp. strains ENVPC5, ENVBF1, and ENV113) were tested for their ability to degrade chloroform (CF). The greatest rate of CF oxidation was achieved with strain ENVBF1 (1.9 nmol/min/mg of cell protein). CF also was oxidized by P. mendocina KR1 (0.48 nmol/min/mg of cell protein), strain ENVPC5 (0.49 nmol/min/mg of cell protein), and Escherichia coli DH510B(pRS202), which contained cloned toluene 4-monooxygenase genes from P. mendocina KR1 (0.16 nmol/min/mg of cell protein). Degradation of [14C]CF and ion analysis of culture extracts revealed that CF was mineralized to CO2 (approximately 30 to 57% of the total products), soluble metabolites (approximately 15%), a total carbon fraction irreversibly bound to particulate cellular constituents (approximately 30%), and chloride ions (approximately 75% of the expected yield). CF oxidation by each strain was inhibited in the presence of trichloroethylene, and acetylene significantly inhibited trichloroethylene oxidation by P. mendocina KR1. Differences in the abilities of the CF-oxidizing strains to degrade other halogenated compounds were also identified. CF was not degraded by B. cepacia G4, P. putida F1, P. pickettii PKO1, Pseudomonas sp. strain ENV113, or P. mendocina KRMT, which contains a tmo mutation.


Asunto(s)
Cloroformo/metabolismo , Pseudomonas/metabolismo , Tolueno/metabolismo , Acetileno/farmacología , Secuencia de Bases , Cloruros/metabolismo , Metano/farmacología , Datos de Secuencia Molecular , Oxidación-Reducción
17.
Proc Natl Acad Sci U S A ; 90(6): 2486-90, 1993 Mar 15.
Artículo en Inglés | MEDLINE | ID: mdl-8460163

RESUMEN

A gene encoding stearoyl-acyl carrier protein delta 9 desaturase (EC 1.14.99.6) from castor was expressed in Escherichia coli. The purified catalytically active enzyme contained four atoms of iron per homodimer. The desaturase was studied in two oxidation states with Mössbauer spectroscopy in applied fields up to 6.0 T. These studies show conclusively that the oxidized enzyme contains two (identical) clusters consisting of a pair of antiferromagnetically coupled (J > 60 cm-1, H = JS1.S2) Fe3+ sites. The diferric cluster exhibited absorption bands from 300 to 355 nm; addition of azide elicited a charge transfer band at 450 nm. In the presence of dithionite, the clusters were reduced to the diferrous state. Addition of stearoyl-CoA and O2 returned the clusters to the diferric state. These properties are consistent with assigning the desaturase to the class of O2-activating proteins containing diiron-oxo clusters, most notably ribonucleotide reductase and methane monooxygenase hydroxylase. Comparison of the primary structures for these three catalytically diverse proteins revealed a conserved pair of the amino acid sequence -(Asp/Glu)-Glu-Xaa-Arg-His- separated by approximately 100 amino acids. Since each of these proteins can catalyze O2-dependent cleavage of unactivated C--H bonds, we propose that these amino acid sequences represent a biological motif used for the creation of reactive catalytic intermediates. Thus, eukaryotic fatty acid desaturation may proceed via enzymatic generation of a high-valent iron-oxo species derived from the diiron cluster.


Asunto(s)
Hierro/análisis , Oxigenasas de Función Mixta/química , Plantas Tóxicas , Ricinus/enzimología , Secuencia de Aminoácidos , Clonación Molecular , Ditionita , Escherichia coli/genética , Genes de Plantas , Oxigenasas de Función Mixta/genética , Datos de Secuencia Molecular , Oligodesoxirribonucleótidos , Sistemas de Lectura Abierta , Oxidación-Reducción , Reacción en Cadena de la Polimerasa/métodos , Proteínas Recombinantes/química , Ricinus/genética , Homología de Secuencia de Aminoácido , Espectrofotometría , Análisis Espectral
18.
J Bacteriol ; 181(20): 6254-63, 1999 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-10515912

RESUMEN

The genes encoding flavin mononucleotide-containing oxidoreductases, designated xenobiotic reductases, from Pseudomonas putida II-B and P. fluorescens I-C that removed nitrite from nitroglycerin (NG) by cleavage of the nitroester bond were cloned, sequenced, and characterized. The P. putida gene, xenA, encodes a 39,702-Da monomeric, NAD(P)H-dependent flavoprotein that removes either the terminal or central nitro groups from NG and that reduces 2-cyclohexen-1-one but did not readily reduce 2,4,6-trinitrotoluene (TNT). The P. fluorescens gene, xenB, encodes a 37,441-Da monomeric, NAD(P)H-dependent flavoprotein that exhibits fivefold regioselectivity for removal of the central nitro group from NG and that transforms TNT but did not readily react with 2-cyclohexen-1-one. Heterologous expression of xenA and xenB was demonstrated in Escherichia coli DH5alpha. The transcription initiation sites of both xenA and xenB were identified by primer extension analysis. BLAST analyses conducted with the P. putida xenA and the P. fluorescens xenB sequences demonstrated that these genes are similar to several other bacterial genes that encode broad-specificity flavoprotein reductases. The prokaryotic flavoprotein reductases described herein likely shared a common ancestor with old yellow enzyme of yeast, a broad-specificity enzyme which may serve a detoxification role in antioxidant defense systems.


Asunto(s)
Proteínas Bacterianas , Flavoproteínas/genética , Oxidorreductasas/genética , Pseudomonas putida/genética , Xenobióticos/metabolismo , Secuencia de Aminoácidos , Composición de Base , Secuencia de Bases , Clonación Molecular , Ciclohexanonas/metabolismo , Escherichia coli/genética , Flavoproteínas/metabolismo , Genes Bacterianos , Datos de Secuencia Molecular , Nitroglicerina/metabolismo , Oxidorreductasas/metabolismo , Pseudomonas putida/enzimología , Proteínas Recombinantes/metabolismo , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Especificidad por Sustrato , Transcripción Genética , Trinitrotolueno/metabolismo
19.
J Biol Chem ; 263(22): 10553-6, 1988 Aug 05.
Artículo en Inglés | MEDLINE | ID: mdl-2839495

RESUMEN

Mössbauer and EPR studies of a highly active hydroxylase component of methane monooxygenase isolated from Methylosinus trichosporium OB3b are reported. The Mössbauer spectra of the oxidized (as isolated) hydroxylase show iron in a diamagnetic cluster containing an even number of Fe3+ sites. The parameters are consistent with an antiferromagnetically coupled binuclear cluster similar to those of hemerythrin and purple acid phosphatases. Upon partial reduction of the hydroxylase, an S = 1/2 EPR spectrum with g values at 1.94, 1.86, and 1.75 (gav = 1.85) is observed. Such spectra are characteristic of oxo-bridged iron dimers in the mixed valent Fe(II).Fe(III) state. Further reduction leads to the appearance of a novel EPR resonance at g = 15. Comparison with an inorganic model compound for mu-oxo-bridged binuclear iron suggests that the g = 15 signal is characteristic of the doubly reduced state of the cluster in the protein. In this state, the Mössbauer spectra exhibit two quadrupole doublets typical of high spin Fe2+, consistent with the Fe(II).Fe(II) form of the cluster. The spectral features of the iron center of the hydroxylase in three oxidation states are all similar to those reported for mu-oxo (or mu-hydroxo)-bridged binuclear iron clusters. Since no known monooxygenase contains such a cluster, a new oxygenase mechanism is suggested. Three different preparative methods yielded hydroxylases spanning a 9-fold range in specific activity, yet the same cluster concentration and spectral characteristics were observed. Thus, other parameters than those measured here have a major influence on the activity.


Asunto(s)
Oxigenasas/metabolismo , Espectroscopía de Resonancia por Spin del Electrón , Euryarchaeota/enzimología , Hierro/análisis , Oxigenasas de Función Mixta/metabolismo , Análisis Espectral
20.
J Biol Chem ; 266(1): 540-50, 1991 Jan 05.
Artículo en Inglés | MEDLINE | ID: mdl-1845980

RESUMEN

Kinetic, spectroscopic, and chemical evidence for the formation of specific catalytically essential complexes between the three protein components of the soluble form of methane monooxygenase from Methylosinus trichosporium OB3b is reported. The effects of the concentrations of the reductase and component B on the hydroxylation activity of the reconstituted enzyme system has been numerically simulated based on a kinetic model which assumes formation of multiple high affinity complexes with the hydroxylase component during catalysis. The formation of several of these complexes has been directly demonstrated. By using EPR spectroscopy, the binding of approximately 2 mol of component B/mol of hydroxylase (subunit structure (alpha beta gamma)2) is shown to significantly change the electronic environment of the mu-(H/R)-oxo-bridged binuclear iron cluster of the hydroxylase in both the mixed valent (Fe(II).Fe(III)) and fully reduced (Fe(II).Fe(II)) states. Protein-protein complexes between the reductase and component B as well as between the reductase and hydroxylase have been shown to form by monitoring quenching of the tryptophan fluorescence spectrum of either the component B (KD approximately 0.4 microM) or hydroxylase (two binding sites, KDa approximately 10 nM, KDb approximately 8 microM). The observed KD values are in agreement with the best fit values from the kinetic simulation. Through the use of the covalent zero length cross-linking reagent 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide (EDC), the binding sites of the component B and reductase were shown to be on the hydroxylase alpha and beta subunits, respectively. The alpha and beta subunits of the hydroxylase are cross-linked by EDC suggesting that they are juxtaposed. EDC also caused the rapid loss of the ability of the monomeric component B to stimulate the hydroxylation reaction suggesting that cross-linking of reactive groups on the protein surface had occurred. This effect was inhibited by the presence of hydroxylase and was accompanied by a loss of the ability of the component B to bind to the hydroxylase. Thus, formation of a component B-hydroxylase complex is apparently required for effective catalysis linked to NADH oxidation. When present in concentrations greater than required to saturate the initial hydroxylase complex, component B inhibited both the rate of the enzymic reaction and the cross-linking of the reductase to the hydroxylase. This suggests that a second complex involving component B can form that negatively regulates catalysis by preventing formation of the reductase-hydroxylase complex.


Asunto(s)
Methylococcaceae/enzimología , Oxigenasas/metabolismo , Secuencia de Aminoácidos , Sitios de Unión , Espectroscopía de Resonancia por Spin del Electrón , Electroforesis en Gel de Poliacrilamida , Cinética , Sustancias Macromoleculares , Modelos Teóricos , Datos de Secuencia Molecular , Peso Molecular , Oxigenasas/aislamiento & purificación , Espectrometría de Fluorescencia
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