Singlet oxygenation of triquinacene, barrelene, and homobarrelene.

The singlet oxygenation of three polycyclic hydrocarbons, triquinacene, barrelene and homobarrelene was studied. Triquinacene reacted by way of a perepoxide intermediate, transferring an oxygen atom to another triquinacene molecule to give exclusively the mono epoxide. Barrelene, on the other hand, underwent a rare homo-Diels-Alder reaction with 1O2 to give the decomposition product from the initial tetracyclic 1,2-dioxolane leading to benzofuran. The latter reacted with 1O2 in a [2+2] cycloaddition to give an unstable 1,2-dioxetane which collapsed to 2-formylphenyl formate. The latter was independently synthesize via singlet oxygenation of authentic benzofuran. Homobarrelene reacted in a similar fashion to give a homoDiels product, decomposition of which led to a keto aldehyde which was characterized spectroscopically. Computational work confirms the barrelene and homobarrelene reactions with 1O2 as concerted [π2s+π2s+π2s] cycloadditions.

An Oxy-anion Accelerated [1,5]-o-Quinone Methide Shift During the Nucleophilic Epoxidation of Salicylfulvene.

A new facet of nucleophilic fulvene epoxidations has been uncovered. 6-Arylfulvenes containing an ortho or para hydroxyl group react with basic hydrogen peroxide in an unusual manner; the epoxidation of the fulvene exocyclic double bond is followed by a phenoxide ion initiated epoxide ring opening to form an o-quinone methide (o-QM) intermediate. The resulting cyclopentadienolate undergoes an unusual oxy-anion accelerated [1,5]-sigmatropic o-QM shift. Computational studies reveal that the activation energy for the [1,5]-QM-shift in the cyclopentadienolate intermediate is quite low, signifying the acceleration caused by the oxy-anion group. Placement of a second hydroxyl group in the 6-aryl ring at C5 epoxidation via electron donation to the o-QM carbon; instead, an intramolecular oxa-6-π-electrocyclization of the o-QM intermediate onto the cyclopentadiene is observed.

Substitution Reactions on Iodine and Bromine: Mechanisms for Facile Halogenations of Heterocycles.

Gas-phase techniques were used to examine the halogenation of deprotonated heterocycles by perfluoroaryl and perfluoroalkyl halides. The results indicate that SN2@Br and SN2@I reactions can be very facile and are effective means of halogenating heterocycles. 2-Iodoheptafluoropropane is exceptionally selective for SN2@I reactions with yields upward of 90%. The results also provide evidence counter to the recent suggestion that t-butoxide-induced halogenations of heterocycles proceed via a radical mechanism.

Gas-Phase Dehydrogenation of Alkanes: C-H Activation by a Graphene-Supported Nickel Single-Atom Catalyst Model.

A gas-phase anionic nickel(0) fluorenyl complex is shown to effect the dehydrogenation of linear, branched, and cyclic alkanes via C-H activation. It performs dehydrogenations via a C-H insertion followed by ß-hydride elimination. When given energy via collision-induced dissociation, the system is capable of second and third dehydrogenations to form dienes and aromatics such as benzene. Kinetic isotope effects and DFT calculations completed at the M06/6-311+G** level support the proposed mechanism. The metal complex can act as an experimental model for graphene-supported nickel single-atom catalysts and suggests that these catalysts are capable of alkane dehydrogenation via C-H activation.

Imidazolidin-4-ones via (3+2) cycloadditions of aza-oxyallyl cations onto (E)-Narylideneanilines.

In the course of our studies on the chemistry of oxyallyl species we uncovered a new (3+2) cycloaddition of aza-oxyallyl systems, generated in situ from N-benzyloxy-2-chloroamides in the presence of NEt3, onto N-arylimines yielding imidazolidin-4-ones in moderate to good yields. The cycloadditions are regioselective. Computational modelling using DFT at the M062×/6-311+G** level is in support the observed regioselectivities. Although the path to the trans imidazolin-4-one is favored, the cis product is preferred by almost 8 kcal/mol and could be formed by base-catalyzed epimerization. All products were isolated by chromatography and characterized by means of their FTIR, NMR and HRMS data.

Diverse modes of reactivity of 6-(chloromethyl)-6-methylfulvene.

The title compound exhibits a number of reactivities toward nucleophiles/bases owing to the presence of several electrophilic and potentially nucleophilic sites in the molecule. We explored the reactions of 6-(chloromethyl)-6-methylfulvene with oxygen- and nitrogen nucleophiles and bases as well as a carbon-based nucleophile (an enamine) and realized all possible reactivity modes predicted on the basis of electrophilic and nucleophilic positions in this compound.

Cyclopentadienones via a tandem C-cyclopropylnitrone cyclization-cycloreversion sequence.

Aldonitrones derived from spiro[2.4]hepta-4,6-diene-1-carbaldehyde and its benzo analog undergo a tandem uncatalyzed intramolecular cyclopropane-nitrone cyclization-5,6-dihydro-1,2-oxazine cycloreversion to give cyclopentadienones. Similarly, the NH-nitrone generated in situ from spiro[cyclopropane-1,1'-indene]carbaldehyde oxime leads to benzocyclopentadienone (1H-inden-1-one) by the same mechanism. DFT calculations are in favor of a concerted yet highly asynchronous pathway for the cyclizations. Control experiments with the dihydro and tetrahydro derivatives show that the spirocyclopentadiene unit is essential for the success of the reaction, invoking spiroconjugative effects for increased cyclopropane reactivity.

Effect of Ring Size and Migratory Groups on [1,n] Suprafacial Shift Reactions. Confirmation of Aromatic and Antiaromatic Transition-State Character by Ring-Current Analysis.

Suprafacial sigmatropic shift reactions of 5-substituted cyclopentadienes, 3-substituted cyclopropenes, and 7-substituted cycloheptatrienes have been studied computationally at the MP2/6-31+G* level for structures and energetics and with the ipsocentric method at the CHF/6-31G** level to calculate current-density maps. The hydrogen shifts in cyclopentadienes have a diatropic ring current indicating aromatic, cyclopentadienide anion character. This result stands in contrast to the fluorine shift in 5-fluorocyclopentadiene which requires much more energy and has a paratropic ring current in the TS pointing to antiaromatic, cyclopentadienyl cation character. [1,3] hydrogen shifts in cyclopropenes are very difficult, passing through transition states that have an extended C-C bond. For 3-fluorocyclopropene, the [1,3] fluorine shift is much easier than the hydrogen shift. For 7-fluorocycloheptatriene, the [1,7] hydrogen shift is predicted but requires very high energy and has a paratropic ring current and antiaromatic character. The [1,7] suprafacial fluorine shift is relatively easy, having a TS with cycloheptatrienyl cation character. Patterns of currents, and the reversal for H and F migration, are rationalized by orbital analysis based on the ipsocentric method. Calculated charges and structural features for reactants and transition states support these conclusions.

A cleavable biotin tagging reagent that enables the enrichment and identification of carbonylation sites in proteins.

The utility of a new, cleavable tag for identifying and enriching protein carbonyls is examined. Using a model system, human serum albumin modified with acrolein, the EZ-Link alkoxyamine-PEG4-SS-PEG4-biotin affinity tag, was tested for its ability to label protein carbonyls in proteomic analyses of protein carbonylation. The efficiency of the labeling was assayed and compared to standard biotin hydrazide reagents. The label was also tested in liquid chromatography-tandem mass spectrometry (LC/MS/MS) experiments. The quality of the fragmentation spectra was assessed and the relative detection efficiency of various modification sites was compared to standard biotin hydrazide reagents. Finally, the viability of using the label with streptavidin bead enrichment protocols in a standard proteomics workflow was probed.

Unusual hydroxyl effect on fulvene endoperoxide decompositions.

The thermal decomposition of fulvene endoperoxides ordinarily proceeds via an allene oxide intermediate affording oxepin-2(3H)-one derivatives. We have now uncovered new, unusual pathways in these decompositions where the presence of a hydroxyl group on the alkyl or aryl attached to the fulvene exocyclic double bond has a profound effect on the fate of the reactive intermediates derived from the unstable endoperoxides. Computational work supports the proposed mechanistic pathways.

Electron flow into cytochrome c coupled with reactive oxygen species from the electron transport chain converts cytochrome c to a cardiolipin peroxidase: role during ischemia-reperfusion.

BACKGROUND: Cytochrome c (Cyt c) is a mobile component of the electron transport chain (ETC.) which contains a tightly coordinated heme iron. In pathologic settings, a key ligand of the cyt c's heme iron, methionine (Met80), is oxidized allowing cyt c to participate in reactions as a peroxidase with cardiolipin as a target. Myocardial ischemia (ISC) results in ETC. blockade and increased production of reactive oxygen species (ROS). We hypothesized that during ischemia-reperfusion (ISC-REP); ROS generation coupled with electron flow into cyt c would oxidize Met80 and contribute to mitochondrial-mediated ETC. damage. METHODS: Mitochondria were incubated with specific substrates and inhibitors to test the contributions of ROS and electron flow into cyt c. Subsequently, cyt c and cardiolipin were analyzed. To test the pathophysiologic relevance, mouse hearts that underwent ISC-REP were tested for methionine oxidation in cyt c. RESULTS: The combination of substrate/inhibitor showed that ROS production and electron flux through cyt c are essential for the oxidation of methionine residues that lead to cardiolipin depletion. The content of cyt c methionine oxidation increases following ISC-REP in the intact heart. CONCLUSIONS: Increase in intra-mitochondrial ROS coupled with electron flow into cyt c, oxidizes cyt c followed by depletion of cardiolipin. ISC-REP increases methionine oxidation, supporting that cyt c peroxidase activity can form in the intact heart. GENERAL SIGNIFICANCE: This study identifies a new site in the ETC. that is damaged during cardiac ISC-REP. Generation of a neoperoxidase activity of cyt c favors the formation of a defective ETC. that activates signaling for cell death.

Are copper(I) carbenes capable intermediates for cyclopropanations? The case for ylide intermediates.

A novel approach is used to synthesize a stable, ligated copper(I) carbene in the gas phase that is capable of typical metal carbenoid chemistry. However, it is shown that copper(I) carbenes generally undergo rapid unimolecular rearrangements including insertions into copper-ligand bonds and Wolff rearrangements. The results indicate that most copper(I) carbenes are inherently unstable and would not be viable intermediates in condensed-phase applications; an alternative intermediate that is less prone to rearrangements is required. Computational data suggest that ylides formed by the complexation of the carbene with solvent or other weak nucleophiles are viable intermediates in the reactions of copper(I) carbenes.

The Competition between Elimination Pathways in the Reactions of a Wide Variety of Bases with 2-Fluoro- and 2-Chlorobutane in the Gas Phase.

Ab initio methods are used to examine the regio- and stereoselectivities of the elimination reactions of 2-fluorobutane and 2-chlorobutane with a series of nucleophiles (F(-), HO(-), CH3O(-), (CH3)3CO(-), NH2(-), CH3(-), H(-), Cl(-), HS(-), and PH2(-)). The data suggest that regiochemistry is most closely related to the nature of the transition state on the E2 spectrum with E1cb-like reactions favoring the least-substituted alkene product and E1-like reactions favoring the most-substituted alkene product. There appears to be no correlation between the extent of π-bond formation (as measured by the Cα-Cß distance) and the preference for forming the more highly substituted alkene. The stereochemistry (E vs Z) is less sensitive to the nucleophile and is relatively constant with the exception of a few systems that appear to have long-range interactions that reduce the bias against the Z product. Comparisons with experimental results in solution show, with a few exceptions, similar reactivity trends in solution and the gas phase.

Protonated polycyclic aromatic nitrogen heterocyclics: proton affinities, polarizabilities, and atomic and ring charges of 1-5-ring ions.

Calculated proton affinities, polarizabilities, and some ionization energies and atomic and ring NBO charges are reported for 31 polycyclic aromatic nitrogen heterocyclics (PANHs) with 1-5 rings, calculated on the on the M06-2X/6-311+g**//B3LYP/6-31g* level of theory. The calculated proton affinities from 226 to 241 kcal mol(-1) for 3-5-ring compounds, predict well the relative experimental values. The proton affinities increase with increasing molecular size and show a linear correlation with polarizabilities. Linear geometry and nitrogen located in the central ring also favor increased proton affinity. These trends estimate a PA > 241 kcal mol(-1) for an infinite linear chain, end-ring-N PANH molecule, and >261 kcal mol(-1) for an edge-N-doped graphene sheet, making it a superbase. NBO analysis shows that from pyridineH(+) to large 5-ring ions, the N-H nitrogen carries a constant q(N) = -0.46 ± 0.1 charge, and the N-H hydrogen a constant q(H) = 0.43 ± 0.01 positive charge, similar to the q(H) in NH4(+). Overall, the NH group is nearly electrically neutral, and a nearly full positive charge is distributed on the aromatic hydrocarbon rings of the ions. When the nitrogen is in a central ring, that ring is negative, and the positive ionic charge is delocalized toward the end rings. When the nitrogen is in an end ring, the ionic charge is distributed more evenly. Increasing proton affinities with increasing polarizability result not from increasing charge transfer from the proton to the aromatic rings, but from increasing delocalization of the transferred charge in the aromatic hydrocarbon rings of the ions. In two-nitrogen compounds, interactions between the ring nitrogens decrease the proton affinities, but this effect decreases in larger ions.

Protonation energies of 1-5-ring polycyclic aromatic nitrogen heterocyclics: comparing experiment and theory.

Polycyclic nitrogen heterocyclic compounds (PANHs) can be protonated in the gas phase in mass spectrometry, in solution in acidic and biological environments, and if present, in interstellar clouds. Intrinsic molecular effects on PANH basicities can be observed by their gas phase protonation thermochemistry. We determined the gas phase basicities/proton affinities (GBs/PAs) of prototype one-nitrogen, 3-5-ring PANH compounds of increasing sizes and polarizabilities by kinetic bracketing, using proton transfer reactions to reference bases. The experimental proton affinities increase from 1-ring (pyridine, 222.2); to 2-ring (quinoline, 227.8); to 3-5-ring compounds, 227-234 kcal mol(-1). We also calculated the GB/PA values at the M06-2X/6-311+G**//B3LYP/6-31g* level. The computed PAs agree, within the experimental uncertainty, with the experimental values anchored to the upper range of the NIST GB/PA database. Specifically, the computed PAs are smaller than the experimental values by 1.4 ± 0.9 kcal/mol for nonaromatic nitrogen reference bases and for 1-5-ring PANHs, independently of the number of rings, aromaticity, and molecular size. Therefore, a useful method to calculate proton affinities of PANH compounds can use M06-2X/6-311+G**//B3LYP/6-31g* computational PAs + 1.4 ± 0.9 kcal mol(-1). The agreement with experiment supports the NIST database within this accuracy, in the upper range up to 235 kcal mol(-1), even though there are no direct absolute experimental anchor points in this range. For astrochemical applications, the measured PAs allow calculating the energies of the (PANH)(+•) + H2 → (PANH)H(+) + H(•) reactions that may convert the radical ions to less reactive 11-electron ions. The reactions are endothermic or nearly thermoneutral for the 3-5-ring ions and would be very slow at low temperatures, allowing reactive (PANH)(+•) radical ions to persist in interstellar clouds.

Pyrrolidine catalyzed reactions of cyclopentadiene with α,ß-unsaturated carbonyl compounds: 1,2- versus 1,4-additions.

A systematic study of the reactions of cyclopentadiene with α,ß-unsaturated carbonyl compounds in the presence of catalytic pyrrolidine-H2O revealed that the reactions can either proceed with a Michael attack at the ß-carbon of enone, or 1,2-addition to the carbonyl, leadingeither to 4-cyclopentadienyl-2-butanones or 6-vinylfulvenes. The former can be isolated and/or converted to the corresponding 1,2-dihydropentalenes with base (or in one-pot at longer reaction times). Substitution pattern on the enones on the competing pathways have been studied and consistent mechanisms are proposed.

Intermolecular C-H Bond Activation by a Cationic Iridium(III) Dichloride Phenanthroline Complex.

It is demonstrated that a cationic iridium(III) dichloride phenanthroline complex is capable of C-H activation and H/D exchange. It can cleave benzylic and unactivated secondary C-H bonds, but exhibits unique selectivity when compared to similar systems that have been studied in the condensed phase. Gas-phase rate constants and kinetic isotope effects are reported for a variety of substrates and the analysis is supported by DFT calculations at the M06/QZVP level.

Paraquat exposure and Sod2 knockdown have dissimilar impacts on the Drosophila melanogaster carbonylated protein proteome.

Exposure to Paraquat and RNA interference knockdown of mitochondrial superoxide dismutase (Sod2) are known to result in significant lifespan reduction, locomotor dysfunction, and mitochondrial degeneration in Drosophila melanogaster. Both perturbations increase the flux of the progenitor ROS, superoxide, but the molecular underpinnings of the resulting phenotypes are poorly understood. Improved understanding of such processes could lead to advances in the treatment of numerous age-related disorders. Superoxide toxicity can act through protein carbonylation. Analysis of carbonylated proteins is attractive since carbonyl groups are not present in the 20 canonical amino acids and are amenable to labeling and enrichment strategies. Here, carbonylated proteins were labeled with biotin hydrazide and enriched on streptavidin beads. On-bead digestion was used to release carbonylated protein peptides, with relative abundance ratios versus controls obtained using the iTRAQ MS-based proteomics approach. Western blotting and biotin quantitation assay approaches were also investigated. By both Western blotting and proteomics, Paraquat exposure, but not Sod2 knockdown, resulted in increased carbonylated protein relative abundance. For Paraquat exposure versus control, the median carbonylated protein relative abundance ratio (1.53) determined using MS-based proteomics was in good agreement with that obtained using a commercial biotin quantitation kit (1.36).

Carbonylation of mitochondrial aconitase with 4-hydroxy-2-(E)-nonenal: localization and relative reactivity of addition sites.

Mass spectrometry was used to investigate the effects of exposing mitochondrial aconitase (ACO2) to the membrane lipid peroxidation product, 4-hydroxy-2-(E)-nonenal (HNE). ACO2 was selected for this study because (1) it is known to be inactivated by HNE, (2) elevated concentrations of HNE-adducted ACO2 have been associated with disease states, (3) extensive structural information is available, and (4) the iron-sulfur cluster in ACO2 offers a critical target for HNE adduction. The aim of this study was to relate the inactivation of ACO2 by HNE to structural features. Initially, Western blotting and an enzyme activity assay were used to assess aggregate effects and then gel electrophoresis, in-gel digestion, and tandem mass spectrometry (MS/MS) were used to identify HNE addition sites. HNE addition reaction rates were determined for the most significant sites using the iTRAQ approach. The most reactive sites were Cys(358), Cys(421), and Cys(424), the three iron-sulfur cluster-coordinating cysteines, Cys(99), the closest non-ligated cysteine to the cluster, and Cys(565), which is located in the cleft leading to the active site. Interestingly, both enzyme activity assay and iTRAQ relative abundance plots appeared to be trending toward horizontal asymptotes, rather than completion.

Aromatic superhalogens.

No organic molecules with electron affinities near or above those of halogens are known. We show for the first time that aromaticity rules can be used to design molecules with electron affinities far exceeding those of halogen atoms either by tailoring the ligands of cyclopentadienyl or by multiple benzoannulations of cyclopentadienyl in conjunction with the substitution of CH groups with isoelectronic N atoms. Results based on density functional theory revealed that the electron affinities of some of these organic molecules can reach as high as 5.59 eV, thus opening the door to new class of superhalogens that contain neither a metal nor a halogen atom.