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1.

A Network of Conserved Synthetic Lethal Interactions for Exploration of Precision Cancer Therapy.

Srivas, Rohith; Shen, John Paul; Yang, Chih Cheng; Sun, Su Ming; Li, Jianfeng; Gross, Andrew M; Jensen, James; Licon, Katherine; Bojorquez-Gomez, Ana; Klepper, Kristin; Huang, Justin; Pekin, Daniel; Xu, Jia L; Yeerna, Huwate; Sivaganesh, Vignesh; Kollenstart, Leonie; van Attikum, Haico; Aza-Blanc, Pedro; Sobol, Robert W; Ideker, Trey.

Mol Cell ; 63(3): 514-25, 2016 08 04.

Artículo en Inglés | MEDLINE | ID: mdl-27453043

2.

Methylome-wide Analysis of Chronic HIV Infection Reveals Five-Year Increase in Biological Age and Epigenetic Targeting of HLA.

Gross, Andrew M; Jaeger, Philipp A; Kreisberg, Jason F; Licon, Katherine; Jepsen, Kristen L; Khosroheidari, Mahdieh; Morsey, Brenda M; Swindells, Susan; Shen, Hui; Ng, Cherie T; Flagg, Ken; Chen, Daniel; Zhang, Kang; Fox, Howard S; Ideker, Trey.

Mol Cell ; 62(2): 157-168, 2016 04 21.

Artículo en Inglés | MEDLINE | ID: mdl-27105112

3.

Copy-number variants in clinical genome sequencing: deployment and interpretation for rare and undiagnosed disease.

Gross, Andrew M; Ajay, Subramanian S; Rajan, Vani; Brown, Carolyn; Bluske, Krista; Burns, Nicole J; Chawla, Aditi; Coffey, Alison J; Malhotra, Alka; Scocchia, Alicia; Thorpe, Erin; Dzidic, Natasa; Hovanes, Karine; Sahoo, Trilochan; Dolzhenko, Egor; Lajoie, Bryan; Khouzam, Amirah; Chowdhury, Shimul; Belmont, John; Roller, Eric; Ivakhno, Sergii; Tanner, Stephen; McEachern, Julia; Hambuch, Tina; Eberle, Michael; Hagelstrom, R Tanner; Bentley, David R; Perry, Denise L; Taft, Ryan J.

Genet Med ; 21(5): 1121-1130, 2019 05.

Artículo en Inglés | MEDLINE | ID: mdl-30293986

4.

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor.

Gendron, Joshua M; Pruneda-Paz, José L; Doherty, Colleen J; Gross, Andrew M; Kang, S Earl; Kay, Steve A.

Proc Natl Acad Sci U S A ; 109(8): 3167-72, 2012 Feb 21.

Artículo en Inglés | MEDLINE | ID: mdl-22315425

5.

Brevity of haptic force perturbations induces heightened adaptive sensitivity.

Wanda, Paul A; Fine, Michael S; Weeks, Heidi M; Gross, Andrew M; Macy, Jenny L; Thoroughman, Kurt A.

Exp Brain Res ; 226(3): 407-20, 2013 May.

Artículo en Inglés | MEDLINE | ID: mdl-23468159

6.

ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data.

Dolzhenko, Egor; Bennett, Mark F; Richmond, Phillip A; Trost, Brett; Chen, Sai; van Vugt, Joke J F A; Nguyen, Charlotte; Narzisi, Giuseppe; Gainullin, Vladimir G; Gross, Andrew M; Lajoie, Bryan R; Taft, Ryan J; Wasserman, Wyeth W; Scherer, Stephen W; Veldink, Jan H; Bentley, David R; Yuen, Ryan K C; Bahlo, Melanie; Eberle, Michael A.

Genome Biol ; 21(1): 102, 2020 04 28.

Artículo en Inglés | MEDLINE | ID: mdl-32345345

7.

Genome sequencing in persistently unsolved white matter disorders.

Helman, Guy; Lajoie, Bryan R; Crawford, Joanna; Takanohashi, Asako; Walkiewicz, Marzena; Dolzhenko, Egor; Gross, Andrew M; Gainullin, Vladimir G; Bent, Stephen J; Jenkinson, Emma M; Ferdinandusse, Sacha; Waterham, Hans R; Dorboz, Imen; Bertini, Enrico; Miyake, Noriko; Wolf, Nicole I; Abbink, Truus E M; Kirwin, Susan M; Tan, Christina M; Hobson, Grace M; Guo, Long; Ikegawa, Shiro; Pizzino, Amy; Schmidt, Johanna L; Bernard, Genevieve; Schiffmann, Raphael; van der Knaap, Marjo S; Simons, Cas; Taft, Ryan J; Vanderver, Adeline.

Ann Clin Transl Neurol ; 7(1): 144-152, 2020 01.

Artículo en Inglés | MEDLINE | ID: mdl-31912665

8.

Multiple Routes to Oncogenesis Are Promoted by the Human Papillomavirus-Host Protein Network.

Eckhardt, Manon; Zhang, Wei; Gross, Andrew M; Von Dollen, John; Johnson, Jeffrey R; Franks-Skiba, Kathleen E; Swaney, Danielle L; Johnson, Tasha L; Jang, Gwendolyn M; Shah, Priya S; Brand, Toni M; Archambault, Jacques; Kreisberg, Jason F; Grandis, Jennifer R; Ideker, Trey; Krogan, Nevan J.

Cancer Discov ; 8(11): 1474-1489, 2018 11.

Artículo en Inglés | MEDLINE | ID: mdl-30209081

9.

Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment.

Wang, Tina; Tsui, Brian; Kreisberg, Jason F; Robertson, Neil A; Gross, Andrew M; Yu, Michael Ku; Carter, Hannah; Brown-Borg, Holly M; Adams, Peter D; Ideker, Trey.

Genome Biol ; 18(1): 57, 2017 03 28.

Artículo en Inglés | MEDLINE | ID: mdl-28351423

10.

Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer.

Carter, Hannah; Marty, Rachel; Hofree, Matan; Gross, Andrew M; Jensen, James; Fisch, Kathleen M; Wu, Xingyu; DeBoever, Christopher; Van Nostrand, Eric L; Song, Yan; Wheeler, Emily; Kreisberg, Jason F; Lippman, Scott M; Yeo, Gene W; Gutkind, J Silvio; Ideker, Trey.

Cancer Discov ; 7(4): 410-423, 2017 04.

Artículo en Inglés | MEDLINE | ID: mdl-28188128

11.

Analysis of Matched Tumor and Normal Profiles Reveals Common Transcriptional and Epigenetic Signals Shared across Cancer Types.

Gross, Andrew M; Kreisberg, Jason F; Ideker, Trey.

PLoS One ; 10(11): e0142618, 2015.

Artículo en Inglés | MEDLINE | ID: mdl-26555223

12.

ERCC1 and TS Expression as Prognostic and Predictive Biomarkers in Metastatic Colon Cancer.

Choueiri, Michel B; Shen, John Paul; Gross, Andrew M; Huang, Justin K; Ideker, Trey; Fanta, Paul.

PLoS One ; 10(6): e0126898, 2015.

Artículo en Inglés | MEDLINE | ID: mdl-26083491

13.

Combined TP53 mutation/3p loss correlates with decreased radiosensitivity and increased matrix-metalloproteinase activity in head and neck carcinoma.

Raju, Sharat C; Hauff, Samantha J; Lemieux, Aaron J; Orosco, Ryan K; Gross, Andrew M; Nguyen, Linda T; Savariar, Elamprakash; Moss, William; Whitney, Michael; Cohen, Ezra E; Lippman, Scott M; Tsien, Roger Y; Ideker, Trey; Advani, Sunil J; Nguyen, Quyen T.

Oral Oncol ; 51(5): 470-5, 2015 May.

Artículo en Inglés | MEDLINE | ID: mdl-25735654

14.

Matrix-metalloproteinases in head and neck carcinoma-cancer genome atlas analysis and fluorescence imaging in mice.

Hauff, Samantha J; Raju, Sharat C; Orosco, Ryan K; Gross, Andrew M; Diaz-Perez, Julio A; Savariar, Elamprakash; Nashi, Nadia; Hasselman, Jonathan; Whitney, Michael; Myers, Jeffrey N; Lippman, Scott M; Tsien, Roger Y; Ideker, Trey; Nguyen, Quyen T.

Otolaryngol Head Neck Surg ; 151(4): 612-8, 2014 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-25091190

15.

Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss.

Gross, Andrew M; Orosco, Ryan K; Shen, John P; Egloff, Ann Marie; Carter, Hannah; Hofree, Matan; Choueiri, Michel; Coffey, Charles S; Lippman, Scott M; Hayes, D Neil; Cohen, Ezra E; Grandis, Jennifer R; Nguyen, Quyen T; Ideker, Trey.

Nat Genet ; 46(9): 939-43, 2014 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-25086664

16.

Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA.

Muralidhara, Chaitanya; Gross, Andrew M; Gutell, Robin R; Alter, Orly.

PLoS One ; 6(4): e18768, 2011.

Artículo en Inglés | MEDLINE | ID: mdl-21625625

17.

Molecular networks in context.

Gross, Andrew M; Ideker, Trey.

Nat Biotechnol ; 33(7): 720-1, 2015 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-26154012

18.

Towards a personalized treatment of head and neck cancer.

Gross, Andrew M; Cohen, Ezra E W.

Am Soc Clin Oncol Educ Book ; : 28-32, 2015.

Artículo en Inglés | MEDLINE | ID: mdl-25993138

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